Wall clock time and date at job start Tue Mar 31 2020 22:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30270 * 126.28205 * 2 1 4 4 N 1.28669 * 109.38126 * 180.02562 * 3 2 1 5 5 C 1.30271 * 109.37828 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.28266 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47148 * 90.02324 * 6 5 4 8 8 O 1.21283 * 119.99803 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.28037 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 C 1.52999 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47306 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47324 * 55.00182 * 12 11 10 14 14 C 1.53000 * 109.47324 * 174.99912 * 12 11 10 15 15 N 1.46898 * 109.47193 * 294.99854 * 12 11 10 16 16 C 1.46902 * 111.00056 * 154.99699 * 15 12 11 17 17 C 1.50699 * 109.46851 * 180.02562 * 16 15 12 18 18 O 1.21287 * 120.00301 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99808 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00144 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00010 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00118 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99682 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99949 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47458 * 89.99435 * 24 22 20 26 26 H 1.48500 * 109.47062 * 209.99466 * 24 22 20 27 27 H 1.48498 * 109.46879 * 329.98753 * 24 22 20 28 28 O 1.34361 * 126.27909 * 180.28735 * 2 1 3 29 29 H 1.08999 * 109.46890 * 89.97903 * 1 2 3 30 30 H 1.09001 * 109.47183 * 209.97670 * 1 2 3 31 31 H 1.08998 * 109.46999 * 329.98025 * 1 2 3 32 32 H 1.09009 * 109.46601 * 330.02345 * 6 5 4 33 33 H 1.08998 * 109.47035 * 210.02853 * 6 5 4 34 34 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 35 35 H 1.08995 * 109.47421 * 299.99467 * 10 9 7 36 36 H 1.09001 * 109.47621 * 60.00103 * 10 9 7 37 37 H 1.09009 * 109.47378 * 299.99899 * 11 10 9 38 38 H 1.08993 * 109.47209 * 59.99808 * 11 10 9 39 39 H 1.09003 * 109.47314 * 299.99827 * 14 12 11 40 40 H 1.09001 * 109.47128 * 60.00211 * 14 12 11 41 41 H 1.08998 * 109.47616 * 179.97438 * 14 12 11 42 42 H 1.00899 * 110.99718 * 31.05007 * 15 12 11 43 43 H 1.08993 * 109.47132 * 300.00057 * 16 15 12 44 44 H 1.09004 * 109.46762 * 60.00552 * 16 15 12 45 45 H 0.97003 * 119.99961 * 359.97438 * 19 17 16 46 46 H 0.97006 * 119.99265 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8176 -1.4639 -0.0014 7 6 5.2361 -1.7436 1.4191 8 8 4.5816 -1.3056 2.3415 9 7 6.3405 -2.4761 1.6644 10 6 6.7506 -2.7430 3.0453 11 6 8.0247 -3.5900 3.0442 12 6 8.4527 -3.8692 4.4863 13 1 7.6260 -4.3285 5.0283 14 6 9.6529 -4.8181 4.4875 15 7 8.8255 -2.6074 5.1396 16 6 8.6686 -2.7027 6.5971 17 6 9.0589 -1.3924 7.2310 18 8 9.4306 -0.4698 6.5369 19 7 8.9948 -1.2457 8.5692 20 6 9.3503 -0.0539 9.1460 21 1 9.6813 0.7677 8.5280 22 6 9.2838 0.0975 10.5257 23 7 9.6241 1.2402 11.0784 24 14 8.7106 -1.3232 11.5946 25 1 9.8802 -2.1480 11.9906 26 1 8.0458 -0.7906 12.8110 27 1 7.7500 -2.1602 10.8319 28 8 2.3021 -1.0831 -0.0054 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 5.6143 -0.9263 -0.5157 33 1 4.6240 -2.4054 -0.5153 34 1 6.8637 -2.8267 0.9266 35 1 6.9416 -1.7994 3.5563 36 1 5.9568 -3.2821 3.5624 37 1 7.8333 -4.5337 2.5332 38 1 8.8186 -3.0513 2.5271 39 1 9.3763 -5.7545 4.0029 40 1 10.4797 -4.3588 3.9457 41 1 9.9581 -5.0167 5.5149 42 1 8.2911 -1.8363 4.7681 43 1 7.6292 -2.9265 6.8368 44 1 9.3092 -3.4971 6.9802 45 1 8.6972 -1.9834 9.1243 46 1 9.5780 1.3456 12.0416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714466376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:14 Heat of formation + Delta-G solvation = -72.721895 kcal Electronic energy + Delta-G solvation = -28201.042492 eV Core-core repulsion = 23933.271999 eV Total energy + Delta-G solvation = -4267.770493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.33293 -40.95944 -40.37211 -38.45977 -37.29945 -36.15017 -35.79687 -34.70570 -33.79526 -32.84515 -31.91083 -29.87583 -28.30339 -28.12288 -25.71688 -24.64676 -23.78599 -23.42893 -21.96739 -21.35676 -21.14172 -20.30488 -18.96435 -18.35052 -17.96478 -17.67705 -17.42908 -17.03895 -16.94286 -16.60808 -16.31819 -15.74253 -15.66653 -15.39486 -15.08192 -14.97673 -14.73471 -14.44900 -14.34210 -14.00738 -13.94964 -13.62111 -13.52906 -13.41865 -13.39500 -13.15986 -12.99512 -12.91578 -12.57484 -12.44419 -12.26101 -12.18423 -12.05265 -11.99370 -11.76354 -11.53766 -11.30565 -10.57950 -10.46496 -10.27581 -10.24947 -9.33228 -8.43755 -6.04932 0.02229 1.12425 1.25023 1.27719 1.33540 1.41131 1.42447 1.92565 2.08193 2.20886 2.72006 2.75645 3.12024 3.35033 3.39329 3.58267 3.78081 3.80967 3.98176 4.07958 4.11356 4.15145 4.31125 4.38616 4.38907 4.46722 4.53207 4.53773 4.54248 4.59914 4.67859 4.69312 4.98935 5.01085 5.02417 5.06068 5.21314 5.30338 5.49627 5.52112 5.89269 6.08543 6.38120 6.39373 6.57066 6.85209 7.09864 7.17222 7.36609 7.93511 8.74051 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.002026 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.520047 B =13817.749576 C =15540.824163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.172 3.828 3 N -0.335 5.335 4 N -0.317 5.317 5 C 0.178 3.822 6 C -0.037 4.037 7 C 0.511 3.489 8 O -0.591 6.591 9 N -0.701 5.701 10 C 0.114 3.886 11 C -0.118 4.118 12 C 0.082 3.918 13 H 0.056 0.944 14 C -0.136 4.136 15 N -0.685 5.685 16 C 0.062 3.938 17 C 0.446 3.554 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.053 0.947 22 C -0.017 4.017 23 N -0.934 5.934 24 Si 0.967 3.033 25 H -0.254 1.254 26 H -0.274 1.274 27 H -0.233 1.233 28 O -0.226 6.226 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.172 0.828 33 H 0.180 0.820 34 H 0.427 0.573 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.340 0.660 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 -21.283 -26.187 36.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.040 4.040 3 N -0.182 5.182 4 N -0.162 5.162 5 C -0.035 4.035 6 C -0.077 4.077 7 C 0.297 3.703 8 O -0.471 6.471 9 N -0.354 5.354 10 C -0.010 4.010 11 C -0.156 4.156 12 C -0.028 4.028 13 H 0.074 0.926 14 C -0.194 4.194 15 N -0.320 5.320 16 C -0.071 4.071 17 C 0.234 3.766 18 O -0.500 6.500 19 N -0.233 5.233 20 C -0.460 4.460 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.575 5.575 24 Si 0.787 3.213 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.156 1.156 28 O -0.106 6.106 29 H 0.145 0.855 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.190 0.810 33 H 0.197 0.803 34 H 0.266 0.734 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.160 0.840 43 H 0.089 0.911 44 H 0.134 0.866 45 H 0.225 0.775 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.237 -19.132 -25.825 35.152 hybrid contribution -1.036 -0.743 1.145 1.713 sum -15.273 -19.875 -24.681 35.177 Atomic orbital electron populations 1.20740 0.76379 1.07128 1.07280 1.29093 0.99531 0.78734 0.96593 1.74312 0.96401 1.27373 1.20082 1.74271 1.13164 1.10775 1.18000 1.27624 0.85962 0.91156 0.98741 1.20393 0.89164 1.02781 0.95353 1.20686 0.80897 0.77708 0.91000 1.90808 1.55572 1.52622 1.48122 1.45612 1.26771 1.53375 1.09635 1.21394 0.97499 0.99163 0.82947 1.21909 0.95309 1.01666 0.96682 1.21661 0.97535 0.89526 0.94032 0.92573 1.21786 0.97190 0.98391 1.02057 1.60256 1.63075 1.06431 1.02199 1.21682 1.01497 0.93983 0.89928 1.21075 0.82276 0.91249 0.82041 1.90541 1.52066 1.44621 1.62749 1.42037 1.61208 1.13353 1.06665 1.19007 1.43616 0.91483 0.91854 0.92866 1.26170 0.96903 1.00803 0.97713 1.69816 1.48375 1.26764 1.12509 0.85332 0.79867 0.77877 0.78230 1.17784 1.19952 1.15636 1.84755 1.17452 1.38545 1.69868 0.85477 0.86885 0.86792 0.81015 0.80313 0.73444 0.94396 0.91891 0.86680 0.89804 0.89750 0.92734 0.93318 0.83962 0.91112 0.86605 0.77461 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 71.24 0.75 0.31 16 2 C 0.17 3.46 8.48 88.34 0.75 4.21 16 3 N -0.34 -9.45 12.22 -165.50 -2.02 -11.47 16 4 N -0.32 -9.24 12.22 -165.50 -2.02 -11.26 16 5 C 0.18 3.86 6.97 88.34 0.62 4.48 16 6 C -0.04 -0.38 6.33 29.10 0.18 -0.20 16 7 C 0.51 9.71 7.82 87.66 0.69 10.39 16 8 O -0.59 -19.26 16.03 -3.04 -0.05 -19.31 16 9 N -0.70 -8.69 5.56 -463.07 -2.57 -11.27 16 10 C 0.11 2.02 5.50 86.38 0.48 2.49 16 11 C -0.12 -1.45 4.92 30.59 0.15 -1.30 16 12 C 0.08 1.46 2.65 44.91 0.12 1.58 16 13 H 0.06 0.92 7.80 -2.39 -0.02 0.90 16 14 C -0.14 -2.11 9.41 71.98 0.68 -1.44 16 15 N -0.68 -19.84 5.93 -495.58 -2.94 -22.78 16 16 C 0.06 1.94 5.97 85.56 0.51 2.45 16 17 C 0.45 21.01 7.82 87.66 0.69 21.69 16 18 O -0.62 -35.62 15.78 -3.05 -0.05 -35.67 16 19 N -0.59 -28.99 5.09 -306.98 -1.56 -30.55 16 20 C -0.33 -20.06 10.16 84.04 0.85 -19.21 16 21 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 22 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 23 N -0.93 -57.83 13.96 21.66 0.30 -57.53 16 24 Si 0.97 39.89 27.74 68.60 1.90 41.79 16 25 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.23 -8.15 6.52 99.48 0.65 -7.50 16 28 O -0.23 -4.68 10.87 -3.65 -0.04 -4.72 16 29 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.17 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.18 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.43 1.25 8.47 -92.71 -0.79 0.47 16 35 H 0.04 0.98 6.43 -2.39 -0.02 0.97 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.85 7.45 -2.39 -0.02 0.83 16 42 H 0.34 11.11 6.17 -89.70 -0.55 10.56 16 43 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 44 H 0.12 3.05 7.44 -2.38 -0.02 3.03 16 45 H 0.39 15.80 5.76 -92.71 -0.53 15.27 16 46 H 0.28 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -102.39 392.87 -3.02 -105.41 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.89 Total: 32.40 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 6.92 Total: 24.95 kcal Atomic # 7 Polarization: -134.04 SS G_CDS: -10.82 Total: -144.85 kcal Atomic # 8 Polarization: -59.56 SS G_CDS: -0.14 Total: -59.70 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.79 kcal Total: -102.39 -3.02 -105.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714466376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.685 kcal (2) G-P(sol) polarization free energy of solvation -102.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds