Wall clock time and date at job start Tue Mar 31 2020 22:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30283 * 126.27968 * 2 1 4 4 N 1.28665 * 109.37783 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.38224 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.28081 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47064 * 90.02814 * 6 5 4 8 8 O 1.21280 * 119.99781 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99622 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47563 * 305.00337 * 12 11 10 14 14 C 1.52997 * 109.47448 * 184.99813 * 12 11 10 15 15 N 1.46910 * 109.47127 * 65.00091 * 12 11 10 16 16 C 1.46900 * 111.00108 * 205.00462 * 15 12 11 17 17 C 1.50692 * 109.47257 * 179.97438 * 16 15 12 18 18 O 1.21300 * 119.99825 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00248 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00059 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00291 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00022 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00228 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99784 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47391 * 90.00443 * 24 22 20 26 26 H 1.48500 * 109.47102 * 209.99830 * 24 22 20 27 27 H 1.48497 * 109.47287 * 330.00242 * 24 22 20 28 28 O 1.34360 * 126.28459 * 180.28566 * 2 1 3 29 29 H 1.09002 * 109.46937 * 89.97470 * 1 2 3 30 30 H 1.08998 * 109.46868 * 209.97415 * 1 2 3 31 31 H 1.09001 * 109.47263 * 329.97545 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.02621 * 6 5 4 33 33 H 1.09002 * 109.47152 * 210.02721 * 6 5 4 34 34 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 36 36 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 37 37 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 38 38 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 39 39 H 1.09004 * 109.47224 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.47346 * 300.00002 * 14 12 11 41 41 H 1.09007 * 109.46964 * 60.00529 * 14 12 11 42 42 H 1.00903 * 110.99433 * 328.95625 * 15 12 11 43 43 H 1.09001 * 109.46729 * 299.99669 * 16 15 12 44 44 H 1.08996 * 109.47288 * 59.99365 * 16 15 12 45 45 H 0.96995 * 120.00099 * 0.02562 * 19 17 16 46 46 H 0.96996 * 120.00445 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2780 1.0503 0.0000 4 7 3.5090 0.6762 -0.0005 5 6 3.5654 -0.6253 -0.0004 6 6 4.8177 -1.4637 -0.0014 7 6 5.2361 -1.7435 1.4191 8 8 4.5820 -1.3048 2.3414 9 7 6.3376 -2.4802 1.6644 10 6 6.7447 -2.7517 3.0453 11 6 8.0160 -3.6029 3.0443 12 6 8.4414 -3.8859 4.4864 13 1 8.5493 -2.9444 5.0249 14 6 9.7784 -4.6299 4.4871 15 7 7.4209 -4.7125 5.1448 16 6 7.4519 -4.5261 6.6016 17 6 6.3934 -5.3873 7.2409 18 8 5.6826 -6.0872 6.5508 19 7 6.2364 -5.3799 8.5794 20 6 5.2737 -6.1638 9.1611 21 1 4.6409 -6.7870 8.5467 22 6 5.1115 -6.1558 10.5411 23 7 4.1885 -6.9068 11.0986 24 14 6.2057 -5.0774 11.6038 25 1 5.5740 -3.7439 11.7711 26 1 6.3829 -5.7116 12.9349 27 1 7.5298 -4.9195 10.9504 28 8 2.3022 -1.0830 -0.0054 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5142 32 1 5.6144 -0.9261 -0.5157 33 1 4.6242 -2.4053 -0.5153 34 1 6.8610 -2.8307 0.9268 35 1 6.9380 -1.8099 3.5590 36 1 5.9482 -3.2894 3.5599 37 1 7.8223 -4.5447 2.5308 38 1 8.8126 -3.0657 2.5297 39 1 10.0812 -4.8319 5.5145 40 1 9.6705 -5.5715 3.9487 41 1 10.5357 -4.0166 3.9986 42 1 6.5029 -4.5164 4.7747 43 1 8.4323 -4.8112 6.9835 44 1 7.2601 -3.4796 6.8382 45 1 6.8045 -4.8200 9.1313 46 1 4.0755 -6.9015 12.0619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714466377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:18 Heat of formation + Delta-G solvation = -32.657508 kcal Electronic energy + Delta-G solvation = -28221.224793 eV Core-core repulsion = 23955.191623 eV Total energy + Delta-G solvation = -4266.033170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.53215 -40.15025 -38.67169 -37.35861 -36.46302 -35.05719 -34.01794 -33.94060 -31.99438 -31.62931 -31.15880 -29.15467 -27.53405 -26.59225 -24.24458 -23.57760 -23.02054 -22.66677 -21.19685 -20.35844 -19.38153 -18.39220 -18.15054 -17.57640 -17.04184 -16.69567 -16.29512 -16.12907 -15.48786 -15.44194 -15.02257 -14.84211 -14.68619 -14.23566 -14.02795 -13.89080 -13.61777 -13.41536 -13.22358 -13.13084 -12.82527 -12.67567 -12.66750 -12.33181 -12.18529 -12.15106 -12.00270 -11.78080 -11.44493 -11.38902 -11.28503 -11.18270 -10.90939 -10.58610 -10.45574 -9.96584 -9.78100 -9.56270 -9.49046 -8.57683 -8.20811 -8.15040 -6.30095 -3.81438 0.77745 1.81717 2.04201 2.15321 2.74577 3.03505 3.07880 3.15884 3.37871 3.75008 3.95419 4.04930 4.11664 4.17779 4.33123 4.48712 4.54626 4.73581 4.77789 4.82890 4.84406 4.89136 4.99056 5.16308 5.18386 5.22009 5.25493 5.29751 5.42635 5.44296 5.57929 5.65746 5.71841 5.76080 5.85160 5.93239 5.95247 5.98907 6.24141 6.98648 7.09412 7.54660 7.59343 7.73666 7.98182 8.15519 8.60764 8.95963 9.43480 9.83665 10.83066 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010597 B = 0.002076 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.532999 B =13483.947205 C =15426.087980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.168 3.832 3 N -0.289 5.289 4 N -0.273 5.273 5 C 0.180 3.820 6 C -0.045 4.045 7 C 0.515 3.485 8 O -0.523 6.523 9 N -0.722 5.722 10 C 0.112 3.888 11 C -0.132 4.132 12 C 0.086 3.914 13 H 0.045 0.955 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.047 3.953 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 O -0.219 6.219 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.350 0.650 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 12.577 -25.164 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.042 4.042 3 N -0.137 5.137 4 N -0.119 5.119 5 C -0.032 4.032 6 C -0.086 4.086 7 C 0.299 3.701 8 O -0.398 6.398 9 N -0.374 5.374 10 C -0.011 4.011 11 C -0.170 4.170 12 C -0.025 4.025 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.086 4.086 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 O -0.098 6.098 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.172 0.828 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.968 13.015 -24.733 28.387 hybrid contribution 0.342 0.244 0.907 1.000 sum 5.310 13.260 -23.826 27.779 Atomic orbital electron populations 1.20396 0.80002 1.06084 1.05229 1.28042 0.97889 0.79449 0.98854 1.74395 0.95913 1.25558 1.17823 1.74341 1.12493 1.08870 1.16238 1.26777 0.84772 0.91292 1.00359 1.20073 0.90301 1.00814 0.97420 1.20048 0.81070 0.78798 0.90191 1.90830 1.52962 1.50161 1.45825 1.45802 1.27844 1.54223 1.09577 1.21546 0.97324 1.00092 0.82188 1.21983 0.96426 1.00620 0.98006 1.21465 0.93509 0.94691 0.92832 0.93672 1.21789 0.94885 1.00705 1.02349 1.60204 1.09330 1.57588 1.02970 1.21761 0.99950 0.97783 0.89093 1.19711 0.87266 0.86837 0.82647 1.90564 1.47968 1.44254 1.61906 1.42206 1.33674 1.41256 1.05864 1.19431 1.11360 1.21080 0.91452 0.86293 1.25042 0.97119 0.97488 0.96551 1.69618 1.32294 1.38707 1.11532 0.86670 0.80565 0.81095 0.81058 1.19645 1.20154 1.19474 1.84755 1.17311 1.38350 1.69417 0.88213 0.88617 0.87369 0.84013 0.85179 0.76177 0.91180 0.90685 0.89834 0.90425 0.92430 0.91737 0.92789 0.82827 0.89413 0.93706 0.79697 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.17 1.75 8.48 -12.93 -0.11 1.64 16 3 N -0.29 -3.82 12.22 32.55 0.40 -3.42 16 4 N -0.27 -3.67 12.22 32.55 0.40 -3.28 16 5 C 0.18 1.98 6.97 -12.94 -0.09 1.89 16 6 C -0.04 -0.28 6.33 -29.03 -0.18 -0.47 16 7 C 0.52 5.14 7.82 -10.99 -0.09 5.05 16 8 O -0.52 -8.24 16.03 5.56 0.09 -8.15 16 9 N -0.72 -5.21 5.56 -60.29 -0.33 -5.55 16 10 C 0.11 1.05 5.50 -4.04 -0.02 1.03 16 11 C -0.13 -1.01 4.92 -26.74 -0.13 -1.15 16 12 C 0.09 0.89 2.65 -67.71 -0.18 0.71 16 13 H 0.05 0.46 7.80 -51.93 -0.40 0.05 16 14 C -0.14 -1.33 9.41 37.16 0.35 -0.98 16 15 N -0.67 -9.88 5.93 -108.00 -0.64 -10.52 16 16 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 17 C 0.45 10.34 7.82 -10.99 -0.09 10.25 16 18 O -0.57 -15.34 15.78 5.54 0.09 -15.25 16 19 N -0.59 -14.29 5.09 -10.96 -0.06 -14.35 16 20 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 21 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.05 13.96 55.50 0.77 -25.28 16 24 Si 0.88 19.64 27.74 -169.99 -4.71 14.92 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 28 O -0.22 -2.46 10.87 5.40 0.06 -2.40 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.13 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.40 1.32 8.47 -40.82 -0.35 0.98 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.91 6.43 -51.93 -0.33 0.58 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 42 H 0.35 5.52 6.17 -39.29 -0.24 5.28 16 43 H 0.09 1.30 7.44 -51.93 -0.39 0.92 16 44 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 45 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 46 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -40.76 392.87 -4.99 -45.76 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.54 Total: 10.64 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -0.44 Total: 10.96 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.54 Total: -62.39 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: 0.24 Total: -25.81 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.76 -4.99 -45.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714466377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.100 kcal (2) G-P(sol) polarization free energy of solvation -40.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds