Wall clock time and date at job start Tue Mar 31 2020 22:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47314 * 2 1 4 4 H 1.08993 * 109.47652 * 54.99684 * 3 2 1 5 5 C 1.53002 * 109.47263 * 175.00174 * 3 2 1 6 6 N 1.46504 * 109.47287 * 174.99740 * 5 3 2 7 7 C 1.34767 * 119.99917 * 179.97438 * 6 5 3 8 8 O 1.21570 * 120.00114 * 0.02562 * 7 6 5 9 9 C 1.47705 * 119.99948 * 180.02562 * 7 6 5 10 10 C 1.40195 * 120.46166 * 180.02562 * 9 7 6 11 11 C 1.38041 * 118.38791 * 180.02562 * 10 9 7 12 12 C 1.39509 * 119.21273 * 359.97438 * 11 10 9 13 13 C 1.48226 * 119.57207 * 179.97438 * 12 11 10 14 14 C 1.39424 * 120.13057 * 180.02562 * 13 12 11 15 15 C 1.37995 * 119.86731 * 179.97438 * 14 13 12 16 16 C 1.38338 * 120.12963 * 0.02562 * 15 14 13 17 17 C 1.38332 * 120.26308 * 359.97438 * 16 15 14 18 18 C 1.37988 * 120.13062 * 0.02562 * 17 16 15 19 19 N 1.32771 * 120.85905 * 0.26516 * 12 11 10 20 20 C 1.31522 * 121.76828 * 359.46514 * 19 12 11 21 21 N 1.46509 * 109.46999 * 295.00057 * 3 2 1 22 22 C 1.36935 * 120.00058 * 85.00400 * 21 3 2 23 23 H 1.08001 * 120.00168 * 359.97438 * 22 21 3 24 24 C 1.38813 * 119.99933 * 180.02562 * 22 21 3 25 25 N 1.31621 * 120.00010 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00037 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46962 * 59.99449 * 26 24 22 28 28 H 1.48503 * 109.47187 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47170 * 299.99849 * 26 24 22 30 30 H 1.08995 * 109.47441 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47318 * 300.00305 * 1 2 3 32 32 H 1.09006 * 109.47197 * 59.99855 * 1 2 3 33 33 H 1.09006 * 109.46742 * 240.00093 * 2 1 3 34 34 H 1.08993 * 109.46958 * 120.00367 * 2 1 3 35 35 H 1.08998 * 109.46793 * 55.00004 * 5 3 2 36 36 H 1.08999 * 109.46495 * 294.99883 * 5 3 2 37 37 H 0.97001 * 119.99756 * 0.02562 * 6 5 3 38 38 H 1.08002 * 120.80632 * 359.97438 * 10 9 7 39 39 H 1.07995 * 120.39635 * 180.02562 * 11 10 9 40 40 H 1.07996 * 120.06773 * 0.02562 * 14 13 12 41 41 H 1.08008 * 119.93430 * 179.72605 * 15 14 13 42 42 H 1.08010 * 119.86629 * 180.02562 * 16 15 14 43 43 H 1.08001 * 119.93254 * 180.02562 * 17 16 15 44 44 H 1.08003 * 120.06632 * 180.02562 * 18 17 16 45 45 H 1.07994 * 119.65259 * 180.29614 * 20 19 12 46 46 H 0.97002 * 119.99989 * 264.99864 * 21 3 2 47 47 H 0.97002 * 120.00083 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0058 7 6 5.3857 3.0629 0.0867 8 8 6.1653 2.1460 0.2586 9 6 5.8880 4.4467 -0.0336 10 6 7.2619 4.7137 0.0485 11 6 7.6842 6.0227 -0.0690 12 6 6.7375 7.0286 -0.2646 13 6 7.1821 8.4369 -0.3913 14 6 6.2460 9.4515 -0.5866 15 6 6.6659 10.7608 -0.7033 16 6 8.0127 11.0675 -0.6275 17 6 8.9461 10.0651 -0.4339 18 6 8.5382 8.7522 -0.3158 19 7 5.4430 6.7415 -0.3331 20 6 5.0012 5.5070 -0.2309 21 7 1.6525 2.0974 -1.2519 22 6 0.4157 2.6735 -1.3689 23 1 -0.2742 2.6447 -0.5384 24 6 0.0483 3.2937 -2.5552 25 7 0.8889 3.3284 -3.5674 26 14 -1.6391 4.0789 -2.7150 27 1 -1.7879 5.1448 -1.6918 28 1 -1.7837 4.6700 -4.0696 29 1 -2.6868 3.0467 -2.5104 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.9954 0.8310 -0.6660 36 1 3.8499 1.0376 1.0960 37 1 3.4411 3.5483 -0.1309 38 1 7.9725 3.9148 0.2009 39 1 8.7350 6.2651 -0.0111 40 1 5.1943 9.2133 -0.6455 41 1 5.9420 11.5471 -0.8590 42 1 8.3366 12.0938 -0.7190 43 1 9.9962 10.3107 -0.3751 44 1 9.2679 7.9705 -0.1642 45 1 3.9410 5.3118 -0.2962 46 1 2.2720 2.1231 -1.9979 47 1 0.6323 3.7620 -4.3963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714115469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:25 Heat of formation + Delta-G solvation = 12.167208 kcal Electronic energy + Delta-G solvation = -27891.022114 eV Core-core repulsion = 24037.781952 eV Total energy + Delta-G solvation = -3853.240162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79505 -40.50440 -39.43179 -38.25476 -35.38456 -34.30241 -33.91534 -33.58445 -31.78747 -31.52653 -30.82096 -29.19848 -26.19729 -25.37447 -24.99214 -23.92870 -23.01413 -22.47924 -21.69529 -21.28717 -19.48156 -18.94208 -18.24173 -17.82620 -17.04666 -16.99697 -16.55347 -16.28177 -15.85288 -15.76432 -15.50793 -15.35112 -15.12159 -15.05431 -14.67231 -14.49784 -14.32100 -14.18056 -14.04739 -13.78413 -13.53116 -13.38354 -12.97508 -12.79394 -12.73980 -12.38373 -12.20049 -12.14261 -12.00000 -11.88420 -11.63660 -11.34156 -11.27274 -11.11605 -10.87558 -10.80178 -10.54872 -10.10269 -9.86611 -9.28548 -8.97152 -7.86986 -5.13937 -0.81609 0.13682 0.49508 0.55173 1.51195 1.51259 1.56943 1.79585 2.13597 2.60209 2.64606 2.94734 3.06751 3.46710 3.49192 3.65614 3.75597 3.86061 3.92306 3.95160 4.03441 4.13661 4.18587 4.31498 4.38486 4.48455 4.50948 4.57514 4.59660 4.64866 4.72025 4.84693 4.88199 4.99006 5.02266 5.10283 5.13201 5.16919 5.21544 5.37870 5.43108 5.55836 5.56834 5.58907 5.62106 5.62260 5.73567 6.04770 6.32825 6.46438 6.74387 7.08910 7.41187 8.12823 8.37520 9.35509 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.002703 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.717786 B =10356.447261 C =12513.210633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.163 3.837 4 H 0.060 0.940 5 C 0.122 3.878 6 N -0.704 5.704 7 C 0.561 3.439 8 O -0.576 6.576 9 C -0.201 4.201 10 C -0.015 4.015 11 C -0.163 4.163 12 C 0.178 3.822 13 C -0.080 4.080 14 C -0.098 4.098 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.125 4.125 18 C -0.097 4.097 19 N -0.503 5.503 20 C 0.142 3.858 21 N -0.728 5.728 22 C -0.216 4.216 23 H 0.080 0.920 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.957 3.043 27 H -0.279 1.279 28 H -0.305 1.305 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.409 0.591 38 H 0.161 0.839 39 H 0.181 0.819 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.161 0.839 46 H 0.372 0.628 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.735 10.861 10.025 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.078 0.922 5 C -0.002 4.002 6 N -0.354 5.354 7 C 0.349 3.651 8 O -0.458 6.458 9 C -0.207 4.207 10 C -0.041 4.041 11 C -0.182 4.182 12 C 0.043 3.957 13 C -0.081 4.081 14 C -0.117 4.117 15 C -0.153 4.153 16 C -0.123 4.123 17 C -0.143 4.143 18 C -0.116 4.116 19 N -0.212 5.212 20 C -0.017 4.017 21 N -0.368 5.368 22 C -0.348 4.348 23 H 0.098 0.902 24 C -0.264 4.264 25 N -0.618 5.618 26 Si 0.788 3.212 27 H -0.205 1.205 28 H -0.232 1.232 29 H -0.209 1.209 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.247 0.753 38 H 0.179 0.821 39 H 0.198 0.802 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.175 0.825 44 H 0.169 0.831 45 H 0.179 0.821 46 H 0.204 0.796 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.449 10.916 10.085 22.169 hybrid contribution -1.071 -0.212 -0.884 1.405 sum 15.378 10.704 9.201 20.874 Atomic orbital electron populations 1.21701 0.96003 1.00577 1.01797 1.21980 0.96598 0.97231 1.01141 1.20741 0.90803 0.93445 0.89559 0.92186 1.21655 0.94486 0.82221 1.01885 1.45919 1.06861 1.11113 1.71549 1.18200 0.82436 0.88212 0.76300 1.90715 1.56606 1.46511 1.51934 1.21006 0.96510 0.93855 1.09291 1.21856 0.93951 0.97868 0.90399 1.22350 1.02605 0.91434 1.01808 1.20435 0.88665 0.94368 0.92263 1.18687 0.94781 0.89690 1.04899 1.21454 0.99881 0.93130 0.97253 1.21423 0.97385 0.95923 1.00579 1.21708 0.92637 1.01037 0.96949 1.21477 1.01367 0.91897 0.99567 1.21565 0.93673 0.98408 0.97968 1.67645 1.17081 1.21857 1.14572 1.23027 1.00348 0.86943 0.91402 1.42577 1.15797 1.66115 1.12343 1.19443 0.92494 1.25384 0.97430 0.90184 1.25348 1.00820 1.03506 0.96684 1.69797 1.36812 1.50927 1.04276 0.85456 0.81252 0.78547 0.75986 1.20533 1.23174 1.20872 0.92895 0.93155 0.93332 0.93555 0.90520 0.92681 0.89680 0.75329 0.82125 0.80165 0.86373 0.84237 0.83104 0.82517 0.83073 0.82146 0.79594 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.18 71.98 0.66 -4.12 16 2 C -0.13 -4.12 5.61 30.59 0.17 -3.95 16 3 C 0.16 5.71 2.59 44.99 0.12 5.83 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 3.94 5.23 86.38 0.45 4.40 16 6 N -0.70 -23.31 5.34 -466.11 -2.49 -25.80 16 7 C 0.56 18.92 7.77 86.75 0.67 19.59 16 8 O -0.58 -21.90 16.41 -3.94 -0.06 -21.96 16 9 C -0.20 -6.00 5.89 -19.96 -0.12 -6.11 16 10 C -0.01 -0.36 9.70 22.70 0.22 -0.14 16 11 C -0.16 -3.36 9.44 22.53 0.21 -3.15 16 12 C 0.18 4.54 6.73 41.97 0.28 4.82 16 13 C -0.08 -1.76 5.88 -20.05 -0.12 -1.88 16 14 C -0.10 -2.23 9.57 22.50 0.22 -2.01 16 15 C -0.14 -2.31 10.03 22.24 0.22 -2.08 16 16 C -0.11 -1.35 10.04 22.32 0.22 -1.13 16 17 C -0.13 -1.51 10.03 22.23 0.22 -1.29 16 18 C -0.10 -1.49 9.42 22.50 0.21 -1.27 16 19 N -0.50 -15.30 9.40 -183.83 -1.73 -17.03 16 20 C 0.14 4.34 10.70 85.08 0.91 5.25 16 21 N -0.73 -32.61 4.51 -322.94 -1.46 -34.07 16 22 C -0.22 -10.76 7.75 84.03 0.65 -10.10 16 23 H 0.08 3.83 7.32 -2.91 -0.02 3.81 16 24 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 25 N -0.97 -56.87 13.06 21.65 0.28 -56.59 16 26 Si 0.96 44.64 29.55 68.60 2.03 46.67 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 29 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.98 5.99 -2.38 -0.01 1.96 16 33 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.41 13.78 6.19 -92.71 -0.57 13.20 16 38 H 0.16 3.49 7.73 -2.91 -0.02 3.46 16 39 H 0.18 2.18 6.17 -2.91 -0.02 2.16 16 40 H 0.12 3.03 7.53 -2.91 -0.02 3.01 16 41 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 42 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.15 1.45 6.17 -2.91 -0.02 1.43 16 45 H 0.16 4.88 6.41 -2.91 -0.02 4.86 16 46 H 0.37 18.70 7.80 -92.71 -0.72 17.98 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -67.23 391.39 1.97 -65.27 By element: Atomic # 1 Polarization: 44.53 SS G_CDS: -0.29 Total: 44.24 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.68 Total: -0.74 kcal Atomic # 7 Polarization: -128.08 SS G_CDS: -5.39 Total: -133.47 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.06 Total: -21.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.23 1.97 -65.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714115469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.434 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds