Wall clock time and date at job start Tue Mar 31 2020 22:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30493 * 125.65400 * 2 1 4 4 C 1.34132 * 109.25643 * 180.29457 * 3 2 1 5 5 C 1.34668 * 108.02185 * 359.72322 * 4 3 2 6 6 N 1.35049 * 125.64332 * 179.82838 * 2 1 3 7 7 C 1.46491 * 126.40241 * 359.97186 * 6 2 1 8 8 C 1.50702 * 109.46957 * 84.71414 * 7 6 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47492 * 295.00479 * 12 11 10 14 14 C 1.52999 * 109.47469 * 175.00230 * 12 11 10 15 15 O 1.42905 * 109.46727 * 305.00126 * 14 12 11 16 16 N 1.46904 * 109.46866 * 55.00128 * 12 11 10 17 17 C 1.46901 * 111.00212 * 205.00115 * 16 12 11 18 18 C 1.50695 * 109.47230 * 180.02562 * 17 16 12 19 19 O 1.21295 * 120.00087 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99821 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99649 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00170 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99832 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00269 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00297 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47189 * 59.99608 * 25 23 21 27 27 H 1.48493 * 109.47420 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46800 * 300.00101 * 25 23 21 29 29 H 1.09001 * 109.46773 * 270.17549 * 1 2 3 30 30 H 1.08998 * 109.46646 * 30.16986 * 1 2 3 31 31 H 1.08992 * 109.47415 * 150.17244 * 1 2 3 32 32 H 1.07996 * 125.98763 * 179.72768 * 4 3 2 33 33 H 1.07997 * 126.59179 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.47166 * 324.71679 * 7 6 2 35 35 H 1.08994 * 109.47507 * 204.71386 * 7 6 2 36 36 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 37 37 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 38 38 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 39 39 H 1.08996 * 109.46836 * 65.00096 * 14 12 11 40 40 H 1.08997 * 109.47032 * 185.00466 * 14 12 11 41 41 H 0.96705 * 113.99382 * 180.02562 * 15 14 12 42 42 H 1.00906 * 110.99887 * 81.04663 * 16 12 11 43 43 H 1.09003 * 109.46810 * 300.00070 * 17 16 12 44 44 H 1.08993 * 109.46680 * 59.99941 * 17 16 12 45 45 H 0.96996 * 120.00282 * 0.02562 * 20 18 17 46 46 H 0.96992 * 120.00545 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0603 0.0000 4 6 3.5544 0.6817 -0.0065 5 6 3.5926 -0.6645 -0.0045 6 7 2.2940 -1.0975 0.0033 7 6 1.8424 -2.4911 0.0080 8 6 1.5625 -2.9332 -1.4052 9 8 1.7247 -2.1604 -2.3258 10 7 1.1377 -4.1892 -1.6467 11 6 0.8713 -4.6210 -3.0211 12 6 0.4044 -6.0779 -3.0166 13 1 1.2137 -6.7178 -2.6651 14 6 0.0075 -6.4907 -4.4354 15 8 -0.9714 -5.5801 -4.9401 16 7 -0.7537 -6.2182 -2.1238 17 6 -0.8690 -7.5946 -1.6234 18 6 -2.0658 -7.6997 -0.7137 19 8 -2.7551 -6.7242 -0.5031 20 7 -2.3707 -8.8780 -0.1347 21 6 -3.4591 -8.9734 0.6934 22 1 -4.0724 -8.1046 0.8815 23 6 -3.7732 -10.1880 1.2907 24 7 -3.0273 -11.2454 1.0615 25 14 -5.2567 -10.3184 2.4185 26 1 -6.4849 -9.9614 1.6641 27 1 -5.3729 -11.7096 2.9247 28 1 -5.0911 -9.3876 3.5637 29 1 -0.3633 0.0031 1.0277 30 1 -0.3632 0.8885 -0.5165 31 1 -0.3634 -0.8914 -0.5111 32 1 4.4099 1.3408 -0.0123 33 1 4.4776 -1.2834 -0.0088 34 1 0.9326 -2.5762 0.6023 35 1 2.6186 -3.1231 0.4394 36 1 1.0082 -4.8074 -0.9105 37 1 0.0942 -3.9920 -3.4553 38 1 1.7826 -4.5328 -3.6126 39 1 0.8872 -6.4718 -5.0788 40 1 -0.4082 -7.4981 -4.4179 41 1 -1.2703 -5.7815 -5.8375 42 1 -1.6031 -5.9288 -2.5852 43 1 -0.9910 -8.2777 -2.4640 44 1 0.0327 -7.8567 -1.0701 45 1 -1.8196 -9.6582 -0.3034 46 1 -3.2462 -12.0932 1.4787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717783272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:46 Heat of formation + Delta-G solvation = -53.513410 kcal Electronic energy + Delta-G solvation = -29067.189202 eV Core-core repulsion = 24800.251652 eV Total energy + Delta-G solvation = -4266.937550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22223 -39.80517 -38.68984 -37.73643 -35.59136 -34.25952 -34.10653 -33.73281 -31.79655 -31.34451 -30.40440 -28.34972 -26.85801 -26.28749 -25.48024 -23.99997 -21.54652 -21.05371 -21.04421 -19.75017 -19.41297 -18.10903 -17.75922 -17.56155 -17.33016 -16.44574 -15.84928 -15.68800 -15.50535 -15.20981 -14.84695 -14.66101 -14.43350 -14.32338 -13.93449 -13.87298 -13.71736 -13.61976 -13.33283 -13.08191 -12.72209 -12.67534 -12.40874 -12.37735 -12.15789 -11.92493 -11.72905 -11.55934 -11.40663 -11.09463 -10.51059 -10.47937 -10.30913 -10.26773 -10.04647 -9.58579 -9.56651 -9.15043 -8.61196 -8.39051 -8.23580 -8.05583 -6.50364 -3.91537 1.86151 2.36459 2.47920 3.09163 3.13756 3.15808 3.20453 3.24453 3.79325 3.81174 4.07550 4.28544 4.39498 4.42497 4.45751 4.60094 4.66984 4.74015 4.82246 5.03150 5.08595 5.13838 5.18247 5.19972 5.32916 5.35635 5.43628 5.55141 5.65014 5.68510 5.80452 5.80880 5.91127 6.14193 6.17543 6.28452 6.68000 6.99609 7.02963 7.33264 7.38987 7.46849 7.52305 7.96778 8.01597 8.04910 8.51351 9.09007 9.44304 9.95308 10.67072 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.002359 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.518357 B =11864.949352 C =13499.895026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.223 3.777 3 N -0.495 5.495 4 C -0.028 4.028 5 C -0.054 4.054 6 N -0.441 5.441 7 C 0.083 3.917 8 C 0.494 3.506 9 O -0.530 6.530 10 N -0.706 5.706 11 C 0.139 3.861 12 C 0.075 3.925 13 H 0.095 0.905 14 C 0.046 3.954 15 O -0.565 6.565 16 N -0.660 5.660 17 C 0.047 3.953 18 C 0.439 3.561 19 O -0.581 6.581 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.411 0.589 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.381 0.619 42 H 0.364 0.636 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.048 9.238 -6.705 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.039 4.039 3 N -0.214 5.214 4 C -0.176 4.176 5 C -0.186 4.186 6 N -0.124 5.124 7 C -0.044 4.044 8 C 0.277 3.723 9 O -0.406 6.406 10 N -0.358 5.358 11 C 0.014 3.986 12 C -0.037 4.037 13 H 0.113 0.887 14 C -0.034 4.034 15 O -0.371 6.371 16 N -0.294 5.294 17 C -0.085 4.085 18 C 0.224 3.776 19 O -0.466 6.466 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.228 0.772 42 H 0.186 0.814 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.767 11.407 -5.997 18.141 hybrid contribution -0.339 -2.875 -0.623 2.961 sum 12.429 8.532 -6.619 16.465 Atomic orbital electron populations 1.20209 0.85000 1.04358 1.03378 1.23275 0.95673 0.81087 1.03912 1.70244 1.02279 1.28097 1.20806 1.22205 0.94792 0.92667 1.07891 1.22601 0.86707 0.96934 1.12343 1.44851 1.06745 1.05941 1.54855 1.21696 1.04484 0.81720 0.96488 1.20625 0.78170 0.82570 0.90921 1.90782 1.51664 1.52831 1.45324 1.45727 1.66865 1.12778 1.10448 1.21225 1.00419 0.94443 0.82475 1.21987 0.95211 0.96578 0.89884 0.88734 1.22834 0.91792 0.92750 0.96033 1.86489 1.60392 1.54394 1.35805 1.60158 1.07232 1.22156 1.39824 1.21758 0.99290 0.89562 0.97926 1.19746 0.87753 0.84436 0.85661 1.90543 1.53465 1.36944 1.65607 1.41859 1.26888 1.09402 1.41728 1.19647 1.04528 0.96955 1.21888 0.87949 1.25266 0.99130 0.94919 0.98541 1.69594 1.39223 1.00949 1.44507 0.85917 0.81071 0.77171 0.80079 1.19875 1.20955 1.19838 0.90052 0.89107 0.90817 0.81458 0.81129 0.85681 0.85972 0.75338 0.90164 0.91573 0.93080 0.92904 0.77159 0.81449 0.93890 0.89629 0.77509 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.04 36.01 0.36 -0.39 16 2 C 0.22 2.95 7.88 -155.41 -1.23 1.72 16 3 N -0.50 -7.30 11.25 -10.82 -0.12 -7.42 16 4 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 5 C -0.05 -0.59 11.58 -16.56 -0.19 -0.78 16 6 N -0.44 -5.09 2.24 -115.19 -0.26 -5.35 16 7 C 0.08 0.73 6.16 -5.20 -0.03 0.70 16 8 C 0.49 5.73 7.90 -10.98 -0.09 5.64 16 9 O -0.53 -8.46 16.42 5.55 0.09 -8.36 16 10 N -0.71 -7.28 5.39 -60.29 -0.32 -7.60 16 11 C 0.14 1.50 5.26 -4.04 -0.02 1.48 16 12 C 0.07 0.74 2.57 -67.71 -0.17 0.56 16 13 H 0.09 0.78 7.80 -51.93 -0.40 0.37 16 14 C 0.05 0.40 6.72 37.16 0.25 0.65 16 15 O -0.57 -5.57 12.05 -35.23 -0.42 -6.00 16 16 N -0.66 -8.92 5.32 -107.99 -0.57 -9.50 16 17 C 0.05 0.71 5.96 -4.98 -0.03 0.68 16 18 C 0.44 9.47 7.82 -10.99 -0.09 9.39 16 19 O -0.58 -14.76 15.78 5.54 0.09 -14.67 16 20 N -0.56 -13.32 5.29 -10.97 -0.06 -13.38 16 21 C -0.30 -8.01 9.68 -14.93 -0.14 -8.15 16 22 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -23.54 13.05 55.50 0.72 -22.82 16 25 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.77 7.84 -51.93 -0.41 0.37 16 32 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.13 0.90 7.94 -51.93 -0.41 0.49 16 35 H 0.12 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.41 3.81 8.14 -40.82 -0.33 3.48 16 37 H 0.08 1.08 7.39 -51.93 -0.38 0.70 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.46 7.35 -51.93 -0.38 0.08 16 41 H 0.38 2.16 9.12 45.56 0.42 2.58 16 42 H 0.36 5.79 7.64 -39.29 -0.30 5.49 16 43 H 0.04 0.58 7.36 -51.93 -0.38 0.20 16 44 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 45 H 0.39 8.84 7.90 -40.82 -0.32 8.52 16 46 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -36.54 395.41 -7.41 -43.95 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -5.80 Total: 18.44 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.69 Total: 11.44 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -0.61 Total: -66.06 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.25 Total: -29.03 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.54 -7.41 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.561 kcal (2) G-P(sol) polarization free energy of solvation -36.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds