Wall clock time and date at job start Tue Mar 31 2020 22:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30280 * 126.28154 * 2 1 4 4 N 1.28670 * 109.38026 * 180.02562 * 3 2 1 5 5 C 1.30280 * 109.38016 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.27892 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47166 * 90.02119 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99635 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 12 12 C 1.53000 * 109.47637 * 90.00039 * 11 9 7 13 13 N 1.46896 * 109.47529 * 179.97438 * 12 11 9 14 14 C 1.46900 * 110.99815 * 66.04239 * 13 12 11 15 15 C 1.46900 * 111.00211 * 189.99840 * 13 12 11 16 16 C 1.50697 * 109.47417 * 169.99939 * 15 13 12 17 17 O 1.21294 * 119.99835 * 359.97438 * 16 15 13 18 18 N 1.34770 * 120.00251 * 180.02562 * 16 15 13 19 19 C 1.37101 * 120.00313 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99163 * 359.97438 * 19 18 16 21 21 C 1.38940 * 120.00148 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00076 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00187 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47090 * 90.00189 * 23 21 19 25 25 H 1.48501 * 109.47536 * 210.00002 * 23 21 19 26 26 H 1.48494 * 109.47113 * 330.00127 * 23 21 19 27 27 O 1.34360 * 126.28435 * 180.29342 * 2 1 3 28 28 H 1.09000 * 109.47676 * 89.97331 * 1 2 3 29 29 H 1.09002 * 109.46912 * 209.97496 * 1 2 3 30 30 H 1.09005 * 109.47256 * 329.96799 * 1 2 3 31 31 H 1.08998 * 109.46890 * 330.02109 * 6 5 4 32 32 H 1.09002 * 109.46875 * 210.01911 * 6 5 4 33 33 H 1.08995 * 109.47693 * 90.00207 * 10 9 7 34 34 H 1.09003 * 109.47006 * 210.00121 * 10 9 7 35 35 H 1.09004 * 109.47665 * 329.99813 * 10 9 7 36 36 H 1.09002 * 109.47192 * 209.99937 * 11 9 7 37 37 H 1.08996 * 109.47342 * 329.99648 * 11 9 7 38 38 H 1.09002 * 109.46747 * 300.00171 * 12 11 9 39 39 H 1.08996 * 109.47074 * 59.99445 * 12 11 9 40 40 H 1.09003 * 109.47069 * 60.00826 * 14 13 12 41 41 H 1.09003 * 109.46672 * 180.02562 * 14 13 12 42 42 H 1.08995 * 109.47640 * 300.00092 * 14 13 12 43 43 H 1.08998 * 109.47051 * 290.00219 * 15 13 12 44 44 H 1.08996 * 109.47090 * 49.99653 * 15 13 12 45 45 H 0.97003 * 120.00051 * 359.97438 * 18 16 15 46 46 H 0.97003 * 120.00239 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8177 -1.4638 -0.0029 7 6 5.2357 -1.7446 1.4174 8 8 4.5816 -1.3067 2.3401 9 7 6.3368 -2.4824 1.6624 10 6 7.1272 -3.0109 0.5480 11 6 6.7465 -2.7504 3.0431 12 6 6.0853 -4.0414 3.5301 13 7 6.4967 -4.3104 4.9144 14 6 5.9751 -3.2845 5.8274 15 6 6.0773 -5.6534 5.3367 16 6 6.7208 -5.9885 6.6576 17 8 7.4567 -5.1874 7.1941 18 7 6.4793 -7.1785 7.2422 19 6 7.0643 -7.4832 8.4441 20 1 7.7189 -6.7695 8.9222 21 6 6.8149 -8.7098 9.0470 22 7 7.3760 -9.0020 10.1989 23 14 5.6820 -9.9438 8.2204 24 1 6.4769 -10.8247 7.3274 25 1 5.0075 -10.7676 9.2556 26 1 4.6610 -9.2202 7.4209 27 8 2.3021 -1.0830 -0.0055 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5143 31 1 5.6144 -0.9258 -0.5165 32 1 4.6242 -2.4050 -0.5175 33 1 7.8953 -2.2883 0.2724 34 1 7.5995 -3.9461 0.8489 35 1 6.4751 -3.1917 -0.3065 36 1 7.8303 -2.8589 3.0860 37 1 6.4389 -1.9217 3.6808 38 1 5.0015 -3.9329 3.4873 39 1 6.3929 -4.8701 2.8924 40 1 4.8860 -3.2773 5.7816 41 1 6.2948 -3.5077 6.8453 42 1 6.3576 -2.3074 5.5327 43 1 4.9929 -5.6784 5.4441 44 1 6.3851 -6.3826 4.5873 45 1 5.8910 -7.8193 6.8129 46 1 7.2016 -9.8583 10.6200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715812906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:24 Heat of formation + Delta-G solvation = -5.680286 kcal Electronic energy + Delta-G solvation = -28803.744294 eV Core-core repulsion = 24538.880944 eV Total energy + Delta-G solvation = -4264.863350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.57993 -40.40759 -38.78202 -36.96363 -36.51061 -35.66931 -34.09779 -33.88500 -31.77954 -31.65772 -29.94677 -27.95603 -27.67329 -27.04396 -25.35905 -24.06159 -23.19031 -22.78999 -21.27551 -19.75767 -19.33597 -18.27887 -18.14316 -17.56897 -17.18157 -16.77802 -16.29670 -15.93962 -15.40155 -15.23141 -15.08714 -14.88415 -14.37236 -14.21009 -14.04753 -13.71852 -13.65038 -13.45192 -13.27112 -13.11433 -13.00138 -12.87941 -12.72642 -12.69320 -12.43583 -12.20260 -12.14153 -11.92397 -11.47332 -11.33107 -11.31927 -11.03452 -10.88423 -10.60519 -10.46669 -9.98124 -9.81717 -9.54218 -9.16995 -8.56192 -8.18350 -7.98975 -6.31212 -3.82562 0.73099 1.76123 1.99806 2.10033 2.54920 3.01775 3.05757 3.14163 3.32650 3.73465 3.87069 3.90119 4.04565 4.10137 4.25104 4.48780 4.61618 4.75594 4.76395 4.78845 4.84792 4.91263 4.94675 5.07457 5.10489 5.14949 5.21627 5.24235 5.37841 5.39129 5.50646 5.62491 5.66288 5.78518 5.83755 5.92774 5.97362 6.09749 6.53713 6.85356 7.12863 7.26451 7.58361 7.64881 7.93967 8.14586 8.60184 8.95241 9.42350 9.83456 10.81905 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.001923 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.416410 B =14559.310713 C =15213.234687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.166 3.834 3 N -0.288 5.288 4 N -0.272 5.272 5 C 0.180 3.820 6 C -0.044 4.044 7 C 0.516 3.484 8 O -0.523 6.523 9 N -0.610 5.610 10 C 0.070 3.930 11 C 0.118 3.882 12 C 0.041 3.959 13 N -0.516 5.516 14 C 0.019 3.981 15 C 0.044 3.956 16 C 0.453 3.547 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 O -0.221 6.221 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.016 0.984 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 11.374 -28.108 31.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 N -0.136 5.136 4 N -0.118 5.118 5 C -0.031 4.031 6 C -0.085 4.085 7 C 0.302 3.698 8 O -0.398 6.398 9 N -0.344 5.344 10 C -0.073 4.073 11 C -0.004 4.004 12 C -0.088 4.088 13 N -0.240 5.240 14 C -0.128 4.128 15 C -0.087 4.087 16 C 0.239 3.761 17 O -0.439 6.439 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 O -0.100 6.100 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.035 0.965 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.202 0.798 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.999 13.254 -27.036 31.426 hybrid contribution -2.074 -2.546 -0.619 3.341 sum -11.074 10.708 -27.655 31.656 Atomic orbital electron populations 1.20385 0.80038 1.05996 1.05233 1.28028 0.97861 0.79484 0.99052 1.74401 0.95930 1.25555 1.17689 1.74360 1.12419 1.08859 1.16197 1.26833 0.84715 0.91324 1.00246 1.20146 0.90182 1.00488 0.97717 1.20054 0.80966 0.78683 0.90108 1.90803 1.52659 1.50569 1.45792 1.47766 1.26440 1.52116 1.08086 1.21968 0.96082 1.00378 0.88845 1.21549 1.00347 0.98127 0.80417 1.22429 0.97889 0.97742 0.90740 1.61521 1.59875 1.01806 1.00784 1.22602 0.96222 0.94416 0.99588 1.21888 0.97938 0.91310 0.97587 1.19613 0.86154 0.83332 0.87000 1.90529 1.39485 1.48505 1.65429 1.42212 1.44177 1.15345 1.21385 1.19426 1.26018 1.02537 0.95249 0.86244 1.25036 0.97848 0.97307 0.96023 1.69622 1.43139 1.23491 1.15902 0.86674 0.80971 0.81983 0.79762 1.19616 1.20203 1.19575 1.84745 1.17345 1.38388 1.69516 0.88214 0.88735 0.87370 0.84028 0.85358 0.91698 0.89959 0.90937 0.88854 0.89303 0.94790 0.90832 0.96521 0.88460 0.91831 0.93380 0.89325 0.79760 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.17 1.62 8.48 -12.94 -0.11 1.51 16 3 N -0.29 -3.66 12.22 32.55 0.40 -3.26 16 4 N -0.27 -3.57 12.22 32.55 0.40 -3.17 16 5 C 0.18 1.92 6.97 -12.94 -0.09 1.83 16 6 C -0.04 -0.29 4.88 -29.04 -0.14 -0.43 16 7 C 0.52 5.25 7.67 -10.98 -0.08 5.17 16 8 O -0.52 -7.98 15.62 5.56 0.09 -7.89 16 9 N -0.61 -5.05 2.87 -181.58 -0.52 -5.58 16 10 C 0.07 0.27 10.24 59.84 0.61 0.88 16 11 C 0.12 1.27 5.33 -4.05 -0.02 1.25 16 12 C 0.04 0.51 5.28 -3.83 -0.02 0.49 16 13 N -0.52 -8.29 4.50 -244.38 -1.10 -9.39 16 14 C 0.02 0.33 8.96 60.06 0.54 0.86 16 15 C 0.04 0.75 5.45 -4.98 -0.03 0.72 16 16 C 0.45 10.28 7.47 -10.99 -0.08 10.20 16 17 O -0.56 -14.80 13.91 5.55 0.08 -14.72 16 18 N -0.59 -14.07 5.09 -10.97 -0.06 -14.13 16 19 C -0.30 -8.57 10.16 -14.94 -0.15 -8.72 16 20 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 23 Si 0.88 19.32 27.74 -169.99 -4.71 14.60 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 27 O -0.22 -2.33 10.87 5.40 0.06 -2.27 16 28 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.14 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.13 0.38 7.40 -51.93 -0.38 -0.01 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 35 H 0.07 0.09 6.44 -51.93 -0.33 -0.24 16 36 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.09 1.16 5.84 -51.93 -0.30 0.85 16 38 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 39 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 40 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.10 1.95 5.83 -51.93 -0.30 1.64 16 42 H 0.06 0.96 6.47 -51.93 -0.34 0.63 16 43 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 44 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 45 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -39.51 387.14 -4.55 -44.06 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.49 Total: 5.96 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 0.70 Total: 14.92 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.11 Total: -60.50 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.22 Total: -24.87 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.51 -4.55 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715812906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.380 kcal (2) G-P(sol) polarization free energy of solvation -39.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds