Wall clock time and date at job start Tue Mar 31 2020 22:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30283 * 126.27968 * 2 1 4 4 N 1.28665 * 109.37783 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.38224 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.28081 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47064 * 90.02814 * 6 5 4 8 8 O 1.21280 * 119.99781 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99622 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47563 * 305.00337 * 12 11 10 14 14 C 1.52997 * 109.47448 * 184.99813 * 12 11 10 15 15 N 1.46910 * 109.47127 * 65.00091 * 12 11 10 16 16 C 1.46900 * 111.00108 * 205.00462 * 15 12 11 17 17 C 1.50692 * 109.47257 * 179.97438 * 16 15 12 18 18 O 1.21300 * 119.99825 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00248 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00059 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00291 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00022 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00228 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99784 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47391 * 90.00443 * 24 22 20 26 26 H 1.48500 * 109.47102 * 209.99830 * 24 22 20 27 27 H 1.48497 * 109.47287 * 330.00242 * 24 22 20 28 28 O 1.34360 * 126.28459 * 180.28566 * 2 1 3 29 29 H 1.09002 * 109.46937 * 89.97470 * 1 2 3 30 30 H 1.08998 * 109.46868 * 209.97415 * 1 2 3 31 31 H 1.09001 * 109.47263 * 329.97545 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.02621 * 6 5 4 33 33 H 1.09002 * 109.47152 * 210.02721 * 6 5 4 34 34 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 36 36 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 37 37 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 38 38 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 39 39 H 1.09004 * 109.47224 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.47346 * 300.00002 * 14 12 11 41 41 H 1.09007 * 109.46964 * 60.00529 * 14 12 11 42 42 H 1.00903 * 110.99433 * 328.95625 * 15 12 11 43 43 H 1.09001 * 109.46729 * 299.99669 * 16 15 12 44 44 H 1.08996 * 109.47288 * 59.99365 * 16 15 12 45 45 H 0.96995 * 120.00099 * 0.02562 * 19 17 16 46 46 H 0.96996 * 120.00445 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2780 1.0503 0.0000 4 7 3.5090 0.6762 -0.0005 5 6 3.5654 -0.6253 -0.0004 6 6 4.8177 -1.4637 -0.0014 7 6 5.2361 -1.7435 1.4191 8 8 4.5820 -1.3048 2.3414 9 7 6.3376 -2.4802 1.6644 10 6 6.7447 -2.7517 3.0453 11 6 8.0160 -3.6029 3.0443 12 6 8.4414 -3.8859 4.4864 13 1 8.5493 -2.9444 5.0249 14 6 9.7784 -4.6299 4.4871 15 7 7.4209 -4.7125 5.1448 16 6 7.4519 -4.5261 6.6016 17 6 6.3934 -5.3873 7.2409 18 8 5.6826 -6.0872 6.5508 19 7 6.2364 -5.3799 8.5794 20 6 5.2737 -6.1638 9.1611 21 1 4.6409 -6.7870 8.5467 22 6 5.1115 -6.1558 10.5411 23 7 4.1885 -6.9068 11.0986 24 14 6.2057 -5.0774 11.6038 25 1 5.5740 -3.7439 11.7711 26 1 6.3829 -5.7116 12.9349 27 1 7.5298 -4.9195 10.9504 28 8 2.3022 -1.0830 -0.0054 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5142 32 1 5.6144 -0.9261 -0.5157 33 1 4.6242 -2.4053 -0.5153 34 1 6.8610 -2.8307 0.9268 35 1 6.9380 -1.8099 3.5590 36 1 5.9482 -3.2894 3.5599 37 1 7.8223 -4.5447 2.5308 38 1 8.8126 -3.0657 2.5297 39 1 10.0812 -4.8319 5.5145 40 1 9.6705 -5.5715 3.9487 41 1 10.5357 -4.0166 3.9986 42 1 6.5029 -4.5164 4.7747 43 1 8.4323 -4.8112 6.9835 44 1 7.2601 -3.4796 6.8382 45 1 6.8045 -4.8200 9.1313 46 1 4.0755 -6.9015 12.0619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714466377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:17 Heat of formation + Delta-G solvation = -72.616961 kcal Electronic energy + Delta-G solvation = -28222.957565 eV Core-core repulsion = 23955.191623 eV Total energy + Delta-G solvation = -4267.765942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.33647 -40.95936 -40.36996 -38.46078 -37.30409 -36.14856 -35.79461 -34.70567 -33.79384 -32.84600 -31.91446 -29.87908 -28.30192 -28.11866 -25.71638 -24.64396 -23.78955 -23.43733 -21.96779 -21.35585 -21.14404 -20.30352 -18.96394 -18.34910 -17.96385 -17.68398 -17.39998 -17.11316 -16.87494 -16.65045 -16.26760 -15.79986 -15.60515 -15.43076 -15.05662 -14.97466 -14.74134 -14.44970 -14.35305 -14.01722 -13.95024 -13.62859 -13.53688 -13.41354 -13.39573 -13.16541 -13.01435 -12.92458 -12.57748 -12.44308 -12.26359 -12.18377 -12.08035 -11.98816 -11.76524 -11.54165 -11.30464 -10.56936 -10.46134 -10.27692 -10.24935 -9.33539 -8.43804 -6.04806 0.01536 1.13096 1.24328 1.27855 1.33354 1.41326 1.42308 1.92519 2.08065 2.20706 2.71625 2.74965 3.12433 3.32807 3.39197 3.58677 3.78690 3.80911 3.98070 4.07920 4.11288 4.14886 4.30041 4.37949 4.39174 4.47009 4.52570 4.53063 4.54627 4.59951 4.66749 4.69183 4.98608 5.00188 5.02275 5.05848 5.21066 5.30242 5.49356 5.51850 5.89261 6.08041 6.38387 6.39516 6.57114 6.85153 7.09922 7.15529 7.36722 7.93207 8.73902 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010597 B = 0.002076 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.532999 B =13483.947205 C =15426.087980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.170 3.830 3 N -0.331 5.331 4 N -0.310 5.310 5 C 0.176 3.824 6 C -0.037 4.037 7 C 0.511 3.489 8 O -0.591 6.591 9 N -0.701 5.701 10 C 0.114 3.886 11 C -0.118 4.118 12 C 0.082 3.918 13 H 0.055 0.945 14 C -0.136 4.136 15 N -0.684 5.684 16 C 0.061 3.939 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.055 0.945 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.230 1.230 28 O -0.230 6.230 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.427 0.573 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.341 0.659 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.390 0.610 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.526 14.106 -26.318 31.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 N -0.178 5.178 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.077 4.077 7 C 0.297 3.703 8 O -0.471 6.471 9 N -0.354 5.354 10 C -0.010 4.010 11 C -0.156 4.156 12 C -0.028 4.028 13 H 0.073 0.927 14 C -0.194 4.194 15 N -0.318 5.318 16 C -0.072 4.072 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.574 5.574 24 Si 0.785 3.215 25 H -0.184 1.184 26 H -0.198 1.198 27 H -0.154 1.154 28 O -0.110 6.110 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.197 0.803 33 H 0.189 0.811 34 H 0.266 0.734 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.161 0.839 43 H 0.132 0.868 44 H 0.089 0.911 45 H 0.225 0.775 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.265 14.549 -25.951 30.878 hybrid contribution -0.747 -0.330 1.164 1.422 sum 7.518 14.220 -24.786 29.548 Atomic orbital electron populations 1.20732 0.76645 1.07046 1.07253 1.29050 0.99502 0.78746 0.96746 1.74300 0.96401 1.27050 1.20003 1.74230 1.13022 1.10383 1.17924 1.27641 0.85868 0.91260 0.98865 1.20395 0.89335 1.02655 0.95348 1.20684 0.80729 0.77867 0.91005 1.90807 1.55183 1.53014 1.48120 1.45611 1.27180 1.52976 1.09632 1.21394 0.97207 0.99451 0.82947 1.21903 0.96269 1.00721 0.96660 1.21656 0.92620 0.94492 0.94003 0.92705 1.21785 0.94854 1.00745 1.02039 1.60261 1.09941 1.59534 1.02101 1.21682 0.98189 0.97361 0.89939 1.21041 0.87388 0.86074 0.82045 1.90538 1.50064 1.46310 1.63002 1.42044 1.33303 1.41280 1.06663 1.19008 1.12772 1.22283 0.91814 0.92726 1.26134 0.98742 0.98920 0.97652 1.69800 1.34509 1.40726 1.12389 0.85366 0.79530 0.78428 0.78217 1.18355 1.19764 1.15352 1.84778 1.17731 1.38764 1.69730 0.85463 0.87364 0.86545 0.80294 0.81052 0.73444 0.92195 0.94088 0.89604 0.86874 0.93353 0.92627 0.89848 0.83904 0.86752 0.91092 0.77495 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.17 3.57 8.48 88.34 0.75 4.32 16 3 N -0.33 -9.01 12.22 -165.49 -2.02 -11.03 16 4 N -0.31 -8.52 12.22 -165.50 -2.02 -10.54 16 5 C 0.18 3.82 6.97 88.34 0.62 4.43 16 6 C -0.04 -0.39 6.33 29.10 0.18 -0.20 16 7 C 0.51 9.70 7.82 87.66 0.69 10.39 16 8 O -0.59 -19.25 16.03 -3.03 -0.05 -19.29 16 9 N -0.70 -8.68 5.56 -463.06 -2.57 -11.26 16 10 C 0.11 2.02 5.50 86.38 0.48 2.49 16 11 C -0.12 -1.45 4.92 30.59 0.15 -1.30 16 12 C 0.08 1.47 2.65 44.91 0.12 1.58 16 13 H 0.05 0.92 7.80 -2.39 -0.02 0.90 16 14 C -0.14 -2.13 9.41 71.98 0.68 -1.45 16 15 N -0.68 -19.50 5.93 -495.59 -2.94 -22.44 16 16 C 0.06 1.90 5.96 85.55 0.51 2.41 16 17 C 0.45 20.77 7.82 87.66 0.69 21.46 16 18 O -0.61 -34.97 15.78 -3.09 -0.05 -35.02 16 19 N -0.59 -28.71 5.09 -306.99 -1.56 -30.27 16 20 C -0.33 -19.78 10.16 84.04 0.85 -18.93 16 21 H 0.05 3.90 7.39 -2.91 -0.02 3.87 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 23 N -0.93 -57.24 13.96 21.66 0.30 -56.94 16 24 Si 0.96 39.62 27.74 68.60 1.90 41.52 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 28 O -0.23 -5.14 10.87 -3.60 -0.04 -5.18 16 29 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.18 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.17 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.43 1.25 8.47 -92.71 -0.79 0.46 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.04 1.03 6.43 -2.39 -0.02 1.01 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 0.85 7.45 -2.38 -0.02 0.83 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.34 10.85 6.17 -89.69 -0.55 10.30 16 43 H 0.11 3.01 7.44 -2.39 -0.02 3.00 16 44 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 45 H 0.39 15.68 5.76 -92.71 -0.53 15.14 16 46 H 0.28 15.63 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -99.86 392.87 -3.02 -102.88 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -0.89 Total: 32.59 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 6.92 Total: 24.98 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -10.82 Total: -142.48 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: -0.14 Total: -59.49 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.90 Total: 41.52 kcal Total: -99.86 -3.02 -102.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714466377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.263 kcal (2) G-P(sol) polarization free energy of solvation -99.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds