Wall clock time and date at job start Tue Mar 31 2020 22:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50698 * 109.47116 * 2 1 4 4 C 1.38251 * 120.00442 * 94.17098 * 3 2 1 5 5 C 1.38210 * 120.00391 * 180.27670 * 4 3 2 6 6 C 1.38263 * 119.99538 * 359.74613 * 5 4 3 7 7 C 1.38205 * 120.00222 * 359.97438 * 6 5 4 8 8 C 1.38220 * 119.99734 * 273.92025 * 3 2 1 9 9 C 1.50703 * 119.99794 * 359.97438 * 8 3 2 10 10 H 1.08999 * 109.47170 * 34.40399 * 9 8 3 11 11 C 1.52996 * 109.46799 * 274.39708 * 9 8 3 12 12 N 1.46499 * 109.46926 * 183.93157 * 11 9 8 13 13 C 1.34781 * 120.00426 * 179.97438 * 12 11 9 14 14 O 1.21514 * 119.99565 * 0.02562 * 13 12 11 15 15 C 1.48165 * 120.00315 * 180.02562 * 13 12 11 16 16 C 1.39305 * 119.72155 * 180.02562 * 15 13 12 17 17 C 1.38598 * 119.05932 * 180.02562 * 16 15 13 18 18 C 1.38627 * 118.48556 * 359.97438 * 17 16 15 19 19 C 1.38555 * 119.35279 * 0.25699 * 18 17 16 20 20 N 1.31522 * 120.90487 * 359.49240 * 19 18 17 21 21 N 1.46505 * 109.46863 * 154.40016 * 9 8 3 22 22 C 1.36940 * 119.99893 * 275.00131 * 21 9 8 23 23 H 1.08004 * 120.00081 * 359.97438 * 22 21 9 24 24 C 1.38813 * 119.99901 * 180.02562 * 22 21 9 25 25 N 1.31614 * 119.99873 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00019 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47100 * 89.99924 * 26 24 22 28 28 H 1.48500 * 109.47194 * 210.00564 * 26 24 22 29 29 H 1.48511 * 109.47123 * 330.00413 * 26 24 22 30 30 H 1.08995 * 109.46911 * 54.61352 * 1 2 3 31 31 H 1.09004 * 109.47004 * 174.61788 * 1 2 3 32 32 H 1.09008 * 109.46804 * 294.61327 * 1 2 3 33 33 H 1.08994 * 109.46837 * 239.99505 * 2 1 3 34 34 H 1.09005 * 109.46719 * 119.99755 * 2 1 3 35 35 H 1.08007 * 120.00125 * 0.04695 * 4 3 2 36 36 H 1.08002 * 120.00452 * 179.77152 * 5 4 3 37 37 H 1.07999 * 119.99515 * 180.02562 * 6 5 4 38 38 H 1.08000 * 120.00307 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.47051 * 63.93682 * 11 9 8 40 40 H 1.08996 * 109.47328 * 303.93003 * 11 9 8 41 41 H 0.97003 * 120.00381 * 0.02562 * 12 11 9 42 42 H 1.07998 * 120.47192 * 359.97438 * 16 15 13 43 43 H 1.07993 * 120.75678 * 180.02562 * 17 16 15 44 44 H 1.08001 * 120.32056 * 179.97438 * 18 17 16 45 45 H 1.08008 * 119.54882 * 179.74688 * 19 18 17 46 46 H 0.96993 * 119.99672 * 94.99496 * 21 9 8 47 47 H 0.96999 * 119.99665 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3449 2.0436 1.1941 5 6 2.8002 3.3485 1.1945 6 6 2.9481 4.0294 0.0002 7 6 2.6411 3.4050 -1.1939 8 6 2.1856 2.0996 -1.1943 9 6 1.8508 1.4186 -2.4963 10 1 1.0066 0.7453 -2.3477 11 6 3.0622 0.6189 -2.9797 12 7 2.7695 0.0336 -4.2904 13 6 3.6977 -0.7175 -4.9156 14 8 4.7772 -0.9096 -4.3918 15 6 3.4018 -1.3089 -6.2415 16 6 4.3653 -2.0847 -6.8822 17 6 4.0742 -2.6309 -8.1223 18 6 2.8288 -2.3824 -8.6784 19 6 1.9206 -1.5973 -7.9866 20 7 2.2212 -1.0952 -6.8088 21 7 1.5000 2.4276 -3.4990 22 6 0.2186 2.9051 -3.5705 23 1 -0.5336 2.5377 -2.8881 24 6 -0.1139 3.8607 -4.5209 25 7 -1.3456 4.3193 -4.5900 26 14 1.1869 4.4958 -5.7017 27 1 1.2044 3.6486 -6.9212 28 1 0.8725 5.8977 -6.0772 29 1 2.5181 4.4459 -5.0452 30 1 -0.3633 0.5951 -0.8378 31 1 -0.3633 -1.0232 -0.0964 32 1 -0.3633 0.4281 0.9344 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 2.2298 1.5116 2.1269 36 1 3.0409 3.8363 2.1276 37 1 3.3042 5.0490 0.0005 38 1 2.7562 3.9369 -2.1267 39 1 3.2803 -0.1766 -2.2671 40 1 3.9249 1.2800 -3.0615 41 1 1.9079 0.1872 -4.7087 42 1 5.3257 -2.2575 -6.4196 43 1 4.8006 -3.2369 -8.6432 44 1 2.5708 -2.7930 -9.6434 45 1 0.9510 -1.3983 -8.4187 46 1 2.1755 2.7574 -4.1120 47 1 -1.5778 4.9874 -5.2539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699932699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:09 Heat of formation + Delta-G solvation = 36.263364 kcal Electronic energy + Delta-G solvation = -29207.536837 eV Core-core repulsion = 25355.341564 eV Total energy + Delta-G solvation = -3852.195274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.59902 -39.53462 -38.68800 -36.06797 -33.88265 -33.79871 -32.69135 -31.89096 -31.44511 -29.94297 -29.08778 -27.81850 -24.91765 -23.78601 -23.53029 -23.06318 -22.66988 -20.70797 -20.38888 -19.84441 -18.31169 -17.59054 -16.82376 -16.13037 -16.01798 -15.80682 -15.38536 -15.10654 -14.92734 -14.59669 -14.31607 -13.89788 -13.80737 -13.44400 -13.38121 -13.24103 -13.15454 -12.95163 -12.81784 -12.58611 -12.40912 -12.11859 -11.80206 -11.48333 -11.34382 -10.99933 -10.90573 -10.81603 -10.49183 -10.36148 -10.20796 -10.15168 -10.14207 -9.62801 -9.56281 -9.36494 -9.06670 -8.78125 -8.28489 -8.11066 -7.39898 -5.82090 -3.20296 0.55150 1.06502 1.81213 1.91615 2.79925 3.26725 3.33739 3.37228 3.42676 3.83086 4.12901 4.24082 4.53705 4.62385 4.74291 4.81361 4.90087 5.03396 5.15889 5.18521 5.28563 5.33357 5.42340 5.46922 5.54080 5.56883 5.61524 5.69129 5.73450 5.80695 5.83579 5.90544 5.95968 6.01497 6.04469 6.18066 6.31052 6.35907 6.41580 6.46575 6.60637 6.65299 6.66726 6.94119 7.04259 7.25192 7.51761 7.55225 7.87155 7.91528 8.34797 8.36087 9.11575 9.83623 10.01045 11.35651 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.004159 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.627191 B = 6730.892127 C = 8492.034871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.081 4.081 4 C -0.127 4.127 5 C -0.128 4.128 6 C -0.132 4.132 7 C -0.079 4.079 8 C -0.082 4.082 9 C 0.203 3.797 10 H 0.080 0.920 11 C 0.114 3.886 12 N -0.694 5.694 13 C 0.565 3.435 14 O -0.544 6.544 15 C 0.083 3.917 16 C -0.116 4.116 17 C -0.085 4.085 18 C -0.155 4.155 19 C 0.100 3.900 20 N -0.451 5.451 21 N -0.739 5.739 22 C -0.243 4.243 23 H 0.092 0.908 24 C 0.014 3.986 25 N -0.928 5.928 26 Si 0.877 3.123 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.421 0.579 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.164 0.836 46 H 0.363 0.637 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.165 -12.971 -0.190 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.145 4.145 5 C -0.147 4.147 6 C -0.150 4.150 7 C -0.098 4.098 8 C -0.085 4.085 9 C 0.092 3.908 10 H 0.098 0.902 11 C -0.010 4.010 12 N -0.346 5.346 13 C 0.349 3.651 14 O -0.422 6.422 15 C -0.056 4.056 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.175 4.175 19 C -0.059 4.059 20 N -0.162 5.162 21 N -0.382 5.382 22 C -0.373 4.373 23 H 0.110 0.890 24 C -0.182 4.182 25 N -0.575 5.575 26 Si 0.707 3.293 27 H -0.209 1.209 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.143 0.857 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.260 0.740 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.181 0.819 46 H 0.197 0.803 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.034 -12.510 0.689 15.447 hybrid contribution 0.963 0.416 -1.556 1.877 sum 9.998 -12.094 -0.867 15.716 Atomic orbital electron populations 1.21764 0.94650 1.01469 1.02681 1.20563 0.96397 0.93012 1.02268 1.19713 0.99605 0.96080 0.92798 1.20847 1.01439 0.95254 0.96992 1.20970 1.01200 0.94933 0.97563 1.21091 1.01583 0.99541 0.92827 1.21034 0.96232 0.94451 0.98050 1.20677 0.97544 0.94997 0.95332 1.19457 0.94597 0.90312 0.86393 0.90216 1.21739 0.98642 0.97031 0.83638 1.45892 1.18945 1.49421 1.20303 1.17891 0.84239 0.79076 0.83860 1.90757 1.23728 1.61398 1.66349 1.21259 0.90917 0.97661 0.95732 1.22128 1.00675 0.95792 0.95077 1.21609 0.96855 0.97907 0.94705 1.22389 0.94639 0.99083 1.01375 1.22891 0.99896 0.93073 0.90058 1.67651 1.18296 1.19148 1.11151 1.42817 1.09936 1.47655 1.37754 1.18982 0.85299 1.18165 1.14832 0.89017 1.24601 0.95771 0.98945 0.98907 1.69686 1.17098 1.33181 1.37533 0.86689 0.81807 0.78572 0.82225 1.20917 1.21801 1.20445 0.91485 0.92824 0.92904 0.91020 0.91688 0.86971 0.87032 0.86898 0.85745 0.90770 0.91353 0.74000 0.83519 0.84219 0.84300 0.81884 0.80334 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 2 C -0.09 -1.14 5.38 -27.88 -0.15 -1.29 16 3 C -0.08 -1.28 5.13 -104.62 -0.54 -1.82 16 4 C -0.13 -1.87 9.68 -39.59 -0.38 -2.25 16 5 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 6 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 7 C -0.08 -1.47 9.32 -39.59 -0.37 -1.84 16 8 C -0.08 -1.46 5.02 -104.62 -0.53 -1.98 16 9 C 0.20 3.68 1.95 -69.08 -0.13 3.55 16 10 H 0.08 1.47 5.70 -51.93 -0.30 1.18 16 11 C 0.11 1.89 5.07 -4.04 -0.02 1.87 16 12 N -0.69 -11.67 5.38 -61.15 -0.33 -12.00 16 13 C 0.57 9.49 7.81 -12.18 -0.10 9.39 16 14 O -0.54 -10.07 16.32 5.35 0.09 -9.98 16 15 C 0.08 1.22 6.75 -83.01 -0.56 0.66 16 16 C -0.12 -1.38 9.63 -39.05 -0.38 -1.75 16 17 C -0.08 -0.76 10.17 -39.31 -0.40 -1.16 16 18 C -0.15 -1.34 10.11 -39.32 -0.40 -1.74 16 19 C 0.10 1.12 11.18 -17.57 -0.20 0.93 16 20 N -0.45 -6.61 9.54 -9.80 -0.09 -6.70 16 21 N -0.74 -16.07 3.16 -54.55 -0.17 -16.24 16 22 C -0.24 -6.38 10.40 -15.06 -0.16 -6.53 16 23 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 24 C 0.01 0.39 5.50 -17.43 -0.10 0.30 16 25 N -0.93 -28.11 13.97 55.49 0.78 -27.33 16 26 Si 0.88 21.53 27.74 -169.99 -4.71 16.81 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 30 H 0.07 1.08 7.05 -51.93 -0.37 0.71 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.07 0.95 5.60 -51.93 -0.29 0.66 16 34 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 35 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.12 2.48 7.27 -52.49 -0.38 2.10 16 39 H 0.07 1.15 6.82 -51.93 -0.35 0.79 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.42 7.43 7.50 -40.82 -0.31 7.12 16 42 H 0.15 1.63 7.64 -52.49 -0.40 1.23 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 46 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -32.14 390.18 -9.84 -41.98 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -6.44 Total: 17.77 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -4.83 Total: -10.17 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.18 Total: -62.28 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.14 -9.84 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699932699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.243 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds