Wall clock time and date at job start Tue Mar 31 2020 22:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30857 * 125.41608 * 2 1 4 4 C 1.33325 * 109.68247 * 179.74277 * 3 2 1 5 5 C 1.36666 * 107.78233 * 0.38031 * 4 3 2 6 6 C 1.46769 * 126.84346 * 179.89752 * 5 4 3 7 7 O 1.21679 * 120.00046 * 185.01016 * 6 5 4 8 8 N 1.34780 * 119.99760 * 5.01554 * 6 5 4 9 9 C 1.46494 * 119.99720 * 174.64792 * 8 6 5 10 10 C 1.52998 * 109.47117 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47329 * 305.00508 * 10 9 8 12 12 O 1.42901 * 109.47090 * 65.00250 * 10 9 8 13 13 C 1.52998 * 109.47489 * 184.99699 * 10 9 8 14 14 N 1.46898 * 109.47397 * 180.02562 * 13 10 9 15 15 C 1.46902 * 110.99999 * 180.02562 * 14 13 10 16 16 C 1.50705 * 109.47101 * 179.97438 * 15 14 13 17 17 O 1.21296 * 119.99867 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99838 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99772 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00089 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00027 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00417 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46987 * 60.00076 * 23 21 19 25 25 H 1.48496 * 109.47591 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47117 * 300.00723 * 23 21 19 27 27 N 1.34490 * 125.41426 * 179.97438 * 2 1 3 28 28 C 1.46499 * 126.47568 * 0.02562 * 27 2 1 29 29 H 1.08996 * 109.46842 * 270.03129 * 1 2 3 30 30 H 1.09000 * 109.46581 * 30.02310 * 1 2 3 31 31 H 1.08992 * 109.47038 * 150.02319 * 1 2 3 32 32 H 1.07992 * 126.11048 * 180.27045 * 4 3 2 33 33 H 0.96994 * 119.99823 * 354.64662 * 8 6 5 34 34 H 1.09004 * 109.47591 * 60.00103 * 9 8 6 35 35 H 1.08998 * 109.47323 * 299.99814 * 9 8 6 36 36 H 0.96701 * 114.00224 * 59.99378 * 12 10 9 37 37 H 1.09000 * 109.47495 * 300.00707 * 13 10 9 38 38 H 1.09007 * 109.47167 * 60.00184 * 13 10 9 39 39 H 1.00890 * 111.00059 * 56.04547 * 14 13 10 40 40 H 1.08992 * 109.47326 * 299.99915 * 15 14 13 41 41 H 1.08998 * 109.46974 * 60.00044 * 15 14 13 42 42 H 0.97000 * 120.00428 * 0.02562 * 18 16 15 43 43 H 0.97001 * 119.99856 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.46649 * 272.99572 * 28 27 2 45 45 H 1.08998 * 109.47310 * 32.99452 * 28 27 2 46 46 H 1.08999 * 109.47153 * 152.99890 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 0.0056 5 6 3.5976 -0.6609 0.0007 6 6 4.8028 -1.4984 0.0020 7 8 4.7038 -2.7072 -0.0949 8 7 6.0194 -0.9284 0.1107 9 6 7.2137 -1.7683 0.2301 10 6 8.4540 -0.8789 0.3374 11 1 8.4859 -0.1959 -0.5116 12 8 8.3975 -0.1272 1.5514 13 6 9.7099 -1.7527 0.3366 14 7 10.9006 -0.8987 0.4403 15 6 12.1284 -1.7054 0.4419 16 6 13.3261 -0.7970 0.5486 17 8 13.1721 0.4042 0.6171 18 7 14.5684 -1.3194 0.5690 19 6 15.6580 -0.4929 0.6655 20 1 15.5209 0.5766 0.7257 21 6 16.9387 -1.0314 0.6871 22 7 17.1055 -2.3329 0.6144 23 14 18.4234 0.0945 0.8193 24 1 18.3415 0.8757 2.0797 25 1 19.6644 -0.7209 0.8216 26 1 18.4444 1.0240 -0.3386 27 7 2.2864 -1.0961 0.0005 28 6 1.8310 -2.4885 0.0006 29 1 -0.3633 0.0006 1.0276 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5134 32 1 4.3978 1.3721 0.0111 33 1 6.1040 0.0379 0.1098 34 1 7.2992 -2.4056 -0.6501 35 1 7.1334 -2.3895 1.1221 36 1 8.3668 -0.6716 2.3500 37 1 9.6779 -2.4356 1.1856 38 1 9.7530 -2.3261 -0.5894 39 1 10.8533 -0.3101 1.2583 40 1 12.1132 -2.3885 1.2911 41 1 12.1883 -2.2777 -0.4838 42 1 14.6916 -2.2800 0.5146 43 1 17.9996 -2.7089 0.6298 44 1 1.6667 -2.8169 1.0269 45 1 0.8991 -2.5660 -0.5593 46 1 2.5885 -3.1185 -0.4656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716098868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:32 Heat of formation + Delta-G solvation = -94.654585 kcal Electronic energy + Delta-G solvation = -27904.092180 eV Core-core repulsion = 23635.370614 eV Total energy + Delta-G solvation = -4268.721565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.32556 -40.62532 -40.14668 -38.94340 -36.32653 -35.80377 -35.48557 -34.87964 -33.26286 -32.99019 -31.38803 -29.27464 -28.26777 -27.66400 -26.41102 -24.73697 -23.62954 -22.74865 -21.52458 -21.10104 -20.81198 -19.90949 -19.00837 -18.20929 -17.51756 -17.28379 -17.25330 -17.15450 -16.75883 -16.36940 -16.22258 -16.01643 -15.65073 -15.39952 -15.17112 -14.92862 -14.75999 -14.34663 -14.20847 -14.14195 -14.03085 -13.77970 -13.57617 -13.42774 -13.28179 -13.15171 -13.12393 -12.92113 -12.68551 -12.42835 -12.12046 -11.98095 -11.57026 -11.49772 -11.17496 -10.96811 -10.78752 -10.32710 -10.28672 -10.01161 -9.51700 -9.31049 -8.46219 -5.95069 0.19373 1.38918 1.40437 1.42473 1.53282 1.70586 2.06090 2.18567 2.22751 2.30698 2.90416 3.21157 3.36919 3.44176 3.50325 3.62914 3.84628 3.88956 3.92105 4.01049 4.12859 4.27891 4.32337 4.33876 4.44680 4.51500 4.53269 4.57383 4.66293 4.70391 4.73110 4.76821 5.03345 5.08690 5.13794 5.25129 5.41176 5.43990 5.87629 6.02656 6.09695 6.33856 6.42179 6.60766 6.79008 6.83706 7.03070 7.13123 7.56815 8.12472 8.70837 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.041356 B = 0.001438 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.889783 B =19465.180731 C =20009.354380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.229 3.771 3 N -0.530 5.530 4 C 0.041 3.959 5 C -0.114 4.114 6 C 0.596 3.404 7 O -0.578 6.578 8 N -0.699 5.699 9 C 0.100 3.900 10 C 0.112 3.888 11 H 0.108 0.892 12 O -0.566 6.566 13 C 0.032 3.968 14 N -0.681 5.681 15 C 0.065 3.935 16 C 0.435 3.565 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.273 1.273 27 N -0.430 5.430 28 C 0.061 3.939 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.197 0.803 33 H 0.416 0.584 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.387 0.613 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.349 0.651 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.090 0.910 45 H 0.119 0.881 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.353 -4.117 -0.138 33.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.033 4.033 3 N -0.249 5.249 4 C -0.113 4.113 5 C -0.231 4.231 6 C 0.384 3.616 7 O -0.460 6.460 8 N -0.351 5.351 9 C -0.024 4.024 10 C 0.052 3.948 11 H 0.126 0.874 12 O -0.373 6.373 13 C -0.098 4.098 14 N -0.314 5.314 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.198 1.198 27 N -0.111 5.111 28 C -0.080 4.080 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.214 0.786 33 H 0.253 0.747 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.236 0.764 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.168 0.832 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.137 0.863 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -33.630 -3.093 -1.225 33.794 hybrid contribution 1.560 -1.270 1.212 2.349 sum -32.070 -4.364 -0.013 32.365 Atomic orbital electron populations 1.20510 0.81346 1.05819 1.05298 1.24288 0.97560 0.80592 1.00892 1.70154 1.02789 1.29406 1.22571 1.23054 0.95747 0.91482 1.01063 1.20717 0.85842 0.95065 1.21442 1.16850 0.82701 0.86154 0.75923 1.90763 1.87263 1.15371 1.52614 1.45418 1.04677 1.11518 1.73455 1.22024 0.83310 0.93424 1.03629 1.22021 0.90670 0.93308 0.88782 0.87393 1.86647 1.96537 1.37957 1.16139 1.22623 0.89242 0.94732 1.03195 1.59933 1.00135 1.22488 1.48849 1.21541 0.87938 0.93935 1.03295 1.20942 0.85102 0.89423 0.82237 1.90502 1.86388 1.17576 1.56564 1.41924 1.04671 1.09667 1.64749 1.19643 0.85403 0.91821 1.49752 0.90371 1.26019 1.01075 0.97765 0.96245 1.69664 1.24818 1.11432 1.50145 0.85000 0.76742 0.77730 0.78931 1.19687 1.19441 1.19794 1.45322 1.04745 1.09403 1.51604 1.22483 1.03147 0.77247 1.05158 0.88205 0.88329 0.88067 0.78599 0.74712 0.89916 0.90293 0.76395 0.92937 0.88815 0.83186 0.91414 0.87694 0.76939 0.91291 0.89193 0.86295 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.18 71.24 0.73 0.30 16 2 C 0.23 3.58 7.88 138.20 1.09 4.66 16 3 N -0.53 -10.89 11.20 -187.39 -2.10 -12.99 16 4 C 0.04 0.77 11.37 84.10 0.96 1.73 16 5 C -0.11 -2.21 6.91 40.01 0.28 -1.94 16 6 C 0.60 12.10 7.78 86.47 0.67 12.77 16 7 O -0.58 -14.66 14.81 -4.28 -0.06 -14.73 16 8 N -0.70 -10.89 5.49 -467.01 -2.56 -13.46 16 9 C 0.10 1.45 5.32 86.38 0.46 1.91 16 10 C 0.11 1.82 3.27 30.59 0.10 1.92 16 11 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 12 O -0.57 -9.97 12.62 -148.98 -1.88 -11.85 16 13 C 0.03 0.60 5.39 86.30 0.47 1.06 16 14 N -0.68 -20.10 6.12 -517.93 -3.17 -23.27 16 15 C 0.07 2.14 6.17 85.56 0.53 2.67 16 16 C 0.44 20.62 7.82 87.66 0.69 21.31 16 17 O -0.62 -34.80 15.78 -3.08 -0.05 -34.85 16 18 N -0.57 -29.31 5.29 -306.98 -1.62 -30.94 16 19 C -0.34 -19.19 9.68 84.04 0.81 -18.37 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 22 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 23 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 N -0.43 -7.04 3.17 -524.93 -1.67 -8.70 16 28 C 0.06 0.62 10.57 127.77 1.35 1.98 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.09 7.09 -2.39 -0.02 0.08 16 32 H 0.20 2.59 7.46 -2.91 -0.02 2.57 16 33 H 0.42 5.36 7.42 -92.71 -0.69 4.67 16 34 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.39 4.42 9.05 -74.06 -0.67 3.75 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.35 11.25 7.82 -89.70 -0.70 10.55 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 43 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.12 0.40 7.11 -2.39 -0.02 0.38 16 46 H 0.09 1.32 6.24 -2.39 -0.01 1.31 16 Total: -1.00 -80.50 393.21 -3.94 -84.44 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -1.73 Total: 40.71 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 8.59 Total: 29.86 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -10.84 Total: -138.55 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: -1.99 Total: -61.43 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -80.50 -3.94 -84.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716098868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.211 kcal (2) G-P(sol) polarization free energy of solvation -80.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds