Wall clock time and date at job start Tue Mar 31 2020 22:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46991 * 2 1 4 4 H 1.09005 * 109.47270 * 304.99924 * 3 2 1 5 5 C 1.53002 * 109.47081 * 185.00322 * 3 2 1 6 6 N 1.46504 * 109.47287 * 184.99672 * 5 3 2 7 7 C 1.34776 * 119.99714 * 179.97438 * 6 5 3 8 8 O 1.21570 * 120.00318 * 0.02562 * 7 6 5 9 9 C 1.47705 * 119.99744 * 180.02562 * 7 6 5 10 10 C 1.40195 * 120.46166 * 180.02562 * 9 7 6 11 11 C 1.38041 * 118.38791 * 180.02562 * 10 9 7 12 12 C 1.39509 * 119.21273 * 359.97438 * 11 10 9 13 13 C 1.48226 * 119.57207 * 179.97438 * 12 11 10 14 14 C 1.39424 * 120.13057 * 180.02562 * 13 12 11 15 15 C 1.37995 * 119.86731 * 179.97438 * 14 13 12 16 16 C 1.38338 * 120.12963 * 0.02562 * 15 14 13 17 17 C 1.38332 * 120.26308 * 359.97438 * 16 15 14 18 18 C 1.37988 * 120.13062 * 0.02562 * 17 16 15 19 19 N 1.32771 * 120.85905 * 0.26516 * 12 11 10 20 20 C 1.31522 * 121.76828 * 359.46514 * 19 12 11 21 21 N 1.46495 * 109.47839 * 65.00163 * 3 2 1 22 22 C 1.36933 * 120.00162 * 275.00206 * 21 3 2 23 23 H 1.08002 * 119.99853 * 359.97438 * 22 21 3 24 24 C 1.38813 * 120.00359 * 179.97438 * 22 21 3 25 25 N 1.31619 * 119.99838 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00081 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47270 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46983 * 120.00074 * 26 24 22 29 29 H 1.48497 * 109.47019 * 239.99732 * 26 24 22 30 30 H 1.09000 * 109.46591 * 300.00135 * 1 2 3 31 31 H 1.08990 * 109.46826 * 59.99860 * 1 2 3 32 32 H 1.08996 * 109.47038 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46591 * 239.99865 * 2 1 3 34 34 H 1.09003 * 109.47161 * 120.00094 * 2 1 3 35 35 H 1.09003 * 109.47239 * 64.99784 * 5 3 2 36 36 H 1.09003 * 109.46937 * 304.99962 * 5 3 2 37 37 H 0.96992 * 120.00064 * 0.02562 * 6 5 3 38 38 H 1.08002 * 120.80632 * 359.97438 * 10 9 7 39 39 H 1.07995 * 120.39635 * 180.02562 * 11 10 9 40 40 H 1.07996 * 120.06773 * 0.02562 * 14 13 12 41 41 H 1.08008 * 119.93430 * 179.72605 * 15 14 13 42 42 H 1.08009 * 119.86648 * 179.97438 * 16 15 14 43 43 H 1.08001 * 119.93269 * 179.97438 * 17 16 15 44 44 H 1.08003 * 120.06632 * 180.02562 * 18 17 16 45 45 H 1.07994 * 119.65259 * 180.29614 * 20 19 12 46 46 H 0.97002 * 119.99901 * 94.99503 * 21 3 2 47 47 H 0.97006 * 119.99794 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0061 7 6 5.3858 3.0629 -0.0861 8 8 6.1654 2.1460 -0.2580 9 6 5.8882 4.4465 0.0352 10 6 7.2620 4.7136 -0.0471 11 6 7.6845 6.0224 0.0725 12 6 6.7379 7.0281 0.2691 13 6 7.1827 8.4361 0.3992 14 6 6.2467 9.4504 0.5965 15 6 6.6669 10.7593 0.7173 16 6 8.0138 11.0659 0.6425 17 6 8.9471 10.0637 0.4469 18 6 8.5389 8.7513 0.3246 19 7 5.4442 6.7399 0.3471 20 6 5.0014 5.5068 0.2330 21 7 1.6526 2.0975 1.2517 22 6 0.4158 2.6735 1.3688 23 1 -0.2738 2.6452 0.5381 24 6 0.0484 3.2938 2.5550 25 7 0.8887 3.3279 3.5675 26 14 -1.6385 4.0802 2.7144 27 1 -2.3879 3.9059 1.4442 28 1 -2.3847 3.4308 3.8219 29 1 -1.4841 5.5284 3.0040 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8499 1.0376 -1.0961 36 1 3.9955 0.8311 0.6658 37 1 3.4412 3.5483 0.1314 38 1 7.9727 3.9148 -0.1994 39 1 8.7352 6.2649 0.0137 40 1 5.1950 9.2122 0.6554 41 1 5.9424 11.5464 0.8658 42 1 8.3380 12.0918 0.7373 43 1 9.9973 10.3092 0.3889 44 1 9.2685 7.9697 0.1723 45 1 3.9411 5.3117 0.2970 46 1 2.2721 2.1232 1.9977 47 1 0.6321 3.7617 4.3964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714115470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:28 Heat of formation + Delta-G solvation = 11.937185 kcal Electronic energy + Delta-G solvation = -27891.716872 eV Core-core repulsion = 24038.466736 eV Total energy + Delta-G solvation = -3853.250136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79520 -40.50451 -39.43227 -38.25736 -35.38617 -34.30392 -33.91568 -33.58477 -31.78799 -31.52807 -30.82179 -29.19905 -26.19930 -25.37853 -24.99342 -23.92871 -23.01467 -22.47965 -21.69627 -21.28764 -19.48382 -18.94482 -18.24250 -17.82663 -17.04708 -17.00183 -16.55430 -16.27775 -15.85727 -15.75675 -15.50874 -15.35260 -15.12326 -15.06422 -14.67203 -14.49953 -14.32144 -14.17954 -14.04665 -13.78711 -13.53196 -13.38402 -12.98643 -12.81574 -12.78326 -12.36325 -12.20102 -12.07723 -11.99797 -11.86932 -11.63354 -11.34740 -11.27430 -11.11600 -10.90048 -10.80221 -10.54913 -10.10265 -9.86668 -9.28588 -8.97393 -7.87568 -5.14370 -0.81651 0.13675 0.49452 0.55125 1.48760 1.51279 1.58639 1.79541 2.13578 2.59729 2.64582 2.94720 3.06700 3.46601 3.49154 3.65609 3.75579 3.86014 3.92188 3.95120 4.03398 4.13609 4.18550 4.31449 4.38448 4.48501 4.50923 4.57626 4.59620 4.64821 4.72071 4.84674 4.88236 4.98975 5.02230 5.10290 5.13323 5.16860 5.21741 5.37852 5.43147 5.55793 5.56903 5.58856 5.62122 5.62643 5.73704 6.04718 6.32619 6.46433 6.74416 7.08906 7.40899 8.12440 8.37020 9.35338 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.002704 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.202744 B =10352.664450 C =12511.144054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.163 3.837 4 H 0.060 0.940 5 C 0.122 3.878 6 N -0.704 5.704 7 C 0.561 3.439 8 O -0.576 6.576 9 C -0.201 4.201 10 C -0.015 4.015 11 C -0.163 4.163 12 C 0.178 3.822 13 C -0.080 4.080 14 C -0.098 4.098 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.125 4.125 18 C -0.097 4.097 19 N -0.503 5.503 20 C 0.142 3.858 21 N -0.728 5.728 22 C -0.213 4.213 23 H 0.081 0.919 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.956 3.044 27 H -0.265 1.265 28 H -0.303 1.303 29 H -0.300 1.300 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.409 0.591 38 H 0.161 0.839 39 H 0.181 0.819 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.162 0.838 46 H 0.372 0.628 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.746 10.807 -10.140 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.078 0.922 5 C -0.003 4.003 6 N -0.354 5.354 7 C 0.349 3.651 8 O -0.458 6.458 9 C -0.207 4.207 10 C -0.041 4.041 11 C -0.182 4.182 12 C 0.043 3.957 13 C -0.081 4.081 14 C -0.117 4.117 15 C -0.153 4.153 16 C -0.123 4.123 17 C -0.143 4.143 18 C -0.116 4.116 19 N -0.212 5.212 20 C -0.017 4.017 21 N -0.368 5.368 22 C -0.344 4.344 23 H 0.099 0.901 24 C -0.264 4.264 25 N -0.618 5.618 26 Si 0.787 3.213 27 H -0.189 1.189 28 H -0.231 1.231 29 H -0.228 1.228 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.247 0.753 38 H 0.179 0.821 39 H 0.198 0.802 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.175 0.825 44 H 0.169 0.831 45 H 0.179 0.821 46 H 0.204 0.796 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.457 10.854 -10.206 22.199 hybrid contribution -1.060 -0.197 0.917 1.415 sum 15.397 10.657 -9.289 20.903 Atomic orbital electron populations 1.21701 0.95986 1.00591 1.01803 1.21983 0.96619 0.97216 1.01145 1.20742 0.90803 0.93454 0.89551 0.92168 1.21658 0.94487 0.82219 1.01889 1.45919 1.06855 1.11117 1.71554 1.18201 0.82437 0.88209 0.76297 1.90715 1.56606 1.46512 1.51927 1.21006 0.96507 0.93847 1.09296 1.21856 0.93956 0.97869 0.90396 1.22351 1.02594 0.91430 1.01818 1.20434 0.88675 0.94359 0.92265 1.18688 0.94780 0.89700 1.04889 1.21454 0.99881 0.93144 0.97245 1.21423 0.97384 0.95924 1.00582 1.21708 0.92642 1.01035 0.96946 1.21477 1.01367 0.91902 0.99559 1.21565 0.93668 0.98409 0.97969 1.67644 1.17089 1.21880 1.14554 1.23028 1.00344 0.86964 0.91385 1.42592 1.15811 1.66081 1.12361 1.19517 0.92441 1.25098 0.97381 0.90114 1.25346 1.00805 1.03570 0.96724 1.69810 1.36714 1.51009 1.04294 0.85319 0.81151 0.77381 0.77437 1.18929 1.23076 1.22798 0.93288 0.93187 0.92871 0.90524 0.93549 0.89673 0.92689 0.75328 0.82122 0.80164 0.86381 0.84242 0.83104 0.82513 0.83069 0.82140 0.79597 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.99 0.66 -4.09 16 2 C -0.13 -4.11 5.61 30.59 0.17 -3.94 16 3 C 0.16 5.69 2.59 44.99 0.12 5.81 16 4 H 0.06 2.07 8.08 -2.38 -0.02 2.05 16 5 C 0.12 3.93 5.23 86.38 0.45 4.39 16 6 N -0.70 -23.26 5.34 -466.09 -2.49 -25.75 16 7 C 0.56 18.90 7.77 86.75 0.67 19.57 16 8 O -0.58 -21.87 16.41 -3.94 -0.06 -21.94 16 9 C -0.20 -5.99 5.89 -19.96 -0.12 -6.11 16 10 C -0.01 -0.36 9.70 22.70 0.22 -0.14 16 11 C -0.16 -3.36 9.44 22.53 0.21 -3.15 16 12 C 0.18 4.54 6.73 41.97 0.28 4.82 16 13 C -0.08 -1.76 5.88 -20.05 -0.12 -1.88 16 14 C -0.10 -2.23 9.57 22.50 0.22 -2.02 16 15 C -0.14 -2.31 10.03 22.24 0.22 -2.09 16 16 C -0.11 -1.36 10.04 22.32 0.22 -1.13 16 17 C -0.13 -1.51 10.03 22.23 0.22 -1.29 16 18 C -0.10 -1.49 9.42 22.50 0.21 -1.27 16 19 N -0.50 -15.32 9.40 -183.83 -1.73 -17.04 16 20 C 0.14 4.34 10.70 85.08 0.91 5.25 16 21 N -0.73 -32.54 4.51 -322.95 -1.46 -34.00 16 22 C -0.21 -10.57 7.75 84.03 0.65 -9.92 16 23 H 0.08 3.87 7.32 -2.91 -0.02 3.85 16 24 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 25 N -0.97 -56.86 13.06 21.65 0.28 -56.58 16 26 Si 0.96 44.68 29.55 68.60 2.03 46.71 16 27 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 28 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 29 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 30 H 0.05 1.98 5.99 -2.39 -0.01 1.97 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 13.74 6.19 -92.71 -0.57 13.17 16 38 H 0.16 3.48 7.73 -2.91 -0.02 3.46 16 39 H 0.18 2.18 6.17 -2.91 -0.02 2.16 16 40 H 0.12 3.03 7.53 -2.91 -0.02 3.01 16 41 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 43 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.15 1.45 6.17 -2.91 -0.02 1.43 16 45 H 0.16 4.88 6.41 -2.91 -0.02 4.86 16 46 H 0.37 18.67 7.80 -92.71 -0.72 17.95 16 47 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -67.37 391.39 1.97 -65.40 By element: Atomic # 1 Polarization: 44.13 SS G_CDS: -0.29 Total: 43.84 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 5.68 Total: -0.64 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -5.39 Total: -133.37 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -67.37 1.97 -65.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714115470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.335 kcal (2) G-P(sol) polarization free energy of solvation -67.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds