Wall clock time and date at job start Tue Mar 31 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30280 * 126.28154 * 2 1 4 4 N 1.28670 * 109.38026 * 180.02562 * 3 2 1 5 5 C 1.30280 * 109.38016 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.27892 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47166 * 90.02119 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99635 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 12 12 C 1.53000 * 109.47637 * 90.00039 * 11 9 7 13 13 N 1.46896 * 109.47529 * 179.97438 * 12 11 9 14 14 C 1.46900 * 110.99815 * 66.04239 * 13 12 11 15 15 C 1.46900 * 111.00211 * 189.99840 * 13 12 11 16 16 C 1.50697 * 109.47417 * 169.99939 * 15 13 12 17 17 O 1.21294 * 119.99835 * 359.97438 * 16 15 13 18 18 N 1.34770 * 120.00251 * 180.02562 * 16 15 13 19 19 C 1.37101 * 120.00313 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99163 * 359.97438 * 19 18 16 21 21 C 1.38940 * 120.00148 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00076 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00187 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47090 * 90.00189 * 23 21 19 25 25 H 1.48501 * 109.47536 * 210.00002 * 23 21 19 26 26 H 1.48494 * 109.47113 * 330.00127 * 23 21 19 27 27 O 1.34360 * 126.28435 * 180.29342 * 2 1 3 28 28 H 1.09000 * 109.47676 * 89.97331 * 1 2 3 29 29 H 1.09002 * 109.46912 * 209.97496 * 1 2 3 30 30 H 1.09005 * 109.47256 * 329.96799 * 1 2 3 31 31 H 1.08998 * 109.46890 * 330.02109 * 6 5 4 32 32 H 1.09002 * 109.46875 * 210.01911 * 6 5 4 33 33 H 1.08995 * 109.47693 * 90.00207 * 10 9 7 34 34 H 1.09003 * 109.47006 * 210.00121 * 10 9 7 35 35 H 1.09004 * 109.47665 * 329.99813 * 10 9 7 36 36 H 1.09002 * 109.47192 * 209.99937 * 11 9 7 37 37 H 1.08996 * 109.47342 * 329.99648 * 11 9 7 38 38 H 1.09002 * 109.46747 * 300.00171 * 12 11 9 39 39 H 1.08996 * 109.47074 * 59.99445 * 12 11 9 40 40 H 1.09003 * 109.47069 * 60.00826 * 14 13 12 41 41 H 1.09003 * 109.46672 * 180.02562 * 14 13 12 42 42 H 1.08995 * 109.47640 * 300.00092 * 14 13 12 43 43 H 1.08998 * 109.47051 * 290.00219 * 15 13 12 44 44 H 1.08996 * 109.47090 * 49.99653 * 15 13 12 45 45 H 0.97003 * 120.00051 * 359.97438 * 18 16 15 46 46 H 0.97003 * 120.00239 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8177 -1.4638 -0.0029 7 6 5.2357 -1.7446 1.4174 8 8 4.5816 -1.3067 2.3401 9 7 6.3368 -2.4824 1.6624 10 6 7.1272 -3.0109 0.5480 11 6 6.7465 -2.7504 3.0431 12 6 6.0853 -4.0414 3.5301 13 7 6.4967 -4.3104 4.9144 14 6 5.9751 -3.2845 5.8274 15 6 6.0773 -5.6534 5.3367 16 6 6.7208 -5.9885 6.6576 17 8 7.4567 -5.1874 7.1941 18 7 6.4793 -7.1785 7.2422 19 6 7.0643 -7.4832 8.4441 20 1 7.7189 -6.7695 8.9222 21 6 6.8149 -8.7098 9.0470 22 7 7.3760 -9.0020 10.1989 23 14 5.6820 -9.9438 8.2204 24 1 6.4769 -10.8247 7.3274 25 1 5.0075 -10.7676 9.2556 26 1 4.6610 -9.2202 7.4209 27 8 2.3021 -1.0830 -0.0055 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5143 31 1 5.6144 -0.9258 -0.5165 32 1 4.6242 -2.4050 -0.5175 33 1 7.8953 -2.2883 0.2724 34 1 7.5995 -3.9461 0.8489 35 1 6.4751 -3.1917 -0.3065 36 1 7.8303 -2.8589 3.0860 37 1 6.4389 -1.9217 3.6808 38 1 5.0015 -3.9329 3.4873 39 1 6.3929 -4.8701 2.8924 40 1 4.8860 -3.2773 5.7816 41 1 6.2948 -3.5077 6.8453 42 1 6.3576 -2.3074 5.5327 43 1 4.9929 -5.6784 5.4441 44 1 6.3851 -6.3826 4.5873 45 1 5.8910 -7.8193 6.8129 46 1 7.2016 -9.8583 10.6200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715812906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:23 Heat of formation + Delta-G solvation = -42.751225 kcal Electronic energy + Delta-G solvation = -28805.351810 eV Core-core repulsion = 24538.880944 eV Total energy + Delta-G solvation = -4266.470867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.32324 -41.17786 -40.47265 -38.22990 -37.28834 -36.59065 -35.87890 -34.71495 -33.75630 -32.38189 -30.83642 -29.31156 -28.33703 -27.69833 -26.84486 -25.43135 -24.00858 -23.54451 -22.38889 -21.26949 -20.47990 -20.13561 -18.87162 -18.29103 -17.99170 -17.81203 -17.45251 -16.92553 -16.66520 -16.60357 -16.23246 -15.77401 -15.60007 -15.41594 -15.16757 -14.88985 -14.46803 -14.35641 -14.23670 -14.00241 -13.96106 -13.71450 -13.60886 -13.52447 -13.45505 -13.23000 -13.09869 -13.01313 -12.86525 -12.63186 -12.56854 -12.40855 -12.05274 -11.98176 -11.87214 -11.47251 -11.26475 -10.55285 -10.42461 -10.23366 -9.79666 -9.32015 -8.40770 -6.01606 0.03020 1.12549 1.25588 1.30083 1.35568 1.39822 1.44461 1.87407 1.95427 2.23219 2.65286 2.76433 3.14095 3.23063 3.33599 3.41259 3.76613 3.91241 4.04893 4.06734 4.10514 4.29688 4.31055 4.34905 4.36894 4.39846 4.45827 4.52514 4.54254 4.56366 4.59146 4.68350 4.76852 4.78954 4.92500 5.01667 5.05781 5.13946 5.38065 5.53144 5.84105 5.96253 6.09033 6.23747 6.59997 6.88851 6.96000 7.17535 7.39972 7.97353 8.76841 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.001923 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.416410 B =14559.310713 C =15213.234687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.171 3.829 3 N -0.333 5.333 4 N -0.312 5.312 5 C 0.178 3.822 6 C -0.037 4.037 7 C 0.511 3.489 8 O -0.586 6.586 9 N -0.602 5.602 10 C 0.059 3.941 11 C 0.121 3.879 12 C 0.051 3.949 13 N -0.531 5.531 14 C 0.029 3.971 15 C 0.055 3.945 16 C 0.451 3.549 17 O -0.604 6.604 18 N -0.592 5.592 19 C -0.326 4.326 20 H 0.055 0.945 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.254 1.254 25 H -0.276 1.276 26 H -0.233 1.233 27 O -0.228 6.228 28 H 0.127 0.873 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.103 0.897 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.129 0.871 45 H 0.389 0.611 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 9.174 -32.563 35.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 N -0.179 5.179 4 N -0.158 5.158 5 C -0.034 4.034 6 C -0.077 4.077 7 C 0.299 3.701 8 O -0.466 6.466 9 N -0.334 5.334 10 C -0.081 4.081 11 C -0.002 4.002 12 C -0.078 4.078 13 N -0.256 5.256 14 C -0.120 4.120 15 C -0.076 4.076 16 C 0.239 3.761 17 O -0.488 6.488 18 N -0.234 5.234 19 C -0.456 4.456 20 H 0.073 0.927 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.178 1.178 25 H -0.202 1.202 26 H -0.157 1.157 27 O -0.108 6.108 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.190 0.810 32 H 0.191 0.809 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.121 0.879 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.146 0.854 45 H 0.225 0.775 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.790 11.072 -31.557 35.141 hybrid contribution -1.418 -1.753 0.802 2.393 sum -12.208 9.319 -30.756 34.377 Atomic orbital electron populations 1.20733 0.76553 1.07092 1.07246 1.29053 0.99480 0.78737 0.96684 1.74308 0.96386 1.27182 1.20035 1.74251 1.13073 1.10509 1.17959 1.27596 0.85819 0.91191 0.98808 1.20441 0.89200 1.02384 0.95637 1.20680 0.80623 0.77874 0.90972 1.90783 1.54792 1.53137 1.47897 1.47826 1.26155 1.51331 1.08104 1.22355 0.96722 1.00885 0.88170 1.21346 1.00633 0.96434 0.81795 1.22450 0.97422 0.99364 0.88550 1.61467 1.60482 1.01134 1.02473 1.22397 0.96361 0.95348 0.97856 1.21843 0.98499 0.92631 0.94610 1.20834 0.84779 0.82042 0.88435 1.90522 1.41370 1.49793 1.67134 1.42026 1.44679 1.16437 1.20232 1.18989 1.26813 1.02292 0.97470 0.92678 1.26126 0.99549 0.99399 0.96453 1.69809 1.45063 1.24608 1.18074 0.85355 0.78816 0.78314 0.78964 1.17825 1.20168 1.15666 1.84765 1.17572 1.38672 1.69790 0.85534 0.87136 0.86634 0.80960 0.80950 0.90308 0.89225 0.87578 0.87881 0.92313 0.95660 0.87880 0.96104 0.92376 0.90980 0.91137 0.85366 0.77528 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 71.24 0.75 0.35 16 2 C 0.17 3.22 8.48 88.34 0.75 3.96 16 3 N -0.33 -8.57 12.22 -165.50 -2.02 -10.59 16 4 N -0.31 -8.26 12.22 -165.50 -2.02 -10.28 16 5 C 0.18 3.59 6.97 88.34 0.62 4.21 16 6 C -0.04 -0.36 4.88 29.10 0.14 -0.22 16 7 C 0.51 9.44 7.67 87.65 0.67 10.11 16 8 O -0.59 -17.97 15.62 -3.04 -0.05 -18.02 16 9 N -0.60 -8.28 2.87 -846.78 -2.43 -10.71 16 10 C 0.06 0.18 10.24 127.77 1.31 1.49 16 11 C 0.12 2.43 5.33 86.38 0.46 2.89 16 12 C 0.05 1.11 5.28 86.30 0.46 1.56 16 13 N -0.53 -16.28 4.50 -927.08 -4.17 -20.46 16 14 C 0.03 0.98 8.96 127.69 1.14 2.12 16 15 C 0.06 1.72 5.45 85.56 0.47 2.18 16 16 C 0.45 20.47 7.47 87.66 0.66 21.12 16 17 O -0.60 -33.50 13.91 -3.07 -0.04 -33.54 16 18 N -0.59 -27.91 5.09 -307.00 -1.56 -29.47 16 19 C -0.33 -19.16 10.16 84.04 0.85 -18.30 16 20 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 21 C -0.02 -0.94 5.50 84.92 0.47 -0.47 16 22 N -0.93 -56.50 13.96 21.66 0.30 -56.20 16 23 Si 0.97 38.60 27.74 68.60 1.90 40.50 16 24 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 25 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 27 O -0.23 -4.52 10.87 -3.60 -0.04 -4.56 16 28 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.17 0.59 8.11 -2.39 -0.02 0.57 16 32 H 0.17 0.11 7.40 -2.39 -0.02 0.09 16 33 H 0.08 0.08 8.14 -2.39 -0.02 0.07 16 34 H 0.09 0.21 8.07 -2.39 -0.02 0.19 16 35 H 0.11 -0.36 6.44 -2.38 -0.02 -0.37 16 36 H 0.10 1.85 8.07 -2.39 -0.02 1.83 16 37 H 0.06 1.55 5.84 -2.39 -0.01 1.54 16 38 H 0.03 0.61 8.12 -2.39 -0.02 0.59 16 39 H 0.10 1.66 7.93 -2.39 -0.02 1.65 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 2.45 5.83 -2.39 -0.01 2.43 16 42 H 0.07 2.28 6.47 -2.39 -0.02 2.27 16 43 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 44 H 0.13 3.04 7.93 -2.39 -0.02 3.02 16 45 H 0.39 15.12 5.76 -92.71 -0.53 14.58 16 46 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -97.06 387.14 -0.97 -98.03 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.43 Total: 24.30 kcal Atomic # 6 Polarization: 22.27 SS G_CDS: 8.74 Total: 31.01 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -11.91 Total: -137.72 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -0.13 Total: -56.12 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Total: -97.06 -0.97 -98.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715812906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.280 kcal (2) G-P(sol) polarization free energy of solvation -97.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds