Wall clock time and date at job start Tue Mar 31 2020 22:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30857 * 125.41608 * 2 1 4 4 C 1.33325 * 109.68247 * 179.74277 * 3 2 1 5 5 C 1.36666 * 107.78233 * 0.38031 * 4 3 2 6 6 C 1.46769 * 126.84346 * 179.89752 * 5 4 3 7 7 O 1.21679 * 120.00046 * 185.01016 * 6 5 4 8 8 N 1.34780 * 119.99760 * 5.01554 * 6 5 4 9 9 C 1.46494 * 119.99720 * 174.64792 * 8 6 5 10 10 C 1.52998 * 109.47117 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47329 * 305.00508 * 10 9 8 12 12 O 1.42901 * 109.47090 * 65.00250 * 10 9 8 13 13 C 1.52998 * 109.47489 * 184.99699 * 10 9 8 14 14 N 1.46898 * 109.47397 * 180.02562 * 13 10 9 15 15 C 1.46902 * 110.99999 * 180.02562 * 14 13 10 16 16 C 1.50705 * 109.47101 * 179.97438 * 15 14 13 17 17 O 1.21296 * 119.99867 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99838 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99772 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00089 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00027 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00417 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46987 * 60.00076 * 23 21 19 25 25 H 1.48496 * 109.47591 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47117 * 300.00723 * 23 21 19 27 27 N 1.34490 * 125.41426 * 179.97438 * 2 1 3 28 28 C 1.46499 * 126.47568 * 0.02562 * 27 2 1 29 29 H 1.08996 * 109.46842 * 270.03129 * 1 2 3 30 30 H 1.09000 * 109.46581 * 30.02310 * 1 2 3 31 31 H 1.08992 * 109.47038 * 150.02319 * 1 2 3 32 32 H 1.07992 * 126.11048 * 180.27045 * 4 3 2 33 33 H 0.96994 * 119.99823 * 354.64662 * 8 6 5 34 34 H 1.09004 * 109.47591 * 60.00103 * 9 8 6 35 35 H 1.08998 * 109.47323 * 299.99814 * 9 8 6 36 36 H 0.96701 * 114.00224 * 59.99378 * 12 10 9 37 37 H 1.09000 * 109.47495 * 300.00707 * 13 10 9 38 38 H 1.09007 * 109.47167 * 60.00184 * 13 10 9 39 39 H 1.00890 * 111.00059 * 56.04547 * 14 13 10 40 40 H 1.08992 * 109.47326 * 299.99915 * 15 14 13 41 41 H 1.08998 * 109.46974 * 60.00044 * 15 14 13 42 42 H 0.97000 * 120.00428 * 0.02562 * 18 16 15 43 43 H 0.97001 * 119.99856 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.46649 * 272.99572 * 28 27 2 45 45 H 1.08998 * 109.47310 * 32.99452 * 28 27 2 46 46 H 1.08999 * 109.47153 * 152.99890 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 0.0056 5 6 3.5976 -0.6609 0.0007 6 6 4.8028 -1.4984 0.0020 7 8 4.7038 -2.7072 -0.0949 8 7 6.0194 -0.9284 0.1107 9 6 7.2137 -1.7683 0.2301 10 6 8.4540 -0.8789 0.3374 11 1 8.4859 -0.1959 -0.5116 12 8 8.3975 -0.1272 1.5514 13 6 9.7099 -1.7527 0.3366 14 7 10.9006 -0.8987 0.4403 15 6 12.1284 -1.7054 0.4419 16 6 13.3261 -0.7970 0.5486 17 8 13.1721 0.4042 0.6171 18 7 14.5684 -1.3194 0.5690 19 6 15.6580 -0.4929 0.6655 20 1 15.5209 0.5766 0.7257 21 6 16.9387 -1.0314 0.6871 22 7 17.1055 -2.3329 0.6144 23 14 18.4234 0.0945 0.8193 24 1 18.3415 0.8757 2.0797 25 1 19.6644 -0.7209 0.8216 26 1 18.4444 1.0240 -0.3386 27 7 2.2864 -1.0961 0.0005 28 6 1.8310 -2.4885 0.0006 29 1 -0.3633 0.0006 1.0276 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5134 32 1 4.3978 1.3721 0.0111 33 1 6.1040 0.0379 0.1098 34 1 7.2992 -2.4056 -0.6501 35 1 7.1334 -2.3895 1.1221 36 1 8.3668 -0.6716 2.3500 37 1 9.6779 -2.4356 1.1856 38 1 9.7530 -2.3261 -0.5894 39 1 10.8533 -0.3101 1.2583 40 1 12.1132 -2.3885 1.2911 41 1 12.1883 -2.2777 -0.4838 42 1 14.6916 -2.2800 0.5146 43 1 17.9996 -2.7089 0.6298 44 1 1.6667 -2.8169 1.0269 45 1 0.8991 -2.5660 -0.5593 46 1 2.5885 -3.1185 -0.4656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716098868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:33 Heat of formation + Delta-G solvation = -62.340135 kcal Electronic energy + Delta-G solvation = -27902.690920 eV Core-core repulsion = 23635.370614 eV Total energy + Delta-G solvation = -4267.320306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.69862 -39.85198 -38.54011 -37.88109 -35.19478 -34.76226 -34.22469 -33.78612 -32.45858 -31.24482 -30.53730 -28.47078 -27.46737 -26.75629 -24.92180 -23.57721 -22.81529 -21.97211 -20.86730 -20.20362 -19.27268 -18.35119 -17.90701 -17.08212 -16.80634 -16.59794 -16.46246 -15.91169 -15.59406 -15.34409 -14.97362 -14.56584 -14.53938 -14.44131 -14.18422 -13.82059 -13.78397 -13.62314 -13.46307 -13.33901 -13.03600 -12.96984 -12.83543 -12.79416 -12.41927 -11.83667 -11.60131 -11.51670 -11.20396 -11.00896 -10.84074 -10.44494 -10.42613 -10.23111 -10.19585 -10.14163 -9.56709 -9.49982 -8.87659 -8.47695 -8.10352 -7.96243 -6.41725 -3.82637 0.86623 1.97862 2.36397 2.84590 2.95142 3.20572 3.26226 3.30782 3.86687 3.89201 3.93284 4.13198 4.20449 4.23825 4.30455 4.47686 4.66379 4.72355 4.74923 4.82664 4.87121 4.95622 4.99904 5.08286 5.09455 5.21764 5.27050 5.31006 5.33396 5.54037 5.70017 5.72697 5.85213 5.93334 5.95242 6.07489 6.24576 6.56708 7.02794 7.12149 7.36308 7.47471 7.55163 7.65235 7.74961 8.06020 8.61139 9.17805 9.53936 10.05521 10.75913 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.041356 B = 0.001438 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.889783 B =19465.180731 C =20009.354380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.228 3.772 3 N -0.493 5.493 4 C 0.045 3.955 5 C -0.092 4.092 6 C 0.596 3.404 7 O -0.549 6.549 8 N -0.709 5.709 9 C 0.092 3.908 10 C 0.098 3.902 11 H 0.118 0.882 12 O -0.552 6.552 13 C 0.031 3.969 14 N -0.663 5.663 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.581 6.581 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 N -0.424 5.424 28 C 0.063 3.937 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.181 0.819 33 H 0.409 0.591 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.374 0.626 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.357 0.643 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.159 -3.308 -0.261 32.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 N -0.212 5.212 4 C -0.110 4.110 5 C -0.208 4.208 6 C 0.383 3.617 7 O -0.428 6.428 8 N -0.360 5.360 9 C -0.032 4.032 10 C 0.038 3.962 11 H 0.136 0.864 12 O -0.357 6.357 13 C -0.100 4.100 14 N -0.297 5.297 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.465 6.465 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.105 5.105 28 C -0.079 4.079 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.198 0.802 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.221 0.779 37 H 0.050 0.950 38 H 0.101 0.899 39 H 0.177 0.823 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -32.427 -2.252 -1.350 32.533 hybrid contribution 1.282 -1.536 1.241 2.355 sum -31.145 -3.787 -0.109 31.375 Atomic orbital electron populations 1.20296 0.84264 1.04460 1.04013 1.23492 0.96007 0.81122 1.02796 1.70139 1.02150 1.28050 1.20892 1.22705 0.95309 0.91214 1.01766 1.20659 0.85288 0.94897 1.19991 1.16739 0.82136 0.86492 0.76302 1.90782 1.86830 1.14267 1.50941 1.45474 1.05085 1.11103 1.74362 1.22116 0.83980 0.93776 1.03359 1.22240 0.91021 0.93806 0.89114 0.86447 1.86669 1.96571 1.37061 1.15381 1.22523 0.90811 0.94808 1.01831 1.59957 0.99264 1.21482 1.49015 1.21684 0.90106 0.95087 1.01338 1.19787 0.84029 0.89064 0.84601 1.90536 1.85567 1.15215 1.55229 1.41852 1.04354 1.09721 1.64083 1.19666 0.83658 0.92325 1.47355 0.87943 1.25258 0.99062 0.96269 0.97287 1.69606 1.23885 1.10423 1.50452 0.85912 0.79767 0.79397 0.79109 1.19906 1.20985 1.19868 1.45080 1.05099 1.08383 1.51947 1.22334 1.02511 0.78872 1.04193 0.89603 0.88630 0.90501 0.80193 0.75506 0.89912 0.90863 0.77908 0.94976 0.89852 0.82257 0.93908 0.89607 0.77474 0.91829 0.90132 0.89453 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.18 36.01 0.37 0.08 16 2 C 0.23 1.91 7.88 -155.62 -1.23 0.68 16 3 N -0.49 -5.19 11.20 -10.58 -0.12 -5.31 16 4 C 0.05 0.42 11.37 -17.47 -0.20 0.22 16 5 C -0.09 -0.90 6.91 -82.14 -0.57 -1.47 16 6 C 0.60 6.14 7.78 -12.81 -0.10 6.04 16 7 O -0.55 -6.99 14.81 5.21 0.08 -6.91 16 8 N -0.71 -5.78 5.49 -61.59 -0.34 -6.12 16 9 C 0.09 0.73 5.32 -4.05 -0.02 0.71 16 10 C 0.10 0.86 3.27 -26.73 -0.09 0.78 16 11 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 12 O -0.55 -5.21 12.62 -35.23 -0.44 -5.66 16 13 C 0.03 0.33 5.39 -3.83 -0.02 0.30 16 14 N -0.66 -10.22 6.12 -115.06 -0.70 -10.93 16 15 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 16 C 0.44 10.36 7.82 -10.98 -0.09 10.27 16 17 O -0.58 -15.87 15.78 5.54 0.09 -15.78 16 18 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 19 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 23 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 N -0.42 -3.65 3.17 -117.27 -0.37 -4.02 16 28 C 0.06 0.36 10.57 59.85 0.63 0.99 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.16 7.09 -51.93 -0.37 -0.21 16 32 H 0.18 1.21 7.46 -52.49 -0.39 0.82 16 33 H 0.41 2.78 7.42 -40.82 -0.30 2.48 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.37 2.44 9.05 45.56 0.41 2.85 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.36 5.87 7.82 -39.30 -0.31 5.56 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 45 H 0.09 0.25 7.11 -51.93 -0.37 -0.12 16 46 H 0.11 0.82 6.24 -51.93 -0.32 0.49 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -36.69 393.21 -7.54 -44.22 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.71 Total: 15.20 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: -1.58 Total: 11.42 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.87 Total: -64.46 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.28 Total: -28.35 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.69 -7.54 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716098868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.116 kcal (2) G-P(sol) polarization free energy of solvation -36.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds