Wall clock time and date at job start Tue Mar 31 2020 22:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29950 * 125.30485 * 2 1 4 4 O 1.41875 * 107.41528 * 180.02562 * 3 2 1 5 5 N 1.41884 * 106.38749 * 359.78523 * 4 3 2 6 6 C 1.29955 * 107.41073 * 0.36278 * 5 4 3 7 7 C 1.50696 * 125.30422 * 179.89359 * 6 5 4 8 8 C 1.50702 * 109.47115 * 269.69749 * 7 6 5 9 9 O 1.21281 * 120.00320 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00102 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99978 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47191 * 322.99277 * 11 10 8 13 13 C 1.53003 * 109.46997 * 82.99613 * 11 10 8 14 14 C 1.53004 * 109.46902 * 202.99064 * 11 10 8 15 15 N 1.46897 * 109.46824 * 55.16707 * 14 11 10 16 16 C 1.46905 * 110.99883 * 198.92517 * 15 14 11 17 17 C 1.46901 * 111.00234 * 74.97327 * 15 14 11 18 18 C 1.50697 * 109.47217 * 189.99740 * 17 15 14 19 19 O 1.21294 * 120.00061 * 359.97438 * 18 17 15 20 20 N 1.34772 * 120.00384 * 179.97438 * 18 17 15 21 21 C 1.37098 * 120.00570 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99467 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00288 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00175 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99948 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47188 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46794 * 120.00211 * 25 23 21 28 28 H 1.48497 * 109.47342 * 239.99891 * 25 23 21 29 29 H 1.09004 * 109.46925 * 269.99922 * 1 2 3 30 30 H 1.09000 * 109.47291 * 29.99602 * 1 2 3 31 31 H 1.08998 * 109.47615 * 149.99925 * 1 2 3 32 32 H 1.09000 * 109.47211 * 29.69380 * 7 6 5 33 33 H 1.08995 * 109.47702 * 149.69766 * 7 6 5 34 34 H 0.97003 * 120.00019 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.47539 * 59.99359 * 13 11 10 36 36 H 1.08998 * 109.46963 * 180.02562 * 13 11 10 37 37 H 1.08999 * 109.46616 * 299.99181 * 13 11 10 38 38 H 1.09004 * 109.47031 * 175.16212 * 14 11 10 39 39 H 1.09001 * 109.47392 * 295.16466 * 14 11 10 40 40 H 1.09000 * 109.46846 * 54.12033 * 16 15 14 41 41 H 1.09002 * 109.47341 * 174.12035 * 16 15 14 42 42 H 1.08996 * 109.46983 * 294.12164 * 16 15 14 43 43 H 1.08998 * 109.46992 * 309.99779 * 17 15 14 44 44 H 1.08998 * 109.47110 * 69.99873 * 17 15 14 45 45 H 0.97005 * 120.00061 * 359.97438 * 20 18 17 46 46 H 0.96996 * 120.00161 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7936 0.0041 6 6 2.3212 -1.1499 -0.0006 7 6 1.8208 -2.5713 -0.0004 8 6 1.6530 -3.0451 -1.4211 9 8 1.9136 -2.3015 -2.3431 10 7 1.2133 -4.2951 -1.6672 11 6 1.0497 -4.7554 -3.0484 12 1 0.6818 -3.9345 -3.6638 13 6 2.3984 -5.2340 -3.5896 14 6 0.0465 -5.9102 -3.0856 15 7 -1.2128 -5.4850 -2.4601 16 6 -2.0248 -6.6455 -2.0699 17 6 -1.9662 -4.5902 -3.3486 18 6 -3.1184 -3.9829 -2.5905 19 8 -3.2949 -4.2680 -1.4249 20 7 -3.9528 -3.1231 -3.2077 21 6 -5.0007 -2.5703 -2.5180 22 1 -5.1578 -2.8241 -1.4800 23 6 -5.8606 -1.6834 -3.1542 24 7 -5.6697 -1.3750 -4.4173 25 14 -7.2889 -0.9308 -2.2144 26 1 -7.2845 -1.4370 -0.8184 27 1 -7.1507 0.5478 -2.2048 28 1 -8.5664 -1.3042 -2.8729 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 2.5400 -3.2096 0.5129 33 1 0.8610 -2.6186 0.5140 34 1 1.0045 -4.8898 -0.9298 35 1 2.7663 -6.0549 -2.9742 36 1 2.2767 -5.5760 -4.6174 37 1 3.1130 -4.4113 -3.5631 38 1 -0.1403 -6.1959 -4.1208 39 1 0.4531 -6.7624 -2.5412 40 1 -1.4317 -7.3086 -1.4401 41 1 -2.9008 -6.3065 -1.5169 42 1 -2.3442 -7.1822 -2.9632 43 1 -1.3097 -3.7977 -3.7078 44 1 -2.3484 -5.1578 -4.1970 45 1 -3.8115 -2.8948 -4.1399 46 1 -6.2702 -0.7562 -4.8615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716502676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:34 Heat of formation + Delta-G solvation = -3.693749 kcal Electronic energy + Delta-G solvation = -30123.839482 eV Core-core repulsion = 25859.062274 eV Total energy + Delta-G solvation = -4264.777208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.64727 -40.89814 -40.20014 -38.26652 -36.12331 -35.66779 -35.46314 -34.50998 -33.20815 -32.42240 -30.11954 -29.63380 -29.50287 -27.91692 -26.54786 -24.29469 -23.51041 -22.49611 -21.69929 -21.27630 -20.78723 -19.78365 -18.47379 -18.07872 -17.77358 -17.19638 -16.92323 -16.63709 -16.55210 -16.33312 -15.90374 -15.42830 -15.37021 -15.27309 -15.14454 -14.90601 -14.69412 -14.31112 -14.14495 -13.92430 -13.67164 -13.52126 -13.35778 -13.13760 -13.03213 -12.91326 -12.86891 -12.82062 -12.63514 -12.56645 -12.39804 -12.30322 -12.11624 -12.08163 -11.69913 -11.67037 -11.38990 -10.95258 -10.19061 -9.99375 -9.93797 -9.16251 -8.41477 -5.89313 -0.60087 0.83542 1.39567 1.45301 1.47311 1.58449 1.61376 1.99666 2.12136 2.28248 2.32879 2.79001 2.84468 3.26462 3.43484 3.47511 3.83182 3.87614 3.89757 4.12509 4.18507 4.24657 4.34157 4.40158 4.45808 4.49683 4.54313 4.57191 4.63163 4.65764 4.73096 4.77907 4.83009 4.87157 5.03537 5.10015 5.30850 5.33451 5.46732 5.58343 5.78883 5.92826 6.12112 6.25850 6.61496 6.65802 7.19055 7.29514 7.63437 8.17933 8.76302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008339 B = 0.003737 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.753297 B = 7491.785933 C =10032.994531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.097 3.903 3 N -0.305 5.305 4 O -0.012 6.012 5 N -0.286 5.286 6 C 0.110 3.890 7 C -0.078 4.078 8 C 0.518 3.482 9 O -0.588 6.588 10 N -0.687 5.687 11 C 0.147 3.853 12 H 0.057 0.943 13 C -0.153 4.153 14 C 0.049 3.951 15 N -0.523 5.523 16 C 0.027 3.973 17 C 0.055 3.945 18 C 0.447 3.553 19 O -0.604 6.604 20 N -0.579 5.579 21 C -0.323 4.323 22 H 0.084 0.916 23 C -0.015 4.015 24 N -0.925 5.925 25 Si 0.989 3.011 26 H -0.268 1.268 27 H -0.275 1.275 28 H -0.276 1.276 29 H 0.129 0.871 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.419 0.581 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.023 0.977 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.392 0.608 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.165 -10.515 5.818 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 N -0.054 5.054 4 O -0.147 6.147 5 N -0.031 5.031 6 C -0.075 4.075 7 C -0.118 4.118 8 C 0.303 3.697 9 O -0.469 6.469 10 N -0.338 5.338 11 C 0.041 3.959 12 H 0.075 0.925 13 C -0.212 4.212 14 C -0.079 4.079 15 N -0.247 5.247 16 C -0.121 4.121 17 C -0.076 4.076 18 C 0.235 3.765 19 O -0.489 6.489 20 N -0.217 5.217 21 C -0.452 4.452 22 H 0.102 0.898 23 C -0.214 4.214 24 N -0.567 5.567 25 Si 0.813 3.187 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.201 1.201 29 H 0.147 0.853 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.257 0.743 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.225 0.775 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.463 -8.973 6.258 18.135 hybrid contribution -1.542 -0.018 -0.978 1.826 sum 12.921 -8.992 5.280 16.604 Atomic orbital electron populations 1.20774 0.81963 1.05865 1.06660 1.25081 1.01486 0.88523 0.93492 1.79902 0.88831 1.20601 1.16056 1.93335 1.21282 1.14233 1.85821 1.79810 1.18638 0.90906 1.13792 1.24300 0.89278 0.99233 0.94646 1.20597 1.07774 0.87212 0.96260 1.20375 0.76610 0.82191 0.90477 1.90761 1.52542 1.55995 1.47592 1.45604 1.65263 1.13416 1.09524 1.20969 0.95596 0.96426 0.82882 0.92528 1.22061 0.95425 1.01402 1.02313 1.22560 0.88462 0.97014 0.99873 1.61518 1.04915 1.17296 1.40982 1.22460 0.98690 0.91179 0.99749 1.21753 0.94195 0.97717 0.93928 1.20627 0.85263 0.82529 0.88122 1.90449 1.75631 1.64560 1.18263 1.41996 1.25821 1.40379 1.13485 1.19688 1.05248 1.23502 0.96804 0.89761 1.25994 1.01309 0.97491 0.96632 1.69691 1.39912 1.35917 1.11159 0.84923 0.77538 0.77921 0.78331 1.19199 1.20082 1.20135 0.85300 0.89300 0.88555 0.82398 0.81901 0.74321 0.90128 0.90395 0.94197 0.91959 0.86990 0.89047 0.92529 0.95869 0.89037 0.91999 0.77514 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.92 10.05 71.24 0.72 -1.20 16 2 C 0.10 2.49 7.19 43.49 0.31 2.80 16 3 N -0.31 -9.46 12.98 -47.16 -0.61 -10.07 16 4 O -0.01 -0.40 13.71 70.15 0.96 0.56 16 5 N -0.29 -8.35 12.98 -47.16 -0.61 -8.97 16 6 C 0.11 2.65 5.68 43.49 0.25 2.90 16 7 C -0.08 -1.21 5.87 29.10 0.17 -1.04 16 8 C 0.52 11.61 7.76 87.66 0.68 12.29 16 9 O -0.59 -19.27 15.72 -3.03 -0.05 -19.32 16 10 N -0.69 -12.00 4.83 -442.51 -2.14 -14.14 16 11 C 0.15 2.72 2.55 44.99 0.11 2.84 16 12 H 0.06 1.44 6.41 -2.39 -0.02 1.43 16 13 C -0.15 -2.33 9.46 71.98 0.68 -1.65 16 14 C 0.05 0.78 4.54 86.31 0.39 1.17 16 15 N -0.52 -12.68 4.16 -927.04 -3.86 -16.54 16 16 C 0.03 0.65 9.17 127.69 1.17 1.82 16 17 C 0.06 1.71 5.28 85.56 0.45 2.16 16 18 C 0.45 19.27 7.52 87.66 0.66 19.93 16 19 O -0.60 -29.16 13.88 -3.07 -0.04 -29.20 16 20 N -0.58 -28.13 5.29 -306.99 -1.62 -29.75 16 21 C -0.32 -17.33 9.68 84.04 0.81 -16.52 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.02 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.93 -49.24 13.05 21.66 0.28 -48.96 16 25 Si 0.99 41.51 29.55 68.60 2.03 43.54 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 29 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.10 2.03 7.77 -2.39 -0.02 2.01 16 32 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.16 1.58 7.78 -2.39 -0.02 1.57 16 34 H 0.42 5.08 8.58 -92.71 -0.80 4.28 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.82 8.13 -2.39 -0.02 0.80 16 38 H 0.06 0.91 8.01 -2.38 -0.02 0.90 16 39 H 0.11 1.16 7.81 -2.39 -0.02 1.14 16 40 H 0.09 1.59 7.94 -2.39 -0.02 1.57 16 41 H 0.06 1.87 5.92 -2.39 -0.01 1.86 16 42 H 0.02 0.51 8.13 -2.39 -0.02 0.49 16 43 H 0.09 2.78 6.66 -2.39 -0.02 2.77 16 44 H 0.06 1.75 8.11 -2.39 -0.02 1.73 16 45 H 0.39 18.65 7.90 -92.70 -0.73 17.92 16 46 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -76.78 393.04 0.72 -76.05 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.49 Total: 31.63 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 6.88 Total: 25.17 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -8.56 Total: -128.43 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: 0.87 Total: -47.96 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -76.78 0.72 -76.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716502676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.357 kcal (2) G-P(sol) polarization free energy of solvation -76.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds