Wall clock time and date at job start Tue Mar 31 2020 22:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46796 * 2 1 4 4 N 1.46497 * 109.46925 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99957 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99961 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00086 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00076 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47008 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47312 * 119.99991 * 9 7 5 12 12 H 1.48506 * 109.46921 * 239.99890 * 9 7 5 13 13 N 1.46503 * 109.47314 * 119.99592 * 2 1 3 14 14 C 1.34778 * 119.99984 * 304.32340 * 13 2 1 15 15 O 1.21604 * 119.99933 * 354.96516 * 14 13 2 16 16 C 1.47438 * 120.00268 * 174.96047 * 14 13 2 17 17 C 1.38956 * 121.16922 * 0.22292 * 16 14 13 18 18 N 1.32195 * 121.31643 * 180.28834 * 17 16 14 19 19 C 1.31193 * 123.69818 * 359.73199 * 18 17 16 20 20 C 1.40383 * 120.91639 * 0.02562 * 19 18 17 21 21 C 1.40390 * 122.14644 * 179.97438 * 20 19 18 22 22 C 1.36230 * 119.48738 * 180.02562 * 21 20 19 23 23 C 1.39294 * 121.10821 * 0.03760 * 22 21 20 24 24 C 1.36443 * 120.94195 * 0.02562 * 23 22 21 25 25 C 1.39684 * 119.43773 * 359.97438 * 24 23 22 26 26 C 1.53000 * 109.47539 * 239.99804 * 2 1 3 27 27 C 1.53000 * 117.49857 * 12.84751 * 26 2 1 28 28 C 1.52993 * 117.49693 * 304.18602 * 26 2 1 29 29 H 1.08993 * 109.47396 * 299.99978 * 1 2 3 30 30 H 1.09004 * 109.46903 * 60.00266 * 1 2 3 31 31 H 1.09001 * 109.46758 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46945 * 299.99541 * 3 2 1 33 33 H 1.08993 * 109.47130 * 59.99859 * 3 2 1 34 34 H 0.97004 * 120.00459 * 359.97438 * 4 3 2 35 35 H 0.97005 * 119.99848 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99955 * 124.31811 * 13 2 1 37 37 H 1.08003 * 119.34296 * 0.02800 * 17 16 14 38 38 H 1.08003 * 119.54300 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.25718 * 0.04508 * 21 20 19 40 40 H 1.07999 * 119.44593 * 180.02562 * 22 21 20 41 41 H 1.07991 * 119.52770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.27462 * 179.97438 * 24 23 22 43 43 H 1.09000 * 115.55063 * 158.51384 * 26 2 1 44 44 H 1.09009 * 117.49736 * 359.97438 * 27 26 2 45 45 H 1.08999 * 117.50169 * 145.02148 * 27 26 2 46 46 H 1.09003 * 117.49763 * 214.97633 * 28 26 2 47 47 H 1.09000 * 117.50198 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1896 2.6286 0.0013 6 1 3.6495 3.5638 0.0009 7 6 5.5776 2.6286 0.0024 8 7 6.2358 1.4888 0.0033 9 14 6.5116 4.2464 0.0025 10 1 5.5465 5.3751 0.0007 11 1 7.3644 4.3256 1.2157 12 1 7.3664 4.3246 -1.2094 13 7 2.0184 -0.6905 1.1962 14 6 1.6225 -0.2830 2.4184 15 8 0.9342 0.7128 2.5339 16 6 2.0239 -1.0445 3.6154 17 6 2.8137 -2.1832 3.5120 18 7 3.1706 -2.8714 4.5827 19 6 2.8245 -2.5463 5.8057 20 6 2.0310 -1.4151 6.0542 21 6 1.6452 -1.0438 7.3519 22 6 0.8737 0.0647 7.5308 23 6 0.4600 0.8361 6.4472 24 6 0.8157 0.5033 5.1727 25 6 1.6063 -0.6272 4.9535 26 6 2.0401 -0.7213 -1.2492 27 6 1.0282 -1.0136 -2.3589 28 6 1.5567 -2.1536 -1.4847 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.9900 0.6026 0.0013 35 1 7.2059 1.4889 0.0037 36 1 2.6266 -1.4411 1.1086 37 1 3.1390 -2.5149 2.5370 38 1 3.1546 -3.1573 6.6328 39 1 1.9579 -1.6321 8.2019 40 1 0.5776 0.3500 8.5294 41 1 -0.1515 1.7095 6.6183 42 1 0.4885 1.1089 4.3404 43 1 3.0596 -0.4784 -1.5489 44 1 -0.0011 -0.6923 -2.1988 45 1 1.3819 -0.9634 -3.3887 46 1 2.2580 -2.8530 -1.9398 47 1 0.8756 -2.5823 -0.7496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715128198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:48 Heat of formation + Delta-G solvation = 69.390540 kcal Electronic energy + Delta-G solvation = -29726.557645 eV Core-core repulsion = 25875.798874 eV Total energy + Delta-G solvation = -3850.758772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94623 -39.81527 -37.73429 -37.39321 -34.69023 -33.56990 -32.83281 -31.31450 -31.20106 -30.02069 -29.09585 -25.93402 -25.02647 -23.64649 -23.51658 -22.67228 -22.32615 -22.05519 -20.44375 -18.95802 -18.01504 -17.56958 -17.36001 -17.13435 -16.16239 -15.52927 -15.27964 -15.00116 -14.86054 -14.59976 -14.45627 -13.96503 -13.86654 -13.72682 -13.35587 -13.19034 -12.80916 -12.72019 -12.34587 -12.22792 -12.09584 -11.97124 -11.94010 -11.44327 -11.40414 -11.04961 -10.82220 -10.79994 -10.74257 -10.19463 -10.06636 -10.04331 -9.86081 -9.80155 -9.65105 -9.15901 -9.13400 -8.76431 -8.67605 -8.13850 -6.82474 -5.72023 -2.98155 0.03890 0.83066 1.64828 2.85066 3.20950 3.35311 3.46230 3.52329 3.54276 4.04527 4.09281 4.20656 4.46100 4.61586 4.63237 4.64181 4.78132 4.79334 4.97487 5.08173 5.11080 5.17543 5.18172 5.34935 5.42726 5.44552 5.54376 5.64055 5.69217 5.71105 5.78574 5.89778 5.96507 6.00528 6.06174 6.20512 6.24831 6.26954 6.29815 6.40177 6.44922 6.51503 6.56478 6.68264 6.79827 6.91147 7.09979 7.76485 7.80434 7.83762 8.47497 8.50364 9.59036 10.16938 10.52456 11.51264 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008685 B = 0.004162 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.206475 B = 6726.233944 C = 8262.845871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.202 3.798 3 C 0.145 3.855 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.700 5.700 14 C 0.575 3.425 15 O -0.528 6.528 16 C -0.162 4.162 17 C 0.120 3.880 18 N -0.495 5.495 19 C 0.168 3.832 20 C -0.121 4.121 21 C -0.093 4.093 22 C -0.120 4.120 23 C -0.103 4.103 24 C -0.105 4.105 25 C 0.012 3.988 26 C -0.151 4.151 27 C -0.171 4.171 28 C -0.183 4.183 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.397 0.603 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.167 0.833 43 H 0.123 0.877 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.323 -10.549 9.620 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.117 3.883 3 C 0.017 3.983 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.350 5.350 14 C 0.362 3.638 15 O -0.406 6.406 16 C -0.167 4.167 17 C -0.025 4.025 18 N -0.202 5.202 19 C -0.003 4.003 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.138 4.138 23 C -0.122 4.122 24 C -0.122 4.122 25 C 0.007 3.993 26 C -0.170 4.170 27 C -0.208 4.208 28 C -0.220 4.220 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.215 0.785 35 H 0.062 0.938 36 H 0.233 0.767 37 H 0.175 0.825 38 H 0.181 0.819 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.184 0.816 43 H 0.141 0.859 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.290 -10.362 9.367 19.281 hybrid contribution 0.840 0.985 0.088 1.297 sum -12.451 -9.377 9.455 18.231 Atomic orbital electron populations 1.22288 0.94535 1.01707 1.03722 1.20076 0.93172 0.93202 0.81818 1.21067 0.86486 0.91534 0.99259 1.42241 0.99181 1.06192 1.89424 1.19272 0.89011 0.86218 1.41599 0.91305 1.24672 0.96309 0.96663 1.03457 1.69654 1.06576 1.23741 1.58550 0.86152 0.79939 0.83289 0.77083 1.20616 1.22032 1.21975 1.45834 1.48793 1.35340 1.05034 1.17599 0.79991 0.83787 0.82460 1.90559 1.39338 1.25206 1.85547 1.22014 1.02768 0.98337 0.93601 1.22755 0.92041 0.90209 0.97454 1.67082 1.22016 1.32021 0.99069 1.23239 0.90465 0.92197 0.94427 1.19007 1.01368 0.97761 0.94205 1.20915 0.97849 0.97353 0.95154 1.20965 0.98203 0.95323 0.99268 1.21169 0.99064 0.99428 0.92554 1.21863 0.95607 0.95738 0.99005 1.18919 0.95224 0.94506 0.90663 1.22571 1.00846 0.97054 0.96504 1.23057 0.99242 1.02681 0.95858 1.22964 1.04029 0.91525 1.03527 0.90099 0.91424 0.92925 0.95789 0.93696 0.78466 0.93754 0.76744 0.82497 0.81882 0.84944 0.85701 0.85489 0.81556 0.85895 0.88256 0.88845 0.88860 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 6.98 37.16 0.26 -2.08 16 2 C 0.20 3.29 0.54 -131.81 -0.07 3.22 16 3 C 0.14 3.05 5.03 -4.04 -0.02 3.03 16 4 N -0.73 -18.36 5.04 -59.91 -0.30 -18.66 16 5 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 6 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 8 N -0.94 -28.37 13.06 55.49 0.72 -27.65 16 9 Si 0.90 23.03 29.55 -169.99 -5.02 18.00 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 N -0.70 -11.06 4.68 -48.66 -0.23 -11.29 16 14 C 0.57 9.85 7.18 -12.51 -0.09 9.76 16 15 O -0.53 -10.04 9.97 5.27 0.05 -9.98 16 16 C -0.16 -2.55 6.07 -102.66 -0.62 -3.17 16 17 C 0.12 1.71 10.71 -17.13 -0.18 1.52 16 18 N -0.49 -6.82 10.22 -12.58 -0.13 -6.95 16 19 C 0.17 1.96 11.00 -17.02 -0.19 1.77 16 20 C -0.12 -1.52 5.74 -106.89 -0.61 -2.13 16 21 C -0.09 -0.91 9.82 -39.49 -0.39 -1.30 16 22 C -0.12 -1.16 9.94 -39.91 -0.40 -1.55 16 23 C -0.10 -1.18 9.96 -39.84 -0.40 -1.57 16 24 C -0.10 -1.52 9.32 -39.69 -0.37 -1.89 16 25 C 0.01 0.18 5.90 -104.75 -0.62 -0.43 16 26 C -0.15 -2.26 4.84 -90.62 -0.44 -2.70 16 27 C -0.17 -2.10 9.64 -26.69 -0.26 -2.36 16 28 C -0.18 -2.16 9.82 -26.70 -0.26 -2.42 16 29 H 0.08 1.28 6.03 -51.93 -0.31 0.97 16 30 H 0.07 0.88 6.78 -51.93 -0.35 0.53 16 31 H 0.05 0.66 6.98 -51.93 -0.36 0.30 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 1.05 6.32 -51.93 -0.33 0.72 16 34 H 0.38 9.90 6.62 -40.82 -0.27 9.63 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.40 5.63 6.60 -40.82 -0.27 5.36 16 37 H 0.16 1.92 6.45 -52.48 -0.34 1.59 16 38 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.17 2.69 5.24 -52.49 -0.28 2.41 16 43 H 0.12 2.22 7.09 -51.93 -0.37 1.85 16 44 H 0.10 1.13 5.88 -51.92 -0.31 0.82 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.09 1.01 7.34 -51.93 -0.38 0.63 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -33.70 375.95 -10.21 -43.91 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -6.07 Total: 16.50 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -4.90 Total: -9.55 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: 0.07 Total: -64.54 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.05 Total: -9.98 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.70 -10.21 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715128198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.302 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds