Wall clock time and date at job start Tue Mar 31 2020 22:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29950 * 125.30485 * 2 1 4 4 O 1.41875 * 107.41528 * 180.02562 * 3 2 1 5 5 N 1.41884 * 106.38749 * 359.78523 * 4 3 2 6 6 C 1.29955 * 107.41073 * 0.36278 * 5 4 3 7 7 C 1.50696 * 125.30422 * 179.89359 * 6 5 4 8 8 C 1.50702 * 109.47115 * 269.69749 * 7 6 5 9 9 O 1.21281 * 120.00320 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00102 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99978 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47191 * 322.99277 * 11 10 8 13 13 C 1.53003 * 109.46997 * 82.99613 * 11 10 8 14 14 C 1.53004 * 109.46902 * 202.99064 * 11 10 8 15 15 N 1.46897 * 109.46824 * 55.16707 * 14 11 10 16 16 C 1.46905 * 110.99883 * 198.92517 * 15 14 11 17 17 C 1.46901 * 111.00234 * 74.97327 * 15 14 11 18 18 C 1.50697 * 109.47217 * 189.99740 * 17 15 14 19 19 O 1.21294 * 120.00061 * 359.97438 * 18 17 15 20 20 N 1.34772 * 120.00384 * 179.97438 * 18 17 15 21 21 C 1.37098 * 120.00570 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99467 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00288 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00175 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99948 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47188 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46794 * 120.00211 * 25 23 21 28 28 H 1.48497 * 109.47342 * 239.99891 * 25 23 21 29 29 H 1.09004 * 109.46925 * 269.99922 * 1 2 3 30 30 H 1.09000 * 109.47291 * 29.99602 * 1 2 3 31 31 H 1.08998 * 109.47615 * 149.99925 * 1 2 3 32 32 H 1.09000 * 109.47211 * 29.69380 * 7 6 5 33 33 H 1.08995 * 109.47702 * 149.69766 * 7 6 5 34 34 H 0.97003 * 120.00019 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.47539 * 59.99359 * 13 11 10 36 36 H 1.08998 * 109.46963 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.46616 * 299.99181 * 13 11 10 38 38 H 1.09004 * 109.47031 * 175.16212 * 14 11 10 39 39 H 1.09001 * 109.47392 * 295.16466 * 14 11 10 40 40 H 1.09000 * 109.46846 * 54.12033 * 16 15 14 41 41 H 1.09002 * 109.47341 * 174.12035 * 16 15 14 42 42 H 1.08996 * 109.46983 * 294.12164 * 16 15 14 43 43 H 1.08998 * 109.46992 * 309.99779 * 17 15 14 44 44 H 1.08998 * 109.47110 * 69.99873 * 17 15 14 45 45 H 0.97005 * 120.00061 * 359.97438 * 20 18 17 46 46 H 0.96996 * 120.00161 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7936 0.0041 6 6 2.3212 -1.1499 -0.0006 7 6 1.8208 -2.5713 -0.0004 8 6 1.6530 -3.0451 -1.4211 9 8 1.9136 -2.3015 -2.3431 10 7 1.2133 -4.2951 -1.6672 11 6 1.0497 -4.7554 -3.0484 12 1 0.6818 -3.9345 -3.6638 13 6 2.3984 -5.2340 -3.5896 14 6 0.0465 -5.9102 -3.0856 15 7 -1.2128 -5.4850 -2.4601 16 6 -2.0248 -6.6455 -2.0699 17 6 -1.9662 -4.5902 -3.3486 18 6 -3.1184 -3.9829 -2.5905 19 8 -3.2949 -4.2680 -1.4249 20 7 -3.9528 -3.1231 -3.2077 21 6 -5.0007 -2.5703 -2.5180 22 1 -5.1578 -2.8241 -1.4800 23 6 -5.8606 -1.6834 -3.1542 24 7 -5.6697 -1.3750 -4.4173 25 14 -7.2889 -0.9308 -2.2144 26 1 -7.2845 -1.4370 -0.8184 27 1 -7.1507 0.5478 -2.2048 28 1 -8.5664 -1.3042 -2.8729 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 2.5400 -3.2096 0.5129 33 1 0.8610 -2.6186 0.5140 34 1 1.0045 -4.8898 -0.9298 35 1 2.7663 -6.0549 -2.9742 36 1 2.2767 -5.5760 -4.6174 37 1 3.1130 -4.4113 -3.5631 38 1 -0.1403 -6.1959 -4.1208 39 1 0.4531 -6.7624 -2.5412 40 1 -1.4317 -7.3086 -1.4401 41 1 -2.9008 -6.3065 -1.5169 42 1 -2.3442 -7.1822 -2.9632 43 1 -1.3097 -3.7977 -3.7078 44 1 -2.3484 -5.1578 -4.1970 45 1 -3.8115 -2.8948 -4.1399 46 1 -6.2702 -0.7562 -4.8615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716502676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:35 Heat of formation + Delta-G solvation = 23.424786 kcal Electronic energy + Delta-G solvation = -30122.663534 eV Core-core repulsion = 25859.062274 eV Total energy + Delta-G solvation = -4263.601260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61599 -39.91621 -38.67619 -37.04291 -34.91455 -34.56941 -33.83056 -33.49103 -31.52109 -31.29282 -29.21446 -28.69161 -28.12207 -27.03203 -24.76412 -23.29275 -22.42876 -21.49213 -20.70448 -20.32961 -19.18904 -17.90231 -17.53821 -17.08887 -16.28271 -16.22146 -15.86413 -15.58358 -15.24909 -14.82513 -14.54759 -14.37864 -14.23411 -14.01920 -13.87200 -13.64380 -13.50804 -13.43459 -13.11078 -12.93595 -12.70333 -12.30066 -12.22138 -12.11563 -11.91731 -11.84260 -11.69001 -11.53910 -11.49559 -11.30327 -11.10715 -11.02916 -10.72030 -10.65132 -10.38604 -10.27292 -9.96759 -9.53560 -9.10974 -8.53829 -8.05144 -7.95126 -6.46174 -3.87407 0.45674 1.82531 2.50448 2.54742 2.98900 3.12384 3.17140 3.23761 3.29528 3.75723 3.84023 3.89374 4.17675 4.38090 4.60421 4.68784 4.71046 4.95433 4.98887 5.05763 5.13675 5.16473 5.22714 5.26283 5.32638 5.33984 5.47659 5.54042 5.56374 5.58583 5.67617 5.82738 5.88910 5.89719 5.93581 6.03924 6.21550 6.39847 6.46975 6.84801 7.13170 7.24112 7.43255 7.50505 8.01170 8.12806 8.56238 9.13193 9.49511 10.00394 10.71453 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008339 B = 0.003737 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.753297 B = 7491.785933 C =10032.994531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.092 3.908 3 N -0.280 5.280 4 O 0.022 5.978 5 N -0.269 5.269 6 C 0.101 3.899 7 C -0.082 4.082 8 C 0.522 3.478 9 O -0.537 6.537 10 N -0.699 5.699 11 C 0.148 3.852 12 H 0.088 0.912 13 C -0.162 4.162 14 C 0.042 3.958 15 N -0.515 5.515 16 C 0.022 3.978 17 C 0.043 3.957 18 C 0.445 3.555 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.133 0.867 34 H 0.406 0.594 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.015 0.985 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.156 -8.266 5.076 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 N -0.026 5.026 4 O -0.119 6.119 5 N -0.012 5.012 6 C -0.082 4.082 7 C -0.123 4.123 8 C 0.306 3.694 9 O -0.413 6.413 10 N -0.350 5.350 11 C 0.043 3.957 12 H 0.106 0.894 13 C -0.221 4.221 14 C -0.087 4.087 15 N -0.239 5.239 16 C -0.125 4.125 17 C -0.089 4.089 18 C 0.230 3.770 19 O -0.464 6.464 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.241 0.759 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.033 0.967 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.417 -6.696 5.500 16.821 hybrid contribution -1.543 -0.581 -0.757 1.815 sum 12.873 -7.278 4.743 15.530 Atomic orbital electron populations 1.20647 0.83660 1.06275 1.04884 1.24609 1.00527 0.88666 0.95211 1.79939 0.88838 1.19505 1.14343 1.93365 1.20558 1.13216 1.84731 1.79846 1.17408 0.91595 1.12326 1.23763 0.89996 0.97783 0.96691 1.20363 1.05367 0.89021 0.97595 1.19934 0.77382 0.82140 0.89925 1.90770 1.50158 1.54572 1.45842 1.45644 1.66435 1.13813 1.09070 1.20978 0.94530 0.97141 0.83095 0.89421 1.22152 0.97157 1.01670 1.01137 1.22501 0.90799 0.96602 0.98807 1.61582 1.04144 1.17182 1.40987 1.22560 0.99567 0.91056 0.99352 1.21941 0.96020 0.96923 0.93975 1.19663 0.85014 0.84087 0.88212 1.90463 1.74884 1.64202 1.16844 1.41888 1.25357 1.39256 1.13446 1.19716 1.03669 1.22267 0.97216 0.87849 1.25260 0.99318 0.97433 0.95842 1.69617 1.38971 1.35358 1.10142 0.85832 0.80411 0.78669 0.79623 1.19209 1.20715 1.20787 0.88314 0.88849 0.88307 0.85904 0.84863 0.75902 0.92379 0.91577 0.91806 0.93201 0.90200 0.92309 0.88364 0.96680 0.89560 0.93470 0.77542 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.05 36.00 0.36 -0.67 16 2 C 0.09 1.20 7.19 -82.38 -0.59 0.61 16 3 N -0.28 -4.23 12.98 33.74 0.44 -3.80 16 4 O 0.02 0.35 13.71 12.02 0.16 0.51 16 5 N -0.27 -3.91 12.98 33.74 0.44 -3.47 16 6 C 0.10 1.27 5.68 -82.38 -0.47 0.80 16 7 C -0.08 -0.74 5.87 -29.04 -0.17 -0.91 16 8 C 0.52 6.24 7.76 -10.98 -0.09 6.16 16 9 O -0.54 -8.77 15.72 5.56 0.09 -8.68 16 10 N -0.70 -6.99 4.83 -53.80 -0.26 -7.25 16 11 C 0.15 1.54 2.55 -67.93 -0.17 1.37 16 12 H 0.09 1.15 6.41 -51.93 -0.33 0.82 16 13 C -0.16 -1.44 9.46 37.16 0.35 -1.09 16 14 C 0.04 0.41 4.54 -3.82 -0.02 0.40 16 15 N -0.52 -6.95 4.16 -244.37 -1.02 -7.97 16 16 C 0.02 0.30 9.17 60.07 0.55 0.85 16 17 C 0.04 0.69 5.28 -4.98 -0.03 0.66 16 18 C 0.44 9.61 7.52 -10.99 -0.08 9.52 16 19 O -0.58 -13.99 13.88 5.55 0.08 -13.91 16 20 N -0.56 -13.49 5.29 -10.97 -0.06 -13.55 16 21 C -0.30 -7.91 9.68 -14.93 -0.14 -8.05 16 22 H 0.10 2.86 7.16 -52.49 -0.38 2.48 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -23.84 13.05 55.50 0.72 -23.11 16 25 Si 0.93 20.27 29.55 -169.99 -5.02 15.25 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.09 7.77 -51.93 -0.40 0.69 16 32 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.13 0.88 7.78 -51.93 -0.40 0.48 16 34 H 0.41 3.22 8.58 -40.82 -0.35 2.87 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 38 H 0.05 0.47 8.01 -51.93 -0.42 0.06 16 39 H 0.08 0.64 7.81 -51.93 -0.41 0.23 16 40 H 0.06 0.63 7.94 -51.93 -0.41 0.22 16 41 H 0.10 1.69 5.92 -51.93 -0.31 1.38 16 42 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 43 H 0.09 1.35 6.66 -51.93 -0.35 1.01 16 44 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 45 H 0.39 9.17 7.90 -40.82 -0.32 8.84 16 46 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -33.71 393.04 -5.69 -39.40 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.59 Total: 10.50 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.59 Total: 10.16 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.27 Total: -59.15 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.33 Total: -22.08 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.71 -5.69 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716502676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.824 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds