Wall clock time and date at job start Tue Mar 31 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30493 * 125.65400 * 2 1 4 4 C 1.34132 * 109.25643 * 180.29457 * 3 2 1 5 5 C 1.34668 * 108.02185 * 359.72322 * 4 3 2 6 6 N 1.35049 * 125.64332 * 179.82838 * 2 1 3 7 7 C 1.46491 * 126.40241 * 359.97186 * 6 2 1 8 8 C 1.50702 * 109.46957 * 84.71414 * 7 6 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47492 * 295.00479 * 12 11 10 14 14 C 1.52999 * 109.47469 * 175.00230 * 12 11 10 15 15 O 1.42905 * 109.46727 * 305.00126 * 14 12 11 16 16 N 1.46904 * 109.46866 * 55.00128 * 12 11 10 17 17 C 1.46901 * 111.00212 * 205.00115 * 16 12 11 18 18 C 1.50695 * 109.47230 * 180.02562 * 17 16 12 19 19 O 1.21295 * 120.00087 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99821 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99649 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00170 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99832 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00269 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00297 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47189 * 59.99608 * 25 23 21 27 27 H 1.48493 * 109.47420 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46800 * 300.00101 * 25 23 21 29 29 H 1.09001 * 109.46773 * 270.17549 * 1 2 3 30 30 H 1.08998 * 109.46646 * 30.16986 * 1 2 3 31 31 H 1.08992 * 109.47415 * 150.17244 * 1 2 3 32 32 H 1.07996 * 125.98763 * 179.72768 * 4 3 2 33 33 H 1.07997 * 126.59179 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.47166 * 324.71679 * 7 6 2 35 35 H 1.08994 * 109.47507 * 204.71386 * 7 6 2 36 36 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 37 37 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 38 38 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 39 39 H 1.08996 * 109.46836 * 65.00096 * 14 12 11 40 40 H 1.08997 * 109.47032 * 185.00466 * 14 12 11 41 41 H 0.96705 * 113.99382 * 180.02562 * 15 14 12 42 42 H 1.00906 * 110.99887 * 81.04663 * 16 12 11 43 43 H 1.09003 * 109.46810 * 300.00070 * 17 16 12 44 44 H 1.08993 * 109.46680 * 59.99941 * 17 16 12 45 45 H 0.96996 * 120.00282 * 0.02562 * 20 18 17 46 46 H 0.96992 * 120.00545 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0603 0.0000 4 6 3.5544 0.6817 -0.0065 5 6 3.5926 -0.6645 -0.0045 6 7 2.2940 -1.0975 0.0033 7 6 1.8424 -2.4911 0.0080 8 6 1.5625 -2.9332 -1.4052 9 8 1.7247 -2.1604 -2.3258 10 7 1.1377 -4.1892 -1.6467 11 6 0.8713 -4.6210 -3.0211 12 6 0.4044 -6.0779 -3.0166 13 1 1.2137 -6.7178 -2.6651 14 6 0.0075 -6.4907 -4.4354 15 8 -0.9714 -5.5801 -4.9401 16 7 -0.7537 -6.2182 -2.1238 17 6 -0.8690 -7.5946 -1.6234 18 6 -2.0658 -7.6997 -0.7137 19 8 -2.7551 -6.7242 -0.5031 20 7 -2.3707 -8.8780 -0.1347 21 6 -3.4591 -8.9734 0.6934 22 1 -4.0724 -8.1046 0.8815 23 6 -3.7732 -10.1880 1.2907 24 7 -3.0273 -11.2454 1.0615 25 14 -5.2567 -10.3184 2.4185 26 1 -6.4849 -9.9614 1.6641 27 1 -5.3729 -11.7096 2.9247 28 1 -5.0911 -9.3876 3.5637 29 1 -0.3633 0.0031 1.0277 30 1 -0.3632 0.8885 -0.5165 31 1 -0.3634 -0.8914 -0.5111 32 1 4.4099 1.3408 -0.0123 33 1 4.4776 -1.2834 -0.0088 34 1 0.9326 -2.5762 0.6023 35 1 2.6186 -3.1231 0.4394 36 1 1.0082 -4.8074 -0.9105 37 1 0.0942 -3.9920 -3.4553 38 1 1.7826 -4.5328 -3.6126 39 1 0.8872 -6.4718 -5.0788 40 1 -0.4082 -7.4981 -4.4179 41 1 -1.2703 -5.7815 -5.8375 42 1 -1.6031 -5.9288 -2.5852 43 1 -0.9910 -8.2777 -2.4640 44 1 0.0327 -7.8567 -1.0701 45 1 -1.8196 -9.6582 -0.3034 46 1 -3.2462 -12.0932 1.4787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717783272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:45 Heat of formation + Delta-G solvation = -85.117195 kcal Electronic energy + Delta-G solvation = -29068.559645 eV Core-core repulsion = 24800.251652 eV Total energy + Delta-G solvation = -4268.307993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.08941 -40.75220 -40.13955 -38.84929 -36.47678 -35.93450 -35.00896 -34.92582 -33.23356 -32.64478 -31.42952 -29.20323 -27.81899 -27.65467 -26.29038 -25.57065 -22.40719 -21.95057 -21.88362 -21.09563 -20.59820 -19.90317 -18.70792 -18.37183 -18.16012 -17.74436 -16.90991 -16.79427 -16.48652 -16.45640 -16.07867 -15.96860 -15.57447 -15.30330 -15.18842 -15.05393 -14.62603 -14.55617 -14.42754 -13.97914 -13.90607 -13.55154 -13.50419 -13.35890 -13.25058 -13.21846 -12.94346 -12.88244 -12.59719 -12.41130 -12.26600 -12.12301 -11.47918 -11.45866 -10.98743 -10.95186 -10.48853 -10.31158 -10.06615 -9.98479 -9.34428 -9.25992 -8.44915 -5.92712 0.99404 1.40610 1.43404 1.48793 1.53071 1.69998 2.09777 2.18498 2.29226 2.32720 2.85652 3.23182 3.35130 3.59100 3.64556 3.69223 3.76657 3.82210 3.90497 4.07897 4.14391 4.32134 4.36016 4.42453 4.46306 4.54153 4.56111 4.64352 4.65080 4.69626 4.78621 4.83595 4.97790 5.00409 5.32187 5.41413 5.43226 5.85242 5.90253 6.11082 6.16956 6.33126 6.53251 6.63162 6.87454 7.14192 7.15872 7.17374 7.60532 8.16160 8.71950 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.002359 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.518357 B =11864.949352 C =13499.895026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.199 3.801 3 N -0.533 5.533 4 C -0.056 4.056 5 C -0.048 4.048 6 N -0.443 5.443 7 C 0.083 3.917 8 C 0.494 3.506 9 O -0.579 6.579 10 N -0.696 5.696 11 C 0.144 3.856 12 C 0.079 3.921 13 H 0.123 0.877 14 C 0.046 3.954 15 O -0.590 6.590 16 N -0.668 5.668 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.988 3.012 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.186 0.814 33 H 0.205 0.795 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.418 0.582 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.397 0.603 42 H 0.349 0.651 43 H 0.065 0.935 44 H 0.116 0.884 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.455 7.667 -6.503 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.063 4.063 3 N -0.254 5.254 4 C -0.203 4.203 5 C -0.180 4.180 6 N -0.126 5.126 7 C -0.042 4.042 8 C 0.279 3.721 9 O -0.459 6.459 10 N -0.348 5.348 11 C 0.019 3.981 12 C -0.031 4.031 13 H 0.140 0.860 14 C -0.034 4.034 15 O -0.398 6.398 16 N -0.300 5.300 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.812 3.188 26 H -0.200 1.200 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.203 0.797 33 H 0.222 0.778 34 H 0.159 0.841 35 H 0.179 0.821 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.247 0.753 42 H 0.168 0.832 43 H 0.083 0.917 44 H 0.134 0.866 45 H 0.231 0.769 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.195 9.787 -5.803 18.192 hybrid contribution -0.742 -2.339 -0.760 2.569 sum 13.453 7.448 -6.563 16.719 Atomic orbital electron populations 1.20235 0.83972 1.03993 1.04398 1.23657 0.96596 0.81617 1.04472 1.70184 1.03629 1.29537 1.22023 1.22679 0.94686 0.94039 1.08873 1.23176 0.87489 0.96947 1.10365 1.45025 1.06796 1.06617 1.54135 1.21959 1.06642 0.80824 0.94797 1.21088 0.77161 0.82259 0.91584 1.90767 1.53937 1.54094 1.47069 1.45696 1.65909 1.12612 1.10578 1.21134 0.99763 0.94520 0.82692 1.22085 0.94366 0.96320 0.90323 0.85957 1.22864 0.92511 0.92434 0.95545 1.86459 1.60946 1.55121 1.37281 1.60120 1.07590 1.21210 1.41125 1.21632 0.96864 0.90964 0.97390 1.20928 0.88646 0.82934 0.84905 1.90519 1.55344 1.38215 1.66838 1.41922 1.26638 1.10407 1.42158 1.19578 1.05950 0.96693 1.23819 0.90459 1.25951 1.01384 0.94358 0.99436 1.69646 1.40172 1.01200 1.45027 0.85064 0.77955 0.77551 0.78258 1.19957 1.19693 1.19725 0.88288 0.89507 0.91078 0.79726 0.77774 0.84064 0.82108 0.74440 0.93199 0.90759 0.90686 0.92572 0.75321 0.83198 0.91719 0.86574 0.76936 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 10.04 71.24 0.72 -0.73 16 2 C 0.20 5.26 7.88 138.13 1.09 6.35 16 3 N -0.53 -15.95 11.25 -188.13 -2.12 -18.07 16 4 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 5 C -0.05 -0.97 11.58 83.08 0.96 -0.01 16 6 N -0.44 -9.67 2.24 -518.36 -1.16 -10.83 16 7 C 0.08 1.27 6.16 85.64 0.53 1.80 16 8 C 0.49 10.80 7.90 87.66 0.69 11.49 16 9 O -0.58 -18.37 16.42 -3.04 -0.05 -18.42 16 10 N -0.70 -13.05 5.39 -463.06 -2.50 -15.55 16 11 C 0.14 2.89 5.26 86.38 0.45 3.34 16 12 C 0.08 1.35 2.57 44.91 0.12 1.47 16 13 H 0.12 1.46 7.80 -2.39 -0.02 1.44 16 14 C 0.05 0.68 6.72 71.98 0.48 1.17 16 15 O -0.59 -10.93 12.05 -148.98 -1.80 -12.73 16 16 N -0.67 -16.78 5.32 -495.59 -2.63 -19.41 16 17 C 0.06 1.73 5.96 85.56 0.51 2.24 16 18 C 0.44 18.65 7.82 87.66 0.69 19.33 16 19 O -0.62 -31.92 15.78 -3.08 -0.05 -31.97 16 20 N -0.57 -27.07 5.29 -306.99 -1.62 -28.69 16 21 C -0.33 -17.81 9.68 84.04 0.81 -17.00 16 22 H 0.08 4.47 7.16 -2.91 -0.02 4.45 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 24 N -0.92 -47.33 13.05 21.66 0.28 -47.05 16 25 Si 0.99 41.33 29.55 68.60 2.03 43.36 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.51 7.84 -2.39 -0.02 1.49 16 32 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.21 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.14 1.72 7.94 -2.38 -0.02 1.70 16 35 H 0.16 1.19 8.13 -2.39 -0.02 1.17 16 36 H 0.42 6.65 8.14 -92.71 -0.75 5.89 16 37 H 0.05 1.34 7.39 -2.39 -0.02 1.32 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.81 7.35 -2.39 -0.02 0.79 16 41 H 0.40 4.04 9.12 -74.05 -0.68 3.37 16 42 H 0.35 10.83 7.64 -89.69 -0.69 10.15 16 43 H 0.06 1.54 7.36 -2.39 -0.02 1.52 16 44 H 0.12 2.53 8.05 -2.39 -0.02 2.51 16 45 H 0.40 17.62 7.90 -92.71 -0.73 16.88 16 46 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -81.96 395.41 -2.90 -84.86 By element: Atomic # 1 Polarization: 47.34 SS G_CDS: -1.79 Total: 45.55 kcal Atomic # 6 Polarization: 20.46 SS G_CDS: 8.51 Total: 28.96 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -9.75 Total: -139.61 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -1.89 Total: -63.12 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -81.96 -2.90 -84.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.254 kcal (2) G-P(sol) polarization free energy of solvation -81.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds