Wall clock time and date at job start Tue Mar 31 2020 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.47254 * 120.00138 * 2 1 3 5 5 H 1.09000 * 109.47216 * 300.00019 * 4 2 1 6 6 C 1.52996 * 109.47458 * 179.97438 * 4 2 1 7 7 C 1.52996 * 109.47289 * 174.99850 * 6 4 2 8 8 N 1.46501 * 109.47297 * 180.02562 * 7 6 4 9 9 C 1.46499 * 119.99935 * 89.99832 * 8 7 6 10 10 C 1.34779 * 120.00044 * 270.00473 * 8 7 6 11 11 O 1.21578 * 119.99960 * 5.47399 * 10 8 7 12 12 C 1.47620 * 119.99737 * 185.47109 * 10 8 7 13 13 N 1.33054 * 120.53155 * 5.77469 * 12 10 8 14 14 N 1.28712 * 120.36969 * 179.70894 * 13 12 10 15 15 C 1.32949 * 121.55010 * 0.57268 * 14 13 12 16 16 O 1.35294 * 119.46917 * 179.68603 * 15 14 13 17 17 N 1.32465 * 121.06268 * 359.71171 * 15 14 13 18 18 C 1.32867 * 119.50968 * 359.97438 * 17 15 14 19 19 O 1.35296 * 120.71461 * 179.97438 * 18 17 15 20 20 N 1.46499 * 109.47032 * 59.99802 * 4 2 1 21 21 C 1.36938 * 120.00153 * 275.00406 * 20 4 2 22 22 H 1.07997 * 119.99967 * 359.97438 * 21 20 4 23 23 C 1.38812 * 120.00175 * 179.72375 * 21 20 4 24 24 N 1.31617 * 120.00440 * 180.26959 * 23 21 20 25 25 Si 1.86809 * 119.99931 * 0.27422 * 23 21 20 26 26 H 1.48502 * 109.46927 * 89.99537 * 25 23 21 27 27 H 1.48497 * 109.47197 * 210.00133 * 25 23 21 28 28 H 1.48499 * 109.46692 * 330.00096 * 25 23 21 29 29 H 1.09000 * 109.47024 * 299.99726 * 1 2 3 30 30 H 1.09001 * 109.47218 * 59.99590 * 1 2 3 31 31 H 1.08997 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47024 * 240.00274 * 2 1 3 33 33 H 1.08997 * 109.47649 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47370 * 300.00317 * 3 2 1 35 35 H 1.09009 * 109.46923 * 59.99945 * 3 2 1 36 36 H 1.08995 * 109.47038 * 295.00667 * 6 4 2 37 37 H 1.09001 * 109.46556 * 55.00306 * 6 4 2 38 38 H 1.09000 * 109.47100 * 300.00655 * 7 6 4 39 39 H 1.08999 * 109.46981 * 60.00163 * 7 6 4 40 40 H 1.09005 * 109.47053 * 95.33002 * 9 8 7 41 41 H 1.08995 * 109.47680 * 215.32943 * 9 8 7 42 42 H 1.09000 * 109.47390 * 335.33020 * 9 8 7 43 43 H 0.96705 * 113.99854 * 270.02252 * 16 15 14 44 44 H 0.96701 * 114.00101 * 270.01979 * 19 18 17 45 45 H 0.97002 * 119.99908 * 94.99692 * 20 4 2 46 46 H 0.97001 * 120.00635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7219 1.2489 7 6 4.0800 -1.3315 2.5562 8 7 5.5451 -1.3315 2.5562 9 6 6.2775 -0.1816 3.0924 10 6 6.2190 -2.3893 2.0629 11 8 5.6152 -3.2989 1.5278 12 6 7.6901 -2.4434 2.1721 13 7 8.3519 -1.5124 2.8546 14 7 9.6342 -1.5657 2.9525 15 6 10.3364 -2.5346 2.3731 16 8 11.6836 -2.5462 2.4981 17 7 9.7385 -3.4884 1.6750 18 6 8.4156 -3.4777 1.5517 19 8 7.7798 -4.4396 0.8438 20 7 1.5517 -2.1025 1.2492 21 6 0.3101 -2.3897 1.7503 22 1 -0.3089 -1.5981 2.1460 23 6 -0.1550 -3.6976 1.7451 24 7 -1.3504 -3.9730 2.2219 25 14 0.9160 -5.0670 1.0613 26 1 1.7529 -5.6315 2.1505 27 1 0.0530 -6.1350 0.4959 28 1 1.7937 -4.5229 -0.0058 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 3.9329 -1.3114 0.4071 37 1 3.9336 0.3018 1.1592 38 1 3.7170 -0.7418 3.3980 39 1 3.7164 -2.3551 2.6460 40 1 6.5419 -0.3721 4.1326 41 1 7.1853 -0.0251 2.5097 42 1 5.6505 0.7081 3.0340 43 1 12.1473 -2.0594 1.8029 44 1 7.6673 -4.2289 -0.0932 45 1 2.1078 -2.8135 0.8941 46 1 -1.6753 -4.8870 2.2185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700502269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:07 Heat of formation + Delta-G solvation = -33.958944 kcal Electronic energy + Delta-G solvation = -30349.639013 eV Core-core repulsion = 26083.549408 eV Total energy + Delta-G solvation = -4266.089605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.40408 -41.00599 -39.55740 -38.93288 -38.85402 -36.76065 -35.61956 -34.90865 -33.65621 -32.82949 -31.62544 -28.17262 -27.96787 -27.44290 -26.69553 -25.99785 -24.46567 -22.88556 -21.46642 -21.27707 -20.93005 -20.64392 -19.43396 -19.40188 -18.48388 -18.25929 -17.23827 -16.86897 -16.67471 -16.14158 -15.92931 -15.65534 -15.44013 -15.04088 -14.91173 -14.68282 -14.56039 -14.40122 -14.06151 -13.97752 -13.79859 -13.67852 -13.19995 -12.98042 -12.96524 -12.87496 -12.81563 -12.73993 -12.43989 -12.39082 -12.25658 -11.90731 -11.72434 -11.63572 -11.44254 -11.28595 -11.24293 -11.14551 -10.83293 -10.68478 -9.75268 -9.16310 -7.94321 -5.22402 -1.28123 -1.01793 1.14961 1.36182 1.38266 1.43331 1.46178 1.65827 1.76083 2.05232 2.39931 2.52673 3.08601 3.22350 3.37665 3.61274 3.69606 3.96014 4.12259 4.21312 4.24142 4.35291 4.46665 4.50577 4.69205 4.74609 4.79758 4.82910 4.98032 5.06278 5.07991 5.16954 5.18628 5.21614 5.27317 5.38287 5.45230 5.50554 5.70254 5.80186 5.91384 6.14325 6.15946 6.21584 6.31033 6.75868 6.88329 7.18000 7.96870 8.12846 9.27467 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.003186 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.733964 B = 8784.989777 C =10090.067179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C -0.137 4.137 4 C 0.183 3.817 5 H 0.054 0.946 6 C -0.125 4.125 7 C 0.120 3.880 8 N -0.586 5.586 9 C 0.077 3.923 10 C 0.566 3.434 11 O -0.540 6.540 12 C -0.060 4.060 13 N -0.098 5.098 14 N -0.296 5.296 15 C 0.491 3.509 16 O -0.447 6.447 17 N -0.519 5.519 18 C 0.426 3.574 19 O -0.453 6.453 20 N -0.750 5.750 21 C -0.193 4.193 22 H 0.070 0.930 23 C -0.063 4.063 24 N -0.985 5.985 25 Si 0.936 3.064 26 H -0.293 1.293 27 H -0.302 1.302 28 H -0.261 1.261 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.447 0.553 44 H 0.440 0.560 45 H 0.360 0.640 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.852 12.642 -3.686 29.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 C -0.194 4.194 4 C 0.075 3.925 5 H 0.072 0.928 6 C -0.164 4.164 7 C -0.002 4.002 8 N -0.317 5.317 9 C -0.065 4.065 10 C 0.350 3.650 11 O -0.416 6.416 12 C -0.212 4.212 13 N 0.042 4.958 14 N -0.160 5.160 15 C 0.187 3.813 16 O -0.254 6.254 17 N -0.263 5.263 18 C 0.228 3.772 19 O -0.263 6.263 20 N -0.392 5.392 21 C -0.324 4.324 22 H 0.088 0.912 23 C -0.254 4.254 24 N -0.638 5.638 25 Si 0.767 3.233 26 H -0.220 1.220 27 H -0.229 1.229 28 H -0.186 1.186 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.314 0.686 44 H 0.307 0.693 45 H 0.193 0.807 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 26.884 12.239 -2.434 29.639 hybrid contribution -0.177 -1.947 -1.522 2.478 sum 26.707 10.291 -3.955 28.893 Atomic orbital electron populations 1.21747 0.96503 1.01339 0.99799 1.21641 0.95385 0.96940 0.98846 1.21830 1.01426 0.94302 1.01874 1.20461 0.91794 0.84005 0.96228 0.92815 1.22140 0.94876 1.02405 0.96958 1.21576 0.76917 1.02425 0.99286 1.47905 1.07281 1.17809 1.58705 1.22377 0.97181 0.87006 0.99899 1.17387 0.84392 0.83151 0.80076 1.90922 1.68328 1.38315 1.44037 1.23806 0.97858 0.96222 1.03279 1.74433 0.99816 1.16281 1.05269 1.73884 1.00915 1.22200 1.18973 1.21965 0.88711 0.84894 0.85752 1.84684 1.08750 1.77213 1.54737 1.68301 1.10750 1.26607 1.20597 1.19921 0.85466 0.83490 0.88280 1.84683 1.74277 1.39184 1.28203 1.42976 1.16801 1.05136 1.74327 1.19005 0.92069 0.92823 1.28509 0.91197 1.25209 0.97568 0.99214 1.03375 1.69834 1.19670 1.19046 1.55225 0.85685 0.78326 0.80517 0.78798 1.22016 1.22941 1.18593 0.94204 0.93304 0.93895 0.93045 0.91065 0.92634 0.92419 0.93031 0.87774 0.88075 0.92595 0.91339 0.89225 0.88358 0.68592 0.69282 0.80745 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 8.26 71.98 0.59 -4.34 16 2 C -0.11 -3.31 2.69 -10.79 -0.03 -3.34 16 3 C -0.14 -3.00 8.85 71.98 0.64 -2.36 16 4 C 0.18 6.18 2.02 44.99 0.09 6.27 16 5 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 6 C -0.12 -3.29 4.86 30.59 0.15 -3.14 16 7 C 0.12 3.27 5.23 86.38 0.45 3.72 16 8 N -0.59 -13.49 2.87 -850.46 -2.44 -15.93 16 9 C 0.08 1.15 9.13 127.77 1.17 2.32 16 10 C 0.57 15.19 7.63 86.72 0.66 15.85 16 11 O -0.54 -18.62 14.93 16.38 0.24 -18.37 16 12 C -0.06 -1.31 6.66 42.05 0.28 -1.03 16 13 N -0.10 -1.90 7.54 -48.10 -0.36 -2.26 16 14 N -0.30 -5.40 11.60 -174.22 -2.02 -7.42 16 15 C 0.49 8.19 8.81 180.33 1.59 9.78 16 16 O -0.45 -4.78 13.63 -85.80 -1.17 -5.95 16 17 N -0.52 -10.11 10.58 -424.96 -4.49 -14.60 16 18 C 0.43 8.98 7.84 85.15 0.67 9.65 16 19 O -0.45 -9.49 11.78 -65.48 -0.77 -10.26 16 20 N -0.75 -33.55 4.26 -322.95 -1.37 -34.93 16 21 C -0.19 -10.50 8.05 84.03 0.68 -9.82 16 22 H 0.07 4.10 7.63 -2.91 -0.02 4.08 16 23 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 24 N -0.99 -63.57 13.97 21.65 0.30 -63.27 16 25 Si 0.94 48.43 27.74 68.60 1.90 50.33 16 26 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 27 H -0.30 -15.87 7.11 99.48 0.71 -15.17 16 28 H -0.26 -12.62 6.51 99.48 0.65 -11.97 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.93 6.01 -2.39 -0.01 1.92 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.26 6.32 -2.39 -0.02 1.25 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 2.00 6.17 -2.39 -0.01 1.99 16 38 H 0.10 2.38 8.07 -2.39 -0.02 2.36 16 39 H 0.06 2.03 7.11 -2.39 -0.02 2.01 16 40 H 0.07 1.01 8.02 -2.38 -0.02 0.99 16 41 H 0.09 1.25 5.76 -2.39 -0.01 1.24 16 42 H 0.10 1.02 8.03 -2.39 -0.02 1.00 16 43 H 0.45 -0.75 9.06 -74.05 -0.67 -1.42 16 44 H 0.44 4.80 9.06 -74.06 -0.67 4.13 16 45 H 0.36 16.70 5.66 -92.71 -0.52 16.17 16 46 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -79.62 377.31 -3.65 -83.27 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.87 Total: 19.10 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 7.40 Total: 20.29 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -10.39 Total: -138.42 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.70 Total: -34.58 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.90 Total: 50.33 kcal Total: -79.62 -3.65 -83.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700502269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.316 kcal (2) G-P(sol) polarization free energy of solvation -79.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds