Wall clock time and date at job start Tue Mar 31 2020 22:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.50698 * 109.47431 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00114 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00028 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99915 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47562 * 34.99602 * 11 10 8 13 13 C 1.53004 * 109.47193 * 274.99653 * 11 10 8 14 14 C 1.53007 * 109.47116 * 154.99850 * 11 10 8 15 15 N 1.46902 * 109.46828 * 304.99781 * 14 11 10 16 16 C 1.46900 * 110.99626 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.46985 * 180.02562 * 16 15 14 18 18 O 1.21296 * 120.00229 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00309 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00586 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99658 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00459 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99607 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00094 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46774 * 90.00339 * 24 22 20 26 26 H 1.48503 * 109.47011 * 209.99964 * 24 22 20 27 27 H 1.48495 * 109.47163 * 329.99930 * 24 22 20 28 28 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 29 29 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 30 30 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 31 31 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 32 32 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 33 33 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 34 34 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 35 35 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 36 36 H 0.97000 * 119.99807 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46825 * 300.00400 * 13 11 10 38 38 H 1.09004 * 109.46989 * 60.00040 * 13 11 10 39 39 H 1.08999 * 109.46945 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.46892 * 64.99734 * 14 11 10 41 41 H 1.08993 * 109.47196 * 184.99878 * 14 11 10 42 42 H 1.00907 * 110.99777 * 56.04697 * 15 14 11 43 43 H 1.08999 * 109.47114 * 299.99989 * 16 15 14 44 44 H 1.09001 * 109.47248 * 60.00060 * 16 15 14 45 45 H 0.97001 * 119.99624 * 359.97438 * 19 17 16 46 46 H 0.97003 * 119.99625 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.4928 -2.5289 -1.4427 9 8 7.0035 -2.8560 -0.3923 10 7 7.0589 -2.8947 -2.6099 11 6 8.2913 -3.6867 -2.6098 12 1 8.2789 -4.3780 -1.7671 13 6 9.4974 -2.7535 -2.4860 14 6 8.3898 -4.4769 -3.9163 15 7 7.1750 -5.2837 -4.0933 16 6 7.2340 -6.0573 -5.3408 17 6 5.9735 -6.8699 -5.4880 18 8 5.1110 -6.8109 -4.6372 19 7 5.8049 -7.6631 -6.5645 20 6 4.6584 -8.4029 -6.6982 21 1 3.8904 -8.3503 -5.9406 22 6 4.4844 -9.2202 -7.8083 23 7 5.4190 -9.2845 -8.7297 24 14 2.9225 -10.2287 -7.9900 25 1 1.9040 -9.4356 -8.7240 26 1 3.2210 -11.4717 -8.7457 27 1 2.4010 -10.5803 -6.6448 28 7 2.3030 -1.0840 -0.0002 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5142 32 1 5.5843 -0.8849 0.5130 33 1 4.6208 -2.3815 0.5141 34 1 4.4380 -2.2655 -1.9560 35 1 5.4015 -0.7690 -1.9571 36 1 6.6503 -2.6334 -3.4499 37 1 9.5098 -2.0622 -3.3287 38 1 9.4272 -2.1905 -1.5553 39 1 10.4143 -3.3429 -2.4855 40 1 8.4916 -3.7852 -4.7524 41 1 9.2594 -5.1329 -3.8795 42 1 6.3491 -4.7045 -4.0661 43 1 7.3276 -5.3762 -6.1866 44 1 8.0957 -6.7242 -5.3143 45 1 6.4948 -7.7106 -7.2447 46 1 5.2977 -9.8554 -9.5045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715942494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:11 Heat of formation + Delta-G solvation = -13.961342 kcal Electronic energy + Delta-G solvation = -28237.612093 eV Core-core repulsion = 23972.389650 eV Total energy + Delta-G solvation = -4265.222444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.88682 -40.12998 -38.36485 -36.94835 -36.40342 -34.95381 -34.31057 -33.68089 -32.14718 -31.26056 -30.90128 -29.44678 -27.64822 -26.18535 -25.03083 -23.81404 -23.29786 -21.91274 -21.13556 -20.56094 -19.29484 -18.50017 -17.95116 -17.82753 -17.34179 -16.49892 -16.15307 -15.91440 -15.42491 -15.09215 -14.72671 -14.52319 -14.35661 -14.04677 -13.95225 -13.91725 -13.70310 -13.49347 -13.13744 -13.08580 -12.83608 -12.66052 -12.61690 -12.44064 -11.99034 -11.79686 -11.65591 -11.63601 -11.57964 -11.49684 -11.30945 -11.10275 -11.01789 -10.41097 -10.27345 -10.24238 -9.97828 -9.53658 -9.26857 -8.51261 -8.13568 -7.99134 -6.44464 -3.85297 0.80903 1.90351 2.40815 2.46767 2.99619 3.16036 3.25086 3.31267 3.35975 3.73249 3.86905 4.00936 4.23760 4.30025 4.51196 4.59284 4.72954 4.83686 4.95995 5.03164 5.03871 5.06614 5.13250 5.17334 5.23586 5.25959 5.37949 5.39635 5.49708 5.52135 5.57375 5.59870 5.72071 5.72264 5.87597 5.92443 6.01971 6.22027 6.33454 7.09571 7.27525 7.52820 7.54652 7.86328 8.02543 8.03356 8.58088 9.15191 9.51060 10.02334 10.73193 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008777 B = 0.002213 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.258212 B =12647.988581 C =15476.431083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.168 3.832 3 N -0.389 5.389 4 O 0.076 5.924 5 C 0.186 3.814 6 C -0.011 4.011 7 C -0.142 4.142 8 C 0.525 3.475 9 O -0.538 6.538 10 N -0.721 5.721 11 C 0.144 3.856 12 H 0.099 0.901 13 C -0.161 4.161 14 C 0.050 3.950 15 N -0.667 5.667 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 N -0.477 5.477 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.399 0.601 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.087 0.913 42 H 0.347 0.653 43 H 0.043 0.957 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 19.719 11.749 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.098 5.098 4 O 0.018 5.982 5 C -0.034 4.034 6 C -0.050 4.050 7 C -0.183 4.183 8 C 0.311 3.689 9 O -0.415 6.415 10 N -0.373 5.373 11 C 0.039 3.961 12 H 0.117 0.883 13 C -0.220 4.220 14 C -0.080 4.080 15 N -0.300 5.300 16 C -0.083 4.083 17 C 0.224 3.776 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 N -0.211 5.211 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.233 0.767 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.106 0.894 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.218 19.377 13.295 23.604 hybrid contribution -0.504 0.171 -1.879 1.953 sum 1.715 19.548 11.416 22.702 Atomic orbital electron populations 1.20160 0.82871 1.04700 1.04483 1.25966 1.00711 0.83465 1.00291 1.74643 0.89414 1.23940 1.21791 1.85290 1.22374 1.24865 1.65686 1.28837 0.97036 0.82097 0.95454 1.19957 0.87752 0.99214 0.98111 1.21647 0.97265 1.02027 0.97362 1.20209 0.85099 0.79745 0.83891 1.90726 1.64286 1.55422 1.31063 1.45991 1.27361 1.55407 1.08494 1.21063 0.83203 0.92246 0.99548 0.88268 1.22149 0.97642 0.99908 1.02314 1.22314 0.95080 0.95430 0.95210 1.60025 1.03937 1.29418 1.36593 1.21693 0.98996 0.97115 0.90459 1.19799 0.88811 0.84805 0.84159 1.90534 1.44825 1.68820 1.42479 1.41863 1.19348 1.38764 1.19986 1.19703 0.96515 1.20111 1.06566 0.87914 1.25266 0.99038 0.98154 0.95486 1.69611 1.33759 1.39994 1.10930 0.85855 0.81022 0.78825 0.78594 1.20425 1.20898 1.19356 1.71973 0.99742 1.29297 1.20068 0.89166 0.88874 0.89550 0.87087 0.86051 0.87383 0.88090 0.76713 0.92552 0.91843 0.91350 0.94983 0.89419 0.83304 0.93867 0.89437 0.77467 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.01 0.38 -0.06 16 2 C 0.17 1.79 8.22 -156.37 -1.28 0.50 16 3 N -0.39 -4.42 12.16 30.90 0.38 -4.05 16 4 O 0.08 0.78 11.31 18.11 0.20 0.99 16 5 C 0.19 1.79 7.77 -13.06 -0.10 1.69 16 6 C -0.01 -0.08 5.13 -27.88 -0.14 -0.23 16 7 C -0.14 -1.03 5.68 -27.88 -0.16 -1.18 16 8 C 0.52 5.25 7.79 -10.99 -0.09 5.16 16 9 O -0.54 -7.18 15.64 5.56 0.09 -7.09 16 10 N -0.72 -6.54 4.36 -53.80 -0.23 -6.78 16 11 C 0.14 1.43 2.88 -67.93 -0.20 1.24 16 12 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 13 C -0.16 -1.30 9.48 37.16 0.35 -0.94 16 14 C 0.05 0.52 5.30 -3.82 -0.02 0.50 16 15 N -0.67 -9.92 6.12 -115.06 -0.70 -10.62 16 16 C 0.05 0.83 6.17 -4.98 -0.03 0.80 16 17 C 0.44 10.11 7.82 -10.99 -0.09 10.02 16 18 O -0.58 -15.57 15.78 5.54 0.09 -15.48 16 19 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 20 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 24 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 N -0.48 -5.46 11.55 -9.87 -0.11 -5.58 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.11 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.12 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.40 2.87 8.15 -40.82 -0.33 2.54 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.35 5.24 7.28 -39.29 -0.29 4.95 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 398.33 15.07 6.00 6.00 Total: -1.00 -35.18 398.33 -7.03 -42.21 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.76 Total: 12.54 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -1.62 Total: 9.58 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -0.01 Total: -64.62 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.38 Total: -21.58 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.18 -7.03 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715942494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.246 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds