Wall clock time and date at job start Tue Mar 31 2020 22:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.50698 * 109.47431 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00114 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00028 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99915 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47562 * 34.99602 * 11 10 8 13 13 C 1.53004 * 109.47193 * 274.99653 * 11 10 8 14 14 C 1.53007 * 109.47116 * 154.99850 * 11 10 8 15 15 N 1.46902 * 109.46828 * 304.99781 * 14 11 10 16 16 C 1.46900 * 110.99626 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.46985 * 180.02562 * 16 15 14 18 18 O 1.21296 * 120.00229 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00309 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00586 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99658 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00459 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99607 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00094 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46774 * 90.00339 * 24 22 20 26 26 H 1.48503 * 109.47011 * 209.99964 * 24 22 20 27 27 H 1.48495 * 109.47163 * 329.99930 * 24 22 20 28 28 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 29 29 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 30 30 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 31 31 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 32 32 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 33 33 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 34 34 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 35 35 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 36 36 H 0.97000 * 119.99807 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46825 * 300.00400 * 13 11 10 38 38 H 1.09004 * 109.46989 * 60.00040 * 13 11 10 39 39 H 1.08999 * 109.46945 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.46892 * 64.99734 * 14 11 10 41 41 H 1.08993 * 109.47196 * 184.99878 * 14 11 10 42 42 H 1.00907 * 110.99777 * 56.04697 * 15 14 11 43 43 H 1.08999 * 109.47114 * 299.99989 * 16 15 14 44 44 H 1.09001 * 109.47248 * 60.00060 * 16 15 14 45 45 H 0.97001 * 119.99624 * 359.97438 * 19 17 16 46 46 H 0.97003 * 119.99625 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.4928 -2.5289 -1.4427 9 8 7.0035 -2.8560 -0.3923 10 7 7.0589 -2.8947 -2.6099 11 6 8.2913 -3.6867 -2.6098 12 1 8.2789 -4.3780 -1.7671 13 6 9.4974 -2.7535 -2.4860 14 6 8.3898 -4.4769 -3.9163 15 7 7.1750 -5.2837 -4.0933 16 6 7.2340 -6.0573 -5.3408 17 6 5.9735 -6.8699 -5.4880 18 8 5.1110 -6.8109 -4.6372 19 7 5.8049 -7.6631 -6.5645 20 6 4.6584 -8.4029 -6.6982 21 1 3.8904 -8.3503 -5.9406 22 6 4.4844 -9.2202 -7.8083 23 7 5.4190 -9.2845 -8.7297 24 14 2.9225 -10.2287 -7.9900 25 1 1.9040 -9.4356 -8.7240 26 1 3.2210 -11.4717 -8.7457 27 1 2.4010 -10.5803 -6.6448 28 7 2.3030 -1.0840 -0.0002 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5142 32 1 5.5843 -0.8849 0.5130 33 1 4.6208 -2.3815 0.5141 34 1 4.4380 -2.2655 -1.9560 35 1 5.4015 -0.7690 -1.9571 36 1 6.6503 -2.6334 -3.4499 37 1 9.5098 -2.0622 -3.3287 38 1 9.4272 -2.1905 -1.5553 39 1 10.4143 -3.3429 -2.4855 40 1 8.4916 -3.7852 -4.7524 41 1 9.2594 -5.1329 -3.8795 42 1 6.3491 -4.7045 -4.0661 43 1 7.3276 -5.3762 -6.1866 44 1 8.0957 -6.7242 -5.3143 45 1 6.4948 -7.7106 -7.2447 46 1 5.2977 -9.8554 -9.5045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715942494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:10 Heat of formation + Delta-G solvation = -43.048787 kcal Electronic energy + Delta-G solvation = -28238.873420 eV Core-core repulsion = 23972.389650 eV Total energy + Delta-G solvation = -4266.483770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.67666 -40.95586 -40.11563 -37.95629 -37.19111 -36.03940 -35.67252 -35.03822 -33.25841 -32.90469 -31.69060 -30.09234 -28.95270 -26.95684 -26.60943 -24.69566 -24.48245 -22.68991 -21.89951 -21.35486 -21.04768 -19.90659 -19.30131 -18.62042 -18.25054 -17.75413 -17.16013 -16.90586 -16.65140 -16.34888 -16.01964 -15.87505 -15.40616 -15.24184 -15.04988 -14.80431 -14.49880 -14.37649 -14.30260 -14.00117 -13.69902 -13.53874 -13.48817 -13.33403 -13.17478 -13.06972 -13.00351 -12.77806 -12.60950 -12.41123 -12.36512 -12.24629 -12.12631 -12.09182 -11.88843 -11.50232 -11.05630 -10.80055 -10.35484 -10.04477 -10.00801 -9.29987 -8.46562 -5.94890 0.03950 1.12446 1.37921 1.42149 1.54584 1.64929 1.69951 2.06370 2.26166 2.29735 2.67726 2.91671 3.02768 3.21150 3.51976 3.62212 3.84155 3.91614 4.01756 4.13126 4.24679 4.30555 4.40431 4.44698 4.50405 4.52275 4.55012 4.61965 4.63444 4.72443 4.78320 4.79206 4.85257 4.91153 4.93862 5.08181 5.14160 5.33797 5.41440 5.57740 5.88276 6.10153 6.41198 6.55065 6.60873 7.09224 7.13470 7.27386 7.57402 8.12946 8.70691 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008777 B = 0.002213 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.258212 B =12647.988581 C =15476.431083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.161 3.839 3 N -0.408 5.408 4 O 0.074 5.926 5 C 0.197 3.803 6 C -0.006 4.006 7 C -0.132 4.132 8 C 0.522 3.478 9 O -0.576 6.576 10 N -0.715 5.715 11 C 0.146 3.854 12 H 0.068 0.932 13 C -0.152 4.152 14 C 0.055 3.945 15 N -0.687 5.687 16 C 0.065 3.935 17 C 0.435 3.565 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.275 1.275 28 N -0.506 5.506 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.344 0.656 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 20.604 10.714 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.119 5.119 4 O 0.017 5.983 5 C -0.023 4.023 6 C -0.046 4.046 7 C -0.173 4.173 8 C 0.309 3.691 9 O -0.456 6.456 10 N -0.367 5.367 11 C 0.041 3.959 12 H 0.086 0.914 13 C -0.210 4.210 14 C -0.074 4.074 15 N -0.320 5.320 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.199 1.199 28 N -0.241 5.241 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.246 0.754 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.163 0.837 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.858 20.279 12.222 23.849 hybrid contribution -0.649 -0.092 -1.514 1.650 sum 2.209 20.187 10.708 22.958 Atomic orbital electron populations 1.20345 0.80706 1.05712 1.05493 1.26612 1.02123 0.83023 0.99381 1.74629 0.89794 1.24519 1.22982 1.85262 1.22143 1.25018 1.65835 1.29092 0.97138 0.81964 0.94140 1.19992 0.87334 0.98643 0.98589 1.21601 0.95630 1.02837 0.97252 1.20622 0.85523 0.79441 0.83486 1.90712 1.65501 1.56983 1.32364 1.45969 1.27155 1.54759 1.08856 1.20972 0.84412 0.92308 0.98163 0.91396 1.22059 0.96952 0.99666 1.02369 1.22375 0.93293 0.95599 0.96134 1.59996 1.05534 1.30663 1.35826 1.21545 0.95460 0.97238 0.92445 1.20972 0.90251 0.83935 0.82543 1.90503 1.46992 1.69923 1.43669 1.41932 1.18910 1.39300 1.20904 1.19636 0.97483 1.22200 1.06931 0.90480 1.26007 1.01891 0.98562 0.94769 1.69665 1.34912 1.40302 1.11144 0.84960 0.77596 0.77736 0.78262 1.19547 1.19575 1.19948 1.71997 1.00640 1.30096 1.21351 0.88040 0.88208 0.88164 0.85597 0.87083 0.87544 0.85267 0.75412 0.90841 0.93050 0.90292 0.92306 0.88537 0.83695 0.90949 0.87706 0.76907 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.51 71.24 0.75 -0.08 16 2 C 0.16 3.36 8.22 138.46 1.14 4.50 16 3 N -0.41 -9.12 12.16 -60.32 -0.73 -9.86 16 4 O 0.07 1.48 11.31 74.85 0.85 2.33 16 5 C 0.20 3.70 7.77 88.38 0.69 4.39 16 6 C -0.01 -0.09 5.13 29.85 0.15 0.06 16 7 C -0.13 -1.77 5.68 29.85 0.17 -1.60 16 8 C 0.52 10.12 7.79 87.66 0.68 10.80 16 9 O -0.58 -15.47 15.64 -3.03 -0.05 -15.51 16 10 N -0.72 -12.05 4.36 -442.52 -1.93 -13.97 16 11 C 0.15 2.71 2.88 45.00 0.13 2.84 16 12 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 13 C -0.15 -2.12 9.48 71.98 0.68 -1.44 16 14 C 0.05 1.01 5.30 86.31 0.46 1.47 16 15 N -0.69 -19.35 6.12 -517.93 -3.17 -22.52 16 16 C 0.07 2.04 6.17 85.56 0.53 2.57 16 17 C 0.44 20.03 7.82 87.66 0.69 20.71 16 18 O -0.62 -33.99 15.78 -3.08 -0.05 -34.04 16 19 N -0.57 -28.70 5.29 -306.99 -1.62 -30.32 16 20 C -0.33 -18.70 9.68 84.04 0.81 -17.88 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 23 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 24 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 N -0.51 -11.53 11.55 -303.19 -3.50 -15.04 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.13 1.49 8.10 -2.39 -0.02 1.47 16 33 H 0.11 1.92 8.10 -2.39 -0.02 1.90 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.41 5.09 8.15 -92.71 -0.76 4.34 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.34 9.98 7.28 -89.69 -0.65 9.33 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 46 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -77.44 398.33 -1.65 -79.10 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -1.10 Total: 37.67 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 7.34 Total: 26.14 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -10.67 Total: -140.30 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: 0.75 Total: -47.22 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -77.44 -1.65 -79.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715942494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.050 kcal (2) G-P(sol) polarization free energy of solvation -77.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds