Wall clock time and date at job start Tue Mar 31 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30270 * 126.28205 * 2 1 4 4 N 1.28669 * 109.38126 * 180.02562 * 3 2 1 5 5 C 1.30271 * 109.37828 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.28266 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47148 * 90.02324 * 6 5 4 8 8 O 1.21283 * 119.99803 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.28037 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 C 1.52999 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47306 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47324 * 55.00182 * 12 11 10 14 14 C 1.53000 * 109.47324 * 174.99912 * 12 11 10 15 15 N 1.46898 * 109.47193 * 294.99854 * 12 11 10 16 16 C 1.46902 * 111.00056 * 154.99699 * 15 12 11 17 17 C 1.50699 * 109.46851 * 180.02562 * 16 15 12 18 18 O 1.21287 * 120.00301 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99808 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00144 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00010 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00118 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99682 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99949 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47458 * 89.99435 * 24 22 20 26 26 H 1.48500 * 109.47062 * 209.99466 * 24 22 20 27 27 H 1.48498 * 109.46879 * 329.98753 * 24 22 20 28 28 O 1.34361 * 126.27909 * 180.28735 * 2 1 3 29 29 H 1.08999 * 109.46890 * 89.97903 * 1 2 3 30 30 H 1.09001 * 109.47183 * 209.97670 * 1 2 3 31 31 H 1.08998 * 109.46999 * 329.98025 * 1 2 3 32 32 H 1.09009 * 109.46601 * 330.02345 * 6 5 4 33 33 H 1.08998 * 109.47035 * 210.02853 * 6 5 4 34 34 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 35 35 H 1.08995 * 109.47421 * 299.99467 * 10 9 7 36 36 H 1.09001 * 109.47621 * 60.00103 * 10 9 7 37 37 H 1.09009 * 109.47378 * 299.99899 * 11 10 9 38 38 H 1.08993 * 109.47209 * 59.99808 * 11 10 9 39 39 H 1.09003 * 109.47314 * 299.99827 * 14 12 11 40 40 H 1.09001 * 109.47128 * 60.00211 * 14 12 11 41 41 H 1.08998 * 109.47616 * 179.97438 * 14 12 11 42 42 H 1.00899 * 110.99718 * 31.05007 * 15 12 11 43 43 H 1.08993 * 109.47132 * 300.00057 * 16 15 12 44 44 H 1.09004 * 109.46762 * 60.00552 * 16 15 12 45 45 H 0.97003 * 119.99961 * 359.97438 * 19 17 16 46 46 H 0.97006 * 119.99265 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8176 -1.4639 -0.0014 7 6 5.2361 -1.7436 1.4191 8 8 4.5816 -1.3056 2.3415 9 7 6.3405 -2.4761 1.6644 10 6 6.7506 -2.7430 3.0453 11 6 8.0247 -3.5900 3.0442 12 6 8.4527 -3.8692 4.4863 13 1 7.6260 -4.3285 5.0283 14 6 9.6529 -4.8181 4.4875 15 7 8.8255 -2.6074 5.1396 16 6 8.6686 -2.7027 6.5971 17 6 9.0589 -1.3924 7.2310 18 8 9.4306 -0.4698 6.5369 19 7 8.9948 -1.2457 8.5692 20 6 9.3503 -0.0539 9.1460 21 1 9.6813 0.7677 8.5280 22 6 9.2838 0.0975 10.5257 23 7 9.6241 1.2402 11.0784 24 14 8.7106 -1.3232 11.5946 25 1 9.8802 -2.1480 11.9906 26 1 8.0458 -0.7906 12.8110 27 1 7.7500 -2.1602 10.8319 28 8 2.3021 -1.0831 -0.0054 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 5.6143 -0.9263 -0.5157 33 1 4.6240 -2.4054 -0.5153 34 1 6.8637 -2.8267 0.9266 35 1 6.9416 -1.7994 3.5563 36 1 5.9568 -3.2821 3.5624 37 1 7.8333 -4.5337 2.5332 38 1 8.8186 -3.0513 2.5271 39 1 9.3763 -5.7545 4.0029 40 1 10.4797 -4.3588 3.9457 41 1 9.9581 -5.0167 5.5149 42 1 8.2911 -1.8363 4.7681 43 1 7.6292 -2.9265 6.8368 44 1 9.3092 -3.4971 6.9802 45 1 8.6972 -1.9834 9.1243 46 1 9.5780 1.3456 12.0416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714466376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:15 Heat of formation + Delta-G solvation = -31.985611 kcal Electronic energy + Delta-G solvation = -28199.276034 eV Core-core repulsion = 23933.271999 eV Total energy + Delta-G solvation = -4266.004035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.53725 -40.15066 -38.65959 -37.35195 -36.46916 -35.05582 -34.02432 -33.92604 -31.99486 -31.61612 -31.16122 -29.15714 -27.54267 -26.58067 -24.24093 -23.57219 -23.03039 -22.66640 -21.19765 -20.35566 -19.36469 -18.38080 -18.15301 -17.59196 -17.04780 -16.67940 -16.37636 -16.02002 -15.57426 -15.40881 -15.00353 -14.80937 -14.72847 -14.24173 -14.01074 -13.88908 -13.64969 -13.40889 -13.24903 -13.14334 -12.82699 -12.66845 -12.64727 -12.32093 -12.17145 -12.13356 -12.00360 -11.78314 -11.44625 -11.37882 -11.26536 -11.17322 -10.90696 -10.57347 -10.45766 -9.94758 -9.78816 -9.54629 -9.49102 -8.56090 -8.19096 -8.13678 -6.28180 -3.79433 0.76934 1.79858 2.05535 2.15064 2.74362 3.04605 3.08615 3.16761 3.37431 3.76619 3.95162 4.05974 4.13053 4.16706 4.31120 4.48639 4.54523 4.73323 4.78246 4.79141 4.83451 4.89319 4.98115 5.14189 5.17539 5.23010 5.26130 5.28960 5.40961 5.43182 5.58058 5.66306 5.71883 5.76667 5.85407 5.94273 5.95632 5.98912 6.24375 6.98536 7.10447 7.55767 7.61112 7.73556 7.99240 8.17601 8.62617 8.97985 9.45322 9.85577 10.84993 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.002026 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.520047 B =13817.749576 C =15540.824163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.165 3.835 3 N -0.286 5.286 4 N -0.269 5.269 5 C 0.179 3.821 6 C -0.044 4.044 7 C 0.515 3.485 8 O -0.523 6.523 9 N -0.722 5.722 10 C 0.112 3.888 11 C -0.132 4.132 12 C 0.086 3.914 13 H 0.045 0.955 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.047 3.953 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 O -0.222 6.222 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.351 0.649 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 -16.222 -25.109 32.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 N -0.134 5.134 4 N -0.115 5.115 5 C -0.033 4.033 6 C -0.086 4.086 7 C 0.299 3.701 8 O -0.398 6.398 9 N -0.374 5.374 10 C -0.011 4.011 11 C -0.170 4.170 12 C -0.025 4.025 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.086 4.086 17 C 0.235 3.765 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 O -0.101 6.101 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.172 0.828 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.032 -14.029 -24.684 31.240 hybrid contribution -1.452 -2.384 0.912 2.937 sum -14.485 -16.413 -23.773 32.316 Atomic orbital electron populations 1.20379 0.80043 1.05967 1.05193 1.28030 0.97854 0.79504 0.99152 1.74418 0.95929 1.25540 1.17505 1.74387 1.12384 1.08849 1.15903 1.26793 0.84684 0.91347 1.00442 1.20074 0.90384 1.00692 0.97414 1.20052 0.81192 0.78683 0.90192 1.90830 1.53289 1.49830 1.45825 1.45802 1.27520 1.54543 1.09576 1.21543 0.96675 1.00742 0.82187 1.21986 0.96688 1.00345 0.98023 1.21461 0.96607 0.91553 0.92853 0.93732 1.21789 0.98090 0.97490 1.02360 1.60199 1.62381 1.04476 1.03043 1.21761 0.99665 0.98044 0.89094 1.19712 0.84702 0.89425 0.82649 1.90567 1.50398 1.41987 1.61603 1.42205 1.60662 1.14304 1.05860 1.19437 1.41460 0.90900 0.91493 0.86273 1.25047 0.97712 0.96918 0.96570 1.69629 1.47300 1.23577 1.11628 0.86662 0.79277 0.82301 0.81089 1.19608 1.20197 1.19553 1.84732 1.17351 1.38407 1.69654 0.88247 0.88801 0.87349 0.83861 0.85330 0.76175 0.90596 0.91279 0.90481 0.89776 0.92826 0.91712 0.92426 0.82765 0.93749 0.89422 0.79722 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.17 1.67 8.48 -12.94 -0.11 1.56 16 3 N -0.29 -3.87 12.22 32.55 0.40 -3.47 16 4 N -0.27 -3.77 12.22 32.55 0.40 -3.37 16 5 C 0.18 1.97 6.97 -12.94 -0.09 1.88 16 6 C -0.04 -0.28 6.33 -29.03 -0.18 -0.46 16 7 C 0.52 5.14 7.82 -10.98 -0.09 5.05 16 8 O -0.52 -8.24 16.03 5.55 0.09 -8.16 16 9 N -0.72 -5.22 5.56 -60.30 -0.33 -5.55 16 10 C 0.11 1.06 5.50 -4.04 -0.02 1.03 16 11 C -0.13 -1.02 4.92 -26.73 -0.13 -1.15 16 12 C 0.09 0.89 2.65 -67.71 -0.18 0.71 16 13 H 0.04 0.45 7.80 -51.93 -0.40 0.04 16 14 C -0.14 -1.33 9.41 37.16 0.35 -0.98 16 15 N -0.67 -9.97 5.93 -107.99 -0.64 -10.61 16 16 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 17 C 0.45 10.43 7.82 -10.98 -0.09 10.34 16 18 O -0.56 -15.48 15.78 5.55 0.09 -15.40 16 19 N -0.59 -14.40 5.09 -10.96 -0.06 -14.46 16 20 C -0.30 -8.80 10.16 -14.93 -0.15 -8.96 16 21 H 0.12 3.94 7.39 -52.48 -0.39 3.55 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -26.24 13.96 55.50 0.77 -25.46 16 24 Si 0.88 19.75 27.74 -169.99 -4.71 15.03 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.53 6.52 56.52 0.37 -5.17 16 28 O -0.22 -2.36 10.87 5.38 0.06 -2.31 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.14 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.40 1.32 8.47 -40.82 -0.35 0.98 16 35 H 0.08 0.95 6.43 -51.93 -0.33 0.61 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 42 H 0.35 5.62 6.17 -39.29 -0.24 5.38 16 43 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 44 H 0.09 1.30 7.44 -51.93 -0.39 0.91 16 45 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -41.29 392.87 -5.00 -46.29 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.54 Total: 10.60 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -0.44 Total: 10.95 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.54 Total: -62.93 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: 0.24 Total: -25.86 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.71 Total: 15.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -41.29 -5.00 -46.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714466376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.302 kcal (2) G-P(sol) polarization free energy of solvation -41.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds