Wall clock time and date at job start Tue Mar 31 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 C 1.53000 * 109.47268 * 119.99884 * 2 1 3 5 5 C 1.52994 * 109.47356 * 175.00333 * 4 2 1 6 6 H 1.09000 * 109.47017 * 54.99628 * 5 4 2 7 7 C 1.52997 * 109.47404 * 174.99986 * 5 4 2 8 8 N 1.46899 * 109.47254 * 174.99689 * 7 5 4 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.46800 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00338 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99855 * 180.02562 * 10 9 8 13 13 C 1.37091 * 120.00193 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00199 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99891 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00269 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99666 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46964 * 89.99975 * 17 15 13 19 19 H 1.48502 * 109.46799 * 209.99679 * 17 15 13 20 20 H 1.48495 * 109.47300 * 329.99842 * 17 15 13 21 21 N 1.46500 * 109.46849 * 295.00050 * 5 4 2 22 22 C 1.34779 * 120.00196 * 84.99779 * 21 5 4 23 23 O 1.21501 * 119.99867 * 0.02562 * 22 21 5 24 24 C 1.48280 * 120.00025 * 179.97438 * 22 21 5 25 25 C 1.47491 * 128.70993 * 179.69790 * 24 22 21 26 26 N 1.30650 * 102.71424 * 179.86079 * 25 24 22 27 27 O 1.20834 * 109.61897 * 0.42568 * 26 25 24 28 28 N 1.20902 * 115.90994 * 359.70239 * 27 26 25 29 29 H 1.09003 * 109.47377 * 300.00047 * 1 2 3 30 30 H 1.09005 * 109.47252 * 59.99825 * 1 2 3 31 31 H 1.08996 * 109.46698 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46933 * 240.00251 * 2 1 3 33 33 H 1.08993 * 109.47222 * 59.99801 * 3 2 1 34 34 H 1.08997 * 109.47141 * 180.02562 * 3 2 1 35 35 H 1.09009 * 109.47128 * 299.99670 * 3 2 1 36 36 H 1.08996 * 109.46705 * 54.99807 * 4 2 1 37 37 H 1.09004 * 109.46936 * 295.00284 * 4 2 1 38 38 H 1.09002 * 109.47153 * 54.99686 * 7 5 4 39 39 H 1.09001 * 109.46832 * 294.99876 * 7 5 4 40 40 H 1.00902 * 111.00582 * 303.95797 * 8 7 5 41 41 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 42 42 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 43 43 H 0.97000 * 119.99567 * 0.02562 * 12 10 9 44 44 H 0.96998 * 120.00361 * 179.97438 * 16 15 13 45 45 H 0.96998 * 120.00051 * 264.99732 * 21 5 4 46 46 H 1.07993 * 128.64175 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 1 3.9953 0.1613 1.0527 7 6 4.0852 -1.4393 2.4919 8 7 5.5344 -1.6555 2.3872 9 6 6.0702 -2.2394 3.6242 10 6 7.5560 -2.4457 3.4797 11 8 8.1138 -2.1363 2.4480 12 7 8.2651 -2.9740 4.4969 13 6 9.6168 -3.1612 4.3657 14 1 10.1134 -2.8857 3.4471 15 6 10.3477 -3.7064 5.4142 16 7 9.7433 -4.0421 6.5317 17 14 12.1894 -3.9621 5.2351 18 1 12.9052 -2.7457 5.6966 19 1 12.6098 -5.1255 6.0568 20 1 12.5173 -4.2186 3.8096 21 7 3.9480 -1.6871 0.0627 22 6 4.0651 -1.1629 -1.1735 23 8 3.8535 0.0197 -1.3545 24 6 4.4535 -2.0294 -2.3124 25 6 4.6307 -1.6645 -3.7304 26 7 4.9733 -2.7998 -4.2788 27 8 4.9986 -3.6659 -3.4366 28 7 4.7206 -3.3180 -2.3126 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8901 36 1 1.6054 -1.7197 1.2951 37 1 1.7516 -0.1583 2.1370 38 1 3.5877 -2.3922 2.6722 39 1 3.8780 -0.7592 3.3181 40 1 5.7575 -2.2310 1.5891 41 1 5.8768 -1.5646 4.4580 42 1 5.5865 -3.1979 3.8126 43 1 7.8189 -3.2218 5.3217 44 1 10.2534 -4.4230 7.2635 45 1 4.1173 -2.6312 0.2072 46 1 4.5096 -0.6989 -4.1985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714935763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:33 Heat of formation + Delta-G solvation = 39.661903 kcal Electronic energy + Delta-G solvation = -29563.496509 eV Core-core repulsion = 25300.599343 eV Total energy + Delta-G solvation = -4262.897165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.18919 -40.54648 -38.36723 -37.33154 -35.66025 -35.07677 -34.73555 -34.10953 -33.62554 -31.26898 -30.51147 -27.43852 -27.19328 -26.39021 -25.07731 -24.36686 -23.45868 -21.95050 -20.85802 -20.17875 -19.36277 -19.30148 -18.76013 -18.01817 -17.81699 -16.63946 -16.27422 -16.09864 -15.43516 -15.25633 -14.66549 -14.62605 -14.47667 -14.34003 -14.09405 -13.72468 -13.55098 -13.27780 -13.16984 -12.59149 -12.47293 -12.37649 -12.19899 -11.99793 -11.87771 -11.81134 -11.63648 -11.53358 -11.46500 -11.09536 -11.05468 -10.99359 -10.71016 -10.58017 -10.46563 -10.41047 -10.24123 -9.53548 -9.36394 -8.52696 -8.16001 -7.99100 -6.44276 -3.85104 0.47579 1.04158 2.34564 2.68931 3.12375 3.16439 3.20330 3.25299 3.31140 3.64156 3.86731 3.94798 4.20918 4.46160 4.52200 4.62017 4.75325 4.77294 4.96011 4.99377 5.03995 5.12392 5.21819 5.31135 5.37339 5.48420 5.54054 5.56650 5.63493 5.71070 5.76862 5.83802 5.87714 5.90483 6.06152 6.17560 6.21214 6.26155 6.41460 7.02734 7.06134 7.50033 7.53016 7.70350 8.03374 8.11827 8.58213 9.15332 9.51102 10.02394 10.73419 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.002612 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.872396 B =10717.867355 C =12627.888384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.126 4.126 5 C 0.146 3.854 6 H 0.108 0.892 7 C 0.049 3.951 8 N -0.667 5.667 9 C 0.050 3.950 10 C 0.439 3.561 11 O -0.583 6.583 12 N -0.562 5.562 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 N -0.700 5.700 22 C 0.609 3.391 23 O -0.501 6.501 24 C -0.041 4.041 25 C 0.037 3.963 26 N -0.354 5.354 27 O 0.343 5.657 28 N -0.318 5.318 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.091 0.909 40 H 0.347 0.653 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.405 0.595 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.501 4.428 -12.809 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.198 4.198 4 C -0.165 4.165 5 C 0.042 3.958 6 H 0.126 0.874 7 C -0.081 4.081 8 N -0.300 5.300 9 C -0.083 4.083 10 C 0.225 3.775 11 O -0.467 6.467 12 N -0.199 5.199 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.352 5.352 22 C 0.391 3.609 23 O -0.374 6.374 24 C -0.207 4.207 25 C -0.149 4.149 26 N -0.078 5.078 27 O 0.116 5.884 28 N -0.038 5.038 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.109 0.891 40 H 0.167 0.833 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.240 0.760 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -18.754 4.928 -13.446 23.596 hybrid contribution 0.208 -0.832 0.761 1.147 sum -18.546 4.096 -12.686 22.839 Atomic orbital electron populations 1.21864 0.95880 1.01150 1.01558 1.21145 0.94739 0.97328 0.97998 1.21863 1.02855 0.94784 1.00331 1.22090 0.94121 1.01133 0.99189 1.21358 0.94466 0.96057 0.83915 0.87417 1.22308 0.88939 1.00017 0.96841 1.60025 1.10029 1.54768 1.05194 1.21694 0.95174 0.98157 0.93226 1.19780 0.87940 0.84268 0.85561 1.90532 1.71431 1.55337 1.29399 1.41856 1.08490 1.54818 1.14744 1.19700 0.82768 1.38639 1.01810 0.87937 1.25262 1.00653 0.97024 0.94949 1.69605 1.37006 1.43042 1.04641 0.85860 0.82107 0.77858 0.78491 1.20354 1.20901 1.19409 1.45839 1.68788 1.13504 1.07020 1.16373 0.77613 0.85924 0.80979 1.90855 1.49097 1.13922 1.83517 1.26328 1.06639 0.90553 0.97197 1.27732 0.98352 0.99597 0.89190 1.75077 1.16614 0.99137 1.16929 1.85100 1.60551 1.33810 1.08927 1.75408 1.11072 1.13922 1.03420 0.92839 0.92942 0.93244 0.91068 0.93836 0.90625 0.93429 0.91674 0.90365 0.94774 0.89050 0.83294 0.89365 0.93757 0.77458 0.91840 0.76007 0.75662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.09 -0.84 2.38 -90.62 -0.22 -1.05 16 3 C -0.14 -1.37 8.03 37.16 0.30 -1.07 16 4 C -0.13 -1.02 4.36 -26.73 -0.12 -1.14 16 5 C 0.15 1.43 2.47 -67.94 -0.17 1.26 16 6 H 0.11 1.26 5.92 -51.93 -0.31 0.95 16 7 C 0.05 0.51 5.30 -3.83 -0.02 0.49 16 8 N -0.67 -10.03 6.12 -115.06 -0.70 -10.74 16 9 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 10 C 0.44 10.21 7.82 -10.99 -0.09 10.13 16 11 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 12 N -0.56 -14.10 5.29 -10.97 -0.06 -14.16 16 13 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 14 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 17 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 N -0.70 -7.04 4.30 -54.62 -0.24 -7.27 16 22 C 0.61 6.73 6.40 -12.13 -0.08 6.65 16 23 O -0.50 -6.17 12.00 5.36 0.06 -6.10 16 24 C -0.04 -0.43 7.56 -80.07 -0.61 -1.04 16 25 C 0.04 0.32 12.63 -14.29 -0.18 0.14 16 26 N -0.35 -3.52 12.22 30.71 0.38 -3.14 16 27 O 0.34 3.57 11.65 27.27 0.32 3.89 16 28 N -0.32 -3.45 12.13 33.49 0.41 -3.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.74 5.19 -51.93 -0.27 0.47 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.86 4.75 -51.93 -0.25 0.61 16 35 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.35 5.49 7.28 -39.29 -0.29 5.20 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.40 3.82 8.01 -40.82 -0.33 3.50 16 46 H 0.23 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -31.93 383.05 -5.72 -37.65 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -6.34 Total: 14.05 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -1.10 Total: 6.41 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.51 Total: -62.01 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.47 Total: -17.89 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.93 -5.72 -37.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714935763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.311 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds