Wall clock time and date at job start Tue Mar 31 2020 22:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47314 * 2 1 4 4 H 1.08993 * 109.47652 * 54.99684 * 3 2 1 5 5 C 1.53002 * 109.47263 * 175.00174 * 3 2 1 6 6 N 1.46504 * 109.47287 * 174.99740 * 5 3 2 7 7 C 1.34767 * 119.99917 * 179.97438 * 6 5 3 8 8 O 1.21570 * 120.00114 * 0.02562 * 7 6 5 9 9 C 1.47705 * 119.99948 * 180.02562 * 7 6 5 10 10 C 1.40195 * 120.46166 * 180.02562 * 9 7 6 11 11 C 1.38041 * 118.38791 * 180.02562 * 10 9 7 12 12 C 1.39509 * 119.21273 * 359.97438 * 11 10 9 13 13 C 1.48226 * 119.57207 * 179.97438 * 12 11 10 14 14 C 1.39424 * 120.13057 * 180.02562 * 13 12 11 15 15 C 1.37995 * 119.86731 * 179.97438 * 14 13 12 16 16 C 1.38338 * 120.12963 * 0.02562 * 15 14 13 17 17 C 1.38332 * 120.26308 * 359.97438 * 16 15 14 18 18 C 1.37988 * 120.13062 * 0.02562 * 17 16 15 19 19 N 1.32771 * 120.85905 * 0.26516 * 12 11 10 20 20 C 1.31522 * 121.76828 * 359.46514 * 19 12 11 21 21 N 1.46509 * 109.46999 * 295.00057 * 3 2 1 22 22 C 1.36935 * 120.00058 * 85.00400 * 21 3 2 23 23 H 1.08001 * 120.00168 * 359.97438 * 22 21 3 24 24 C 1.38813 * 119.99933 * 180.02562 * 22 21 3 25 25 N 1.31621 * 120.00010 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00037 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46962 * 59.99449 * 26 24 22 28 28 H 1.48503 * 109.47187 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47170 * 299.99849 * 26 24 22 30 30 H 1.08995 * 109.47441 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47318 * 300.00305 * 1 2 3 32 32 H 1.09006 * 109.47197 * 59.99855 * 1 2 3 33 33 H 1.09006 * 109.46742 * 240.00093 * 2 1 3 34 34 H 1.08993 * 109.46958 * 120.00367 * 2 1 3 35 35 H 1.08998 * 109.46793 * 55.00004 * 5 3 2 36 36 H 1.08999 * 109.46495 * 294.99883 * 5 3 2 37 37 H 0.97001 * 119.99756 * 0.02562 * 6 5 3 38 38 H 1.08002 * 120.80632 * 359.97438 * 10 9 7 39 39 H 1.07995 * 120.39635 * 180.02562 * 11 10 9 40 40 H 1.07996 * 120.06773 * 0.02562 * 14 13 12 41 41 H 1.08008 * 119.93430 * 179.72605 * 15 14 13 42 42 H 1.08010 * 119.86629 * 180.02562 * 16 15 14 43 43 H 1.08001 * 119.93254 * 180.02562 * 17 16 15 44 44 H 1.08003 * 120.06632 * 180.02562 * 18 17 16 45 45 H 1.07994 * 119.65259 * 180.29614 * 20 19 12 46 46 H 0.97002 * 119.99989 * 264.99864 * 21 3 2 47 47 H 0.97002 * 120.00083 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0058 7 6 5.3857 3.0629 0.0867 8 8 6.1653 2.1460 0.2586 9 6 5.8880 4.4467 -0.0336 10 6 7.2619 4.7137 0.0485 11 6 7.6842 6.0227 -0.0690 12 6 6.7375 7.0286 -0.2646 13 6 7.1821 8.4369 -0.3913 14 6 6.2460 9.4515 -0.5866 15 6 6.6659 10.7608 -0.7033 16 6 8.0127 11.0675 -0.6275 17 6 8.9461 10.0651 -0.4339 18 6 8.5382 8.7522 -0.3158 19 7 5.4430 6.7415 -0.3331 20 6 5.0012 5.5070 -0.2309 21 7 1.6525 2.0974 -1.2519 22 6 0.4157 2.6735 -1.3689 23 1 -0.2742 2.6447 -0.5384 24 6 0.0483 3.2937 -2.5552 25 7 0.8889 3.3284 -3.5674 26 14 -1.6391 4.0789 -2.7150 27 1 -1.7879 5.1448 -1.6918 28 1 -1.7837 4.6700 -4.0696 29 1 -2.6868 3.0467 -2.5104 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.9954 0.8310 -0.6660 36 1 3.8499 1.0376 1.0960 37 1 3.4411 3.5483 -0.1309 38 1 7.9725 3.9148 0.2009 39 1 8.7350 6.2651 -0.0111 40 1 5.1943 9.2133 -0.6455 41 1 5.9420 11.5471 -0.8590 42 1 8.3366 12.0938 -0.7190 43 1 9.9962 10.3107 -0.3751 44 1 9.2679 7.9705 -0.1642 45 1 3.9410 5.3118 -0.2962 46 1 2.2720 2.1231 -1.9979 47 1 0.6323 3.7620 -4.3963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714115469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:26 Heat of formation + Delta-G solvation = 29.532876 kcal Electronic energy + Delta-G solvation = -27890.269082 eV Core-core repulsion = 24037.781952 eV Total energy + Delta-G solvation = -3852.487130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74457 -39.42518 -38.50440 -36.72037 -33.92512 -33.09906 -32.65077 -32.35885 -31.09398 -30.05480 -29.59124 -27.78776 -25.02394 -24.14914 -23.59184 -22.60000 -22.19984 -21.58926 -20.36423 -19.91971 -18.20236 -17.51958 -17.01251 -16.73138 -16.28708 -15.42655 -15.31386 -14.88951 -14.72485 -14.69879 -14.52327 -14.17613 -13.92980 -13.71518 -13.56489 -13.26443 -13.10917 -13.00911 -12.85064 -12.60460 -12.45710 -12.16412 -11.52169 -11.47736 -11.31746 -10.98689 -10.89371 -10.77725 -10.47754 -10.22712 -10.11338 -10.10003 -9.98682 -9.88160 -9.56204 -9.44660 -9.18828 -8.97896 -8.77116 -8.41341 -7.06786 -5.83532 -3.13335 0.14095 1.13507 1.17357 1.38869 2.96184 3.38257 3.40717 3.44893 3.45919 3.55422 3.87821 3.97434 4.38072 4.52495 4.69235 4.71473 4.72886 4.79563 4.87918 4.97861 5.12779 5.24458 5.34455 5.36317 5.41545 5.45702 5.53273 5.65083 5.75719 5.88357 5.90039 5.92893 5.93629 5.97828 6.13514 6.16446 6.25210 6.33007 6.39572 6.45905 6.50323 6.54649 6.57917 6.70844 6.81280 6.99151 7.22587 7.64062 7.74535 7.81367 8.33316 8.41378 9.45510 9.99596 10.35547 11.37999 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.002703 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.717786 B =10356.447261 C =12513.210633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.114 3.886 6 N -0.704 5.704 7 C 0.559 3.441 8 O -0.549 6.549 9 C -0.184 4.184 10 C -0.015 4.015 11 C -0.175 4.175 12 C 0.184 3.816 13 C -0.053 4.053 14 C -0.075 4.075 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.127 4.127 18 C -0.099 4.099 19 N -0.478 5.478 20 C 0.150 3.850 21 N -0.722 5.722 22 C -0.240 4.240 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.928 5.928 26 Si 0.903 3.097 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.410 0.590 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.168 0.832 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.775 9.961 8.409 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.010 4.010 6 N -0.355 5.355 7 C 0.345 3.655 8 O -0.429 6.429 9 C -0.189 4.189 10 C -0.041 4.041 11 C -0.194 4.194 12 C 0.048 3.952 13 C -0.054 4.054 14 C -0.094 4.094 15 C -0.145 4.145 16 C -0.128 4.128 17 C -0.145 4.145 18 C -0.118 4.118 19 N -0.186 5.186 20 C -0.009 4.009 21 N -0.364 5.364 22 C -0.371 4.371 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.248 0.752 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.185 0.815 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.510 10.033 8.413 19.544 hybrid contribution -0.552 -0.005 -0.469 0.724 sum 13.958 10.028 7.944 18.934 Atomic orbital electron populations 1.21770 0.95686 0.99656 1.03275 1.22064 0.97001 0.98319 1.00051 1.20579 0.89770 0.92945 0.91525 0.92744 1.21733 0.95780 0.82139 1.01328 1.45910 1.06705 1.11195 1.71670 1.17947 0.82766 0.87624 0.77159 1.90743 1.56146 1.45572 1.50446 1.21120 0.95411 0.95152 1.07229 1.21631 0.94728 0.96750 0.91013 1.22009 1.01051 0.92742 1.03644 1.19964 0.88997 0.92906 0.93286 1.18548 0.93424 0.90599 1.02797 1.21443 1.00547 0.91777 0.95615 1.21200 0.96041 0.96540 1.00692 1.21304 0.93335 0.99394 0.98733 1.21048 0.99747 0.92580 1.01077 1.21257 0.94548 0.96954 0.99006 1.67650 1.15521 1.21967 1.13487 1.23110 1.00441 0.86629 0.90760 1.42461 1.16821 1.65881 1.11251 1.19144 0.91969 1.27989 0.98006 0.90938 1.24730 0.98008 1.01477 0.96349 1.69647 1.35235 1.48732 1.03987 0.86347 0.84254 0.79234 0.76807 1.21228 1.21783 1.21304 0.94878 0.94106 0.89637 0.92494 0.93830 0.91548 0.91589 0.75238 0.83362 0.84040 0.84382 0.85600 0.85934 0.85680 0.85470 0.81488 0.78088 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.90 2.59 -67.93 -0.18 2.72 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.88 5.23 -4.04 -0.02 1.86 16 6 N -0.70 -11.46 5.34 -61.29 -0.33 -11.79 16 7 C 0.56 9.29 7.77 -12.40 -0.10 9.20 16 8 O -0.55 -10.44 16.41 5.30 0.09 -10.35 16 9 C -0.18 -2.69 5.89 -104.78 -0.62 -3.31 16 10 C -0.02 -0.19 9.70 -38.92 -0.38 -0.57 16 11 C -0.17 -1.95 9.44 -39.18 -0.37 -2.32 16 12 C 0.18 2.37 6.73 -82.88 -0.56 1.81 16 13 C -0.05 -0.60 5.88 -104.91 -0.62 -1.22 16 14 C -0.08 -0.84 9.57 -39.23 -0.38 -1.21 16 15 C -0.13 -1.15 10.03 -39.63 -0.40 -1.55 16 16 C -0.11 -0.86 10.04 -39.51 -0.40 -1.26 16 17 C -0.13 -0.99 10.03 -39.64 -0.40 -1.39 16 18 C -0.10 -0.89 9.42 -39.23 -0.37 -1.26 16 19 N -0.48 -6.98 9.40 -9.45 -0.09 -7.07 16 20 C 0.15 2.18 10.70 -17.16 -0.18 2.00 16 21 N -0.72 -15.98 4.51 -53.42 -0.24 -16.22 16 22 C -0.24 -5.95 7.75 -15.06 -0.12 -6.07 16 23 H 0.07 1.76 7.32 -52.49 -0.38 1.37 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -26.39 13.06 55.49 0.72 -25.66 16 26 Si 0.90 21.29 29.55 -169.99 -5.02 16.26 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.41 6.67 6.19 -40.82 -0.25 6.42 16 38 H 0.15 1.71 7.73 -52.49 -0.41 1.30 16 39 H 0.14 1.11 6.17 -52.49 -0.32 0.79 16 40 H 0.14 1.62 7.53 -52.49 -0.40 1.23 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.87 6.17 -52.48 -0.32 0.54 16 45 H 0.17 2.34 6.41 -52.49 -0.34 2.00 16 46 H 0.39 9.40 7.80 -40.82 -0.32 9.08 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -30.26 391.39 -10.36 -40.61 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -6.41 Total: 15.83 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -4.98 Total: -7.51 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.07 Total: -60.75 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.26 -10.36 -40.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714115469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.145 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds