Wall clock time and date at job start Tue Mar 31 2020 22:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46796 * 2 1 4 4 N 1.46497 * 109.46925 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99957 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99961 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00086 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00076 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47008 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47312 * 119.99991 * 9 7 5 12 12 H 1.48506 * 109.46921 * 239.99890 * 9 7 5 13 13 N 1.46503 * 109.47314 * 119.99592 * 2 1 3 14 14 C 1.34778 * 119.99984 * 304.32340 * 13 2 1 15 15 O 1.21604 * 119.99933 * 354.96516 * 14 13 2 16 16 C 1.47438 * 120.00268 * 174.96047 * 14 13 2 17 17 C 1.38956 * 121.16922 * 0.22292 * 16 14 13 18 18 N 1.32195 * 121.31643 * 180.28834 * 17 16 14 19 19 C 1.31193 * 123.69818 * 359.73199 * 18 17 16 20 20 C 1.40383 * 120.91639 * 0.02562 * 19 18 17 21 21 C 1.40390 * 122.14644 * 179.97438 * 20 19 18 22 22 C 1.36230 * 119.48738 * 180.02562 * 21 20 19 23 23 C 1.39294 * 121.10821 * 0.03760 * 22 21 20 24 24 C 1.36443 * 120.94195 * 0.02562 * 23 22 21 25 25 C 1.39684 * 119.43773 * 359.97438 * 24 23 22 26 26 C 1.53000 * 109.47539 * 239.99804 * 2 1 3 27 27 C 1.53000 * 117.49857 * 12.84751 * 26 2 1 28 28 C 1.52993 * 117.49693 * 304.18602 * 26 2 1 29 29 H 1.08993 * 109.47396 * 299.99978 * 1 2 3 30 30 H 1.09004 * 109.46903 * 60.00266 * 1 2 3 31 31 H 1.09001 * 109.46758 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46945 * 299.99541 * 3 2 1 33 33 H 1.08993 * 109.47130 * 59.99859 * 3 2 1 34 34 H 0.97004 * 120.00459 * 359.97438 * 4 3 2 35 35 H 0.97005 * 119.99848 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99955 * 124.31811 * 13 2 1 37 37 H 1.08003 * 119.34296 * 0.02800 * 17 16 14 38 38 H 1.08003 * 119.54300 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.25718 * 0.04508 * 21 20 19 40 40 H 1.07999 * 119.44593 * 180.02562 * 22 21 20 41 41 H 1.07991 * 119.52770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.27462 * 179.97438 * 24 23 22 43 43 H 1.09000 * 115.55063 * 158.51384 * 26 2 1 44 44 H 1.09009 * 117.49736 * 359.97438 * 27 26 2 45 45 H 1.08999 * 117.50169 * 145.02148 * 27 26 2 46 46 H 1.09003 * 117.49763 * 214.97633 * 28 26 2 47 47 H 1.09000 * 117.50198 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1896 2.6286 0.0013 6 1 3.6495 3.5638 0.0009 7 6 5.5776 2.6286 0.0024 8 7 6.2358 1.4888 0.0033 9 14 6.5116 4.2464 0.0025 10 1 5.5465 5.3751 0.0007 11 1 7.3644 4.3256 1.2157 12 1 7.3664 4.3246 -1.2094 13 7 2.0184 -0.6905 1.1962 14 6 1.6225 -0.2830 2.4184 15 8 0.9342 0.7128 2.5339 16 6 2.0239 -1.0445 3.6154 17 6 2.8137 -2.1832 3.5120 18 7 3.1706 -2.8714 4.5827 19 6 2.8245 -2.5463 5.8057 20 6 2.0310 -1.4151 6.0542 21 6 1.6452 -1.0438 7.3519 22 6 0.8737 0.0647 7.5308 23 6 0.4600 0.8361 6.4472 24 6 0.8157 0.5033 5.1727 25 6 1.6063 -0.6272 4.9535 26 6 2.0401 -0.7213 -1.2492 27 6 1.0282 -1.0136 -2.3589 28 6 1.5567 -2.1536 -1.4847 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.9900 0.6026 0.0013 35 1 7.2059 1.4889 0.0037 36 1 2.6266 -1.4411 1.1086 37 1 3.1390 -2.5149 2.5370 38 1 3.1546 -3.1573 6.6328 39 1 1.9579 -1.6321 8.2019 40 1 0.5776 0.3500 8.5294 41 1 -0.1515 1.7095 6.6183 42 1 0.4885 1.1089 4.3404 43 1 3.0596 -0.4784 -1.5489 44 1 -0.0011 -0.6923 -2.1988 45 1 1.3819 -0.9634 -3.3887 46 1 2.2580 -2.8530 -1.9398 47 1 0.8756 -2.5823 -0.7496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715128198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:48 Heat of formation + Delta-G solvation = 48.071003 kcal Electronic energy + Delta-G solvation = -29727.482130 eV Core-core repulsion = 25875.798874 eV Total energy + Delta-G solvation = -3851.683256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01737 -40.99167 -38.94490 -38.33168 -36.39800 -35.09829 -33.95124 -32.98916 -32.15571 -31.48268 -30.20678 -27.62651 -26.19910 -25.03209 -24.49282 -24.15002 -23.60278 -23.12826 -21.59172 -20.26279 -19.28232 -19.03968 -18.63847 -18.30708 -17.19536 -16.91682 -16.57925 -16.26477 -16.21476 -15.91922 -15.67009 -15.36931 -15.12325 -14.90232 -14.72003 -14.46983 -14.23216 -13.79260 -13.68552 -13.66026 -13.23273 -13.15770 -13.12658 -12.87104 -12.84700 -12.49485 -12.39897 -12.19390 -12.03885 -11.98020 -11.77832 -11.26114 -11.11746 -11.05195 -10.96156 -10.83722 -10.26210 -10.09027 -10.02156 -9.11718 -8.96568 -7.97670 -5.23754 -0.93920 -0.12163 0.69214 1.41543 1.42381 1.52473 1.79158 2.02497 2.25373 2.52626 2.99818 3.08143 3.23959 3.35704 3.52386 3.59691 3.67723 3.72352 3.87739 3.89906 3.93216 4.02525 4.15357 4.22986 4.27835 4.33198 4.43719 4.50286 4.55431 4.69437 4.77294 4.77784 4.85663 4.85989 4.96467 5.01460 5.04502 5.10768 5.15001 5.27722 5.31483 5.40996 5.42409 5.45944 5.51694 5.56251 5.67050 5.92276 6.24966 6.56075 6.82852 7.23622 7.32220 8.07361 8.34917 9.25642 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008685 B = 0.004162 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.206475 B = 6726.233944 C = 8262.845871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.211 3.789 3 C 0.147 3.853 4 N -0.730 5.730 5 C -0.242 4.242 6 H 0.064 0.936 7 C -0.070 4.070 8 N -0.964 5.964 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.294 1.294 12 H -0.288 1.288 13 N -0.696 5.696 14 C 0.568 3.432 15 O -0.556 6.556 16 C -0.199 4.199 17 C 0.124 3.876 18 N -0.519 5.519 19 C 0.185 3.815 20 C -0.139 4.139 21 C -0.075 4.075 22 C -0.123 4.123 23 C -0.091 4.091 24 C -0.148 4.148 25 C -0.010 4.010 26 C -0.177 4.177 27 C -0.159 4.159 28 C -0.157 4.157 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.404 0.596 37 H 0.167 0.833 38 H 0.210 0.790 39 H 0.179 0.821 40 H 0.164 0.836 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.902 -12.046 11.691 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.126 3.874 3 C 0.019 3.981 4 N -0.373 5.373 5 C -0.374 4.374 6 H 0.082 0.918 7 C -0.262 4.262 8 N -0.615 5.615 9 Si 0.797 3.203 10 H -0.196 1.196 11 H -0.222 1.222 12 H -0.215 1.215 13 N -0.347 5.347 14 C 0.356 3.644 15 O -0.437 6.437 16 C -0.204 4.204 17 C -0.020 4.020 18 N -0.226 5.226 19 C 0.014 3.986 20 C -0.141 4.141 21 C -0.094 4.094 22 C -0.141 4.141 23 C -0.110 4.110 24 C -0.165 4.165 25 C -0.015 4.015 26 C -0.196 4.196 27 C -0.197 4.197 28 C -0.194 4.194 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.240 0.760 37 H 0.184 0.816 38 H 0.227 0.773 39 H 0.196 0.804 40 H 0.182 0.818 41 H 0.163 0.837 42 H 0.155 0.845 43 H 0.105 0.895 44 H 0.131 0.869 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.895 -11.866 11.426 21.551 hybrid contribution 0.973 1.467 -0.410 1.808 sum -12.922 -10.399 11.016 19.912 Atomic orbital electron populations 1.22198 0.92642 1.03037 1.03330 1.19894 0.94355 0.90340 0.82814 1.21102 0.84245 0.95190 0.97564 1.42311 1.00797 1.05058 1.89091 1.19585 0.89680 0.87173 1.40990 0.91796 1.25428 0.97073 0.99904 1.03829 1.69795 1.06506 1.25551 1.59664 0.85156 0.78511 0.79808 0.76818 1.19648 1.22169 1.21465 1.45830 1.48793 1.35302 1.04732 1.17997 0.79547 0.83612 0.83242 1.90549 1.40662 1.26468 1.86051 1.21966 1.05293 0.99629 0.93546 1.22921 0.91104 0.89580 0.98406 1.67191 1.23259 1.32441 0.99737 1.24031 0.88168 0.91578 0.94812 1.19344 1.02033 0.97994 0.94771 1.21462 0.95850 0.97084 0.95036 1.21398 0.97647 0.94828 1.00214 1.21505 0.97778 0.99800 0.91938 1.21699 0.98359 0.96766 0.99710 1.19193 0.95776 0.95261 0.91306 1.22253 0.99902 1.00275 0.97162 1.23190 0.99008 1.02012 0.95458 1.23042 1.03440 0.89998 1.02915 0.92156 0.90117 0.90615 0.96112 0.96328 0.79064 0.94048 0.76005 0.81637 0.77314 0.80411 0.81798 0.83705 0.84550 0.89458 0.86879 0.88140 0.87682 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 6.98 71.98 0.50 -3.93 16 2 C 0.21 7.18 0.54 3.61 0.00 7.18 16 3 C 0.15 6.58 5.03 86.38 0.43 7.01 16 4 N -0.73 -38.88 5.04 -343.46 -1.73 -40.61 16 5 C -0.24 -14.38 9.99 84.03 0.84 -13.54 16 6 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 7 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 8 N -0.96 -60.03 13.06 21.65 0.28 -59.75 16 9 Si 0.97 48.29 29.55 68.60 2.03 50.32 16 10 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 13 N -0.70 -23.33 4.68 -426.11 -1.99 -25.32 16 14 C 0.57 21.01 7.18 86.67 0.62 21.63 16 15 O -0.56 -23.23 9.97 -4.04 -0.04 -23.27 16 16 C -0.20 -6.63 6.07 -18.60 -0.11 -6.75 16 17 C 0.12 3.62 10.71 84.81 0.91 4.53 16 18 N -0.52 -13.82 10.22 -193.72 -1.98 -15.80 16 19 C 0.19 3.85 11.00 85.31 0.94 4.79 16 20 C -0.14 -3.24 5.74 -21.34 -0.12 -3.36 16 21 C -0.07 -1.17 9.82 22.33 0.22 -0.95 16 22 C -0.12 -1.97 9.94 22.06 0.22 -1.75 16 23 C -0.09 -2.02 9.96 22.10 0.22 -1.80 16 24 C -0.15 -4.54 9.32 22.20 0.21 -4.33 16 25 C -0.01 -0.32 5.90 -19.95 -0.12 -0.43 16 26 C -0.18 -5.37 4.84 -10.80 -0.05 -5.42 16 27 C -0.16 -3.69 9.64 30.62 0.30 -3.40 16 28 C -0.16 -3.45 9.82 30.62 0.30 -3.14 16 29 H 0.06 2.02 6.03 -2.39 -0.01 2.00 16 30 H 0.08 2.07 6.78 -2.38 -0.02 2.06 16 31 H 0.07 1.82 6.98 -2.39 -0.02 1.80 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.02 0.94 6.32 -2.39 -0.02 0.93 16 34 H 0.38 20.63 6.62 -92.71 -0.61 20.02 16 35 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 36 H 0.40 12.10 6.60 -92.71 -0.61 11.49 16 37 H 0.17 4.24 6.45 -2.91 -0.02 4.22 16 38 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 41 H 0.15 2.53 8.06 -2.92 -0.02 2.50 16 42 H 0.14 4.95 5.24 -2.91 -0.02 4.94 16 43 H 0.09 3.32 7.09 -2.39 -0.02 3.30 16 44 H 0.11 2.32 5.88 -2.38 -0.01 2.30 16 45 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.11 2.06 7.34 -2.39 -0.02 2.05 16 Total: -1.00 -78.08 375.95 2.14 -75.94 By element: Atomic # 1 Polarization: 46.07 SS G_CDS: -0.20 Total: 45.87 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 5.77 Total: -7.38 kcal Atomic # 7 Polarization: -136.06 SS G_CDS: -5.42 Total: -141.48 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.04 Total: -23.27 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -78.08 2.14 -75.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715128198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.007 kcal (2) G-P(sol) polarization free energy of solvation -78.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds