Wall clock time and date at job start Tue Mar 31 2020 22:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 C 1.53000 * 109.47268 * 119.99884 * 2 1 3 5 5 C 1.52994 * 109.47356 * 175.00333 * 4 2 1 6 6 H 1.09000 * 109.47017 * 54.99628 * 5 4 2 7 7 C 1.52997 * 109.47404 * 174.99986 * 5 4 2 8 8 N 1.46899 * 109.47254 * 174.99689 * 7 5 4 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.46800 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00338 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99855 * 180.02562 * 10 9 8 13 13 C 1.37091 * 120.00193 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00199 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99891 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00269 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99666 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46964 * 89.99975 * 17 15 13 19 19 H 1.48502 * 109.46799 * 209.99679 * 17 15 13 20 20 H 1.48495 * 109.47300 * 329.99842 * 17 15 13 21 21 N 1.46500 * 109.46849 * 295.00050 * 5 4 2 22 22 C 1.34779 * 120.00196 * 84.99779 * 21 5 4 23 23 O 1.21501 * 119.99867 * 0.02562 * 22 21 5 24 24 C 1.48280 * 120.00025 * 179.97438 * 22 21 5 25 25 C 1.47491 * 128.70993 * 179.69790 * 24 22 21 26 26 N 1.30650 * 102.71424 * 179.86079 * 25 24 22 27 27 O 1.20834 * 109.61897 * 0.42568 * 26 25 24 28 28 N 1.20902 * 115.90994 * 359.70239 * 27 26 25 29 29 H 1.09003 * 109.47377 * 300.00047 * 1 2 3 30 30 H 1.09005 * 109.47252 * 59.99825 * 1 2 3 31 31 H 1.08996 * 109.46698 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46933 * 240.00251 * 2 1 3 33 33 H 1.08993 * 109.47222 * 59.99801 * 3 2 1 34 34 H 1.08997 * 109.47141 * 180.02562 * 3 2 1 35 35 H 1.09009 * 109.47128 * 299.99670 * 3 2 1 36 36 H 1.08996 * 109.46705 * 54.99807 * 4 2 1 37 37 H 1.09004 * 109.46936 * 295.00284 * 4 2 1 38 38 H 1.09002 * 109.47153 * 54.99686 * 7 5 4 39 39 H 1.09001 * 109.46832 * 294.99876 * 7 5 4 40 40 H 1.00902 * 111.00582 * 303.95797 * 8 7 5 41 41 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 42 42 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 43 43 H 0.97000 * 119.99567 * 0.02562 * 12 10 9 44 44 H 0.96998 * 120.00361 * 179.97438 * 16 15 13 45 45 H 0.96998 * 120.00051 * 264.99732 * 21 5 4 46 46 H 1.07993 * 128.64175 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 1 3.9953 0.1613 1.0527 7 6 4.0852 -1.4393 2.4919 8 7 5.5344 -1.6555 2.3872 9 6 6.0702 -2.2394 3.6242 10 6 7.5560 -2.4457 3.4797 11 8 8.1138 -2.1363 2.4480 12 7 8.2651 -2.9740 4.4969 13 6 9.6168 -3.1612 4.3657 14 1 10.1134 -2.8857 3.4471 15 6 10.3477 -3.7064 5.4142 16 7 9.7433 -4.0421 6.5317 17 14 12.1894 -3.9621 5.2351 18 1 12.9052 -2.7457 5.6966 19 1 12.6098 -5.1255 6.0568 20 1 12.5173 -4.2186 3.8096 21 7 3.9480 -1.6871 0.0627 22 6 4.0651 -1.1629 -1.1735 23 8 3.8535 0.0197 -1.3545 24 6 4.4535 -2.0294 -2.3124 25 6 4.6307 -1.6645 -3.7304 26 7 4.9733 -2.7998 -4.2788 27 8 4.9986 -3.6659 -3.4366 28 7 4.7206 -3.3180 -2.3126 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8901 36 1 1.6054 -1.7197 1.2951 37 1 1.7516 -0.1583 2.1370 38 1 3.5877 -2.3922 2.6722 39 1 3.8780 -0.7592 3.3181 40 1 5.7575 -2.2310 1.5891 41 1 5.8768 -1.5646 4.4580 42 1 5.5865 -3.1979 3.8126 43 1 7.8189 -3.2218 5.3217 44 1 10.2534 -4.4230 7.2635 45 1 4.1173 -2.6312 0.2072 46 1 4.5096 -0.6989 -4.1985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714935763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:32 Heat of formation + Delta-G solvation = 15.281083 kcal Electronic energy + Delta-G solvation = -29564.553740 eV Core-core repulsion = 25300.599343 eV Total energy + Delta-G solvation = -4263.954397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.96965 -41.38511 -40.14015 -38.25978 -36.63863 -35.98509 -35.81498 -35.51922 -34.75033 -33.26989 -31.43462 -28.69946 -27.94218 -27.17311 -26.62420 -25.17242 -24.73966 -22.78969 -21.67906 -21.12009 -20.89119 -20.09370 -19.95151 -19.56354 -18.74825 -17.81431 -17.44370 -16.98912 -16.89291 -16.40777 -16.01570 -15.95414 -15.46454 -15.39385 -15.12519 -15.02855 -14.75428 -14.40572 -13.99418 -13.90772 -13.50308 -13.32567 -13.16115 -13.02499 -13.00010 -12.96390 -12.85525 -12.58081 -12.45655 -12.42922 -12.37368 -12.13593 -11.87568 -11.75038 -11.51961 -11.42482 -11.31738 -11.29703 -10.38390 -10.14535 -10.02364 -9.35052 -8.47911 -5.96359 -0.34729 0.30807 1.36820 1.40901 1.53181 1.54164 1.85202 2.04763 2.27833 2.34945 2.44819 2.82116 2.93069 3.19689 3.46152 3.69259 3.73590 3.80176 4.04563 4.06284 4.23522 4.25636 4.34771 4.42234 4.47061 4.55286 4.62507 4.70858 4.74816 4.87205 4.88229 4.91106 5.07144 5.15340 5.16520 5.37222 5.39924 5.42890 5.55752 5.64191 5.84753 6.07082 6.21003 6.32429 6.59362 6.87666 7.11990 7.32937 7.55688 8.11373 8.69426 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.002612 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.872396 B =10717.867355 C =12627.888384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.119 4.119 5 C 0.150 3.850 6 H 0.087 0.913 7 C 0.053 3.947 8 N -0.685 5.685 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.626 6.626 12 N -0.572 5.572 13 C -0.334 4.334 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.990 3.010 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.274 1.274 21 N -0.696 5.696 22 C 0.607 3.393 23 O -0.517 6.517 24 C -0.053 4.053 25 C 0.051 3.949 26 N -0.364 5.364 27 O 0.336 5.664 28 N -0.326 5.326 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.340 0.660 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.408 0.592 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.799 4.364 -12.112 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.194 4.194 4 C -0.157 4.157 5 C 0.047 3.953 6 H 0.105 0.895 7 C -0.076 4.076 8 N -0.318 5.318 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.209 5.209 13 C -0.464 4.464 14 H 0.094 0.906 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.814 3.186 18 H -0.197 1.197 19 H -0.194 1.194 20 H -0.199 1.199 21 N -0.348 5.348 22 C 0.389 3.611 23 O -0.391 6.391 24 C -0.219 4.219 25 C -0.135 4.135 26 N -0.089 5.089 27 O 0.112 5.888 28 N -0.046 5.046 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.159 0.841 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.244 0.756 46 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -20.085 4.843 -12.710 24.257 hybrid contribution 0.571 -0.763 0.499 1.076 sum -19.514 4.079 -12.211 23.378 Atomic orbital electron populations 1.21822 0.94736 1.01619 1.01892 1.21107 0.95624 0.96600 0.97810 1.21803 1.01544 0.95554 1.00501 1.22037 0.92452 1.01910 0.99321 1.21314 0.95614 0.94898 0.83500 0.89451 1.22406 0.86177 1.01490 0.97550 1.60007 1.13086 1.54575 1.04140 1.21558 0.90190 1.00252 0.94712 1.20965 0.90608 0.82008 0.84135 1.90501 1.73214 1.56578 1.30957 1.41921 1.07906 1.55594 1.15526 1.19631 0.84472 1.40683 1.01577 0.90566 1.26000 1.04587 0.96147 0.94377 1.69656 1.38471 1.42892 1.04970 0.84969 0.77116 0.78289 0.78228 1.19684 1.19401 1.19911 1.45855 1.68357 1.13689 1.06879 1.16464 0.77456 0.85807 0.81352 1.90851 1.49943 1.14515 1.83806 1.26409 1.07101 0.90515 0.97847 1.28232 0.96626 1.00258 0.88380 1.75081 1.17374 0.99494 1.16989 1.85094 1.60829 1.34083 1.08844 1.75379 1.11211 1.14292 1.03746 0.91987 0.93165 0.92692 0.92619 0.92861 0.92548 0.94016 0.90525 0.88870 0.92496 0.87616 0.84116 0.87299 0.91060 0.76878 0.91256 0.75635 0.72810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 71.98 0.66 -1.28 16 2 C -0.09 -1.53 2.38 -10.79 -0.03 -1.56 16 3 C -0.14 -2.55 8.03 71.98 0.58 -1.97 16 4 C -0.12 -1.64 4.36 30.59 0.13 -1.51 16 5 C 0.15 2.73 2.47 44.99 0.11 2.84 16 6 H 0.09 2.00 5.92 -2.39 -0.01 1.99 16 7 C 0.05 0.97 5.30 86.30 0.46 1.43 16 8 N -0.69 -19.65 6.12 -517.93 -3.17 -22.82 16 9 C 0.07 2.06 6.17 85.55 0.53 2.59 16 10 C 0.44 20.30 7.82 87.65 0.69 20.98 16 11 O -0.63 -34.62 15.78 -3.06 -0.05 -34.67 16 12 N -0.57 -28.95 5.29 -306.99 -1.62 -30.57 16 13 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 14 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 15 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 16 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 17 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 N -0.70 -13.51 4.30 -445.00 -1.92 -15.42 16 22 C 0.61 13.28 6.40 86.91 0.56 13.84 16 23 O -0.52 -12.74 12.00 -3.72 -0.04 -12.78 16 24 C -0.05 -1.09 7.56 44.29 0.34 -0.76 16 25 C 0.05 0.85 12.63 87.31 1.10 1.95 16 26 N -0.36 -7.07 12.22 -61.42 -0.75 -7.82 16 27 O 0.34 7.00 11.65 140.86 1.64 8.64 16 28 N -0.33 -7.06 12.13 -52.05 -0.63 -7.69 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.11 5.19 -2.39 -0.01 1.09 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.28 4.75 -2.39 -0.01 1.27 16 35 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.34 10.55 7.28 -89.69 -0.65 9.90 16 41 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 44 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.41 7.39 8.01 -92.71 -0.74 6.64 16 46 H 0.26 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -69.99 383.05 1.10 -68.89 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -1.07 Total: 39.87 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 6.40 Total: 18.29 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -7.80 Total: -133.21 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: 1.55 Total: -38.81 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -69.99 1.10 -68.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714935763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.170 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds