Wall clock time and date at job start Tue Mar 31 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30499 * 125.65123 * 2 1 4 4 C 1.34127 * 109.25921 * 180.28830 * 3 2 1 5 5 C 1.34669 * 108.01600 * 359.73283 * 4 3 2 6 6 N 1.35042 * 125.65384 * 179.82583 * 2 1 3 7 7 C 1.46505 * 126.39296 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47064 * 84.71650 * 7 6 2 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47610 * 64.99781 * 12 11 10 14 14 C 1.53000 * 109.47086 * 185.00163 * 12 11 10 15 15 O 1.42895 * 109.47673 * 54.99704 * 14 12 11 16 16 N 1.46908 * 109.46971 * 304.99800 * 12 11 10 17 17 C 1.46897 * 110.99607 * 155.00192 * 16 12 11 18 18 C 1.50703 * 109.46979 * 179.97438 * 17 16 12 19 19 O 1.21301 * 119.99660 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00222 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99653 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00549 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99354 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00484 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99641 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46895 * 90.00181 * 25 23 21 27 27 H 1.48507 * 109.46966 * 210.00089 * 25 23 21 28 28 H 1.48499 * 109.47206 * 330.00216 * 25 23 21 29 29 H 1.08998 * 109.47677 * 270.17429 * 1 2 3 30 30 H 1.09003 * 109.47218 * 30.17595 * 1 2 3 31 31 H 1.09004 * 109.47110 * 150.17397 * 1 2 3 32 32 H 1.08001 * 125.99003 * 179.71998 * 4 3 2 33 33 H 1.08005 * 126.58968 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47068 * 204.71619 * 7 6 2 35 35 H 1.09001 * 109.47372 * 324.71707 * 7 6 2 36 36 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47021 * 299.99722 * 11 10 8 38 38 H 1.09001 * 109.47001 * 59.99554 * 11 10 8 39 39 H 1.09003 * 109.47343 * 175.00411 * 14 12 11 40 40 H 1.09001 * 109.46604 * 294.99308 * 14 12 11 41 41 H 0.96700 * 114.00507 * 179.97438 * 15 14 12 42 42 H 1.00904 * 110.99812 * 278.95378 * 16 12 11 43 43 H 1.09002 * 109.47410 * 299.99574 * 17 16 12 44 44 H 1.09002 * 109.47608 * 60.00172 * 17 16 12 45 45 H 0.96997 * 119.99819 * 0.02562 * 20 18 17 46 46 H 0.97000 * 120.00121 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0064 5 6 3.5925 -0.6642 -0.0045 6 7 2.2941 -1.0973 0.0033 7 6 1.8425 -2.4910 0.0081 8 6 1.5627 -2.9332 -1.4052 9 8 1.7241 -2.1602 -2.3256 10 7 1.1321 -4.1874 -1.6461 11 6 0.8606 -4.6175 -3.0199 12 6 0.3889 -6.0729 -3.0150 13 1 -0.5674 -6.1432 -2.4965 14 6 0.2250 -6.5608 -4.4558 15 8 1.4471 -6.3604 -5.1686 16 7 1.3822 -6.9072 -2.3255 17 6 0.7612 -8.1204 -1.7774 18 6 1.8086 -8.9495 -1.0797 19 8 2.9591 -8.5670 -1.0423 20 7 1.4667 -10.1154 -0.4964 21 6 2.4195 -10.8693 0.1388 22 1 3.4441 -10.5293 0.1713 23 6 2.0669 -12.0711 0.7406 24 7 0.8205 -12.4852 0.7006 25 14 3.3652 -13.0988 1.6054 26 1 3.4471 -12.6945 3.0319 27 1 2.9985 -14.5352 1.5182 28 1 4.6820 -12.8836 0.9535 29 1 -0.3634 0.0031 1.0276 30 1 -0.3634 0.8884 -0.5166 31 1 -0.3633 -0.8916 -0.5111 32 1 4.4098 1.3411 -0.0122 33 1 4.4776 -1.2832 -0.0087 34 1 2.6188 -3.1230 0.4396 35 1 0.9327 -2.5761 0.6023 36 1 1.0027 -4.8055 -0.9098 37 1 0.0849 -3.9852 -3.4520 38 1 1.7708 -4.5329 -3.6137 39 1 -0.0248 -7.6218 -4.4539 40 1 -0.5744 -6.0003 -4.9404 41 1 1.4161 -6.6482 -6.0913 42 1 2.1485 -7.1391 -2.9396 43 1 -0.0153 -7.8412 -1.0652 44 1 0.3196 -8.7005 -2.5877 45 1 0.5467 -10.4210 -0.5259 46 1 0.5745 -13.3243 1.1204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717783273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:49 Heat of formation + Delta-G solvation = -53.662540 kcal Electronic energy + Delta-G solvation = -29000.038100 eV Core-core repulsion = 24733.094083 eV Total energy + Delta-G solvation = -4266.944017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.23064 -39.80681 -38.69216 -37.73916 -35.59379 -34.26266 -34.11053 -33.73614 -31.85914 -31.34870 -30.40669 -28.35610 -26.89551 -26.29029 -25.48260 -24.00346 -21.54486 -21.05810 -21.04731 -19.76287 -19.41927 -18.11351 -17.76409 -17.56283 -17.34261 -16.43463 -15.89260 -15.63474 -15.54980 -15.23004 -14.79510 -14.67296 -14.42893 -14.34010 -14.01221 -13.88940 -13.72040 -13.55171 -13.34587 -13.12663 -12.78903 -12.71603 -12.51697 -12.37930 -12.16241 -11.92576 -11.73084 -11.56310 -11.40926 -11.11984 -10.48267 -10.46565 -10.31592 -10.27023 -10.06303 -9.59976 -9.56884 -9.15085 -8.61487 -8.39758 -8.23825 -8.06001 -6.50901 -3.91954 1.85869 2.36350 2.47697 3.08725 3.11112 3.14802 3.20718 3.26203 3.78936 3.81016 4.07280 4.28498 4.36646 4.38786 4.46197 4.60063 4.66875 4.73299 4.82121 5.02860 5.08508 5.13548 5.15386 5.18063 5.29414 5.32700 5.35874 5.54923 5.60566 5.64887 5.73421 5.80633 5.91137 6.13935 6.16885 6.28442 6.68051 6.99489 7.02332 7.33222 7.38928 7.46598 7.51983 7.96574 8.01287 8.03382 8.50969 9.08714 9.43954 9.94952 10.66615 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.002288 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.555290 B =12236.220682 C =13779.410526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.216 3.784 3 N -0.494 5.494 4 C -0.030 4.030 5 C -0.048 4.048 6 N -0.440 5.440 7 C 0.083 3.917 8 C 0.494 3.506 9 O -0.530 6.530 10 N -0.706 5.706 11 C 0.139 3.861 12 C 0.075 3.925 13 H 0.095 0.905 14 C 0.046 3.954 15 O -0.566 6.566 16 N -0.660 5.660 17 C 0.047 3.953 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.411 0.589 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.381 0.619 42 H 0.364 0.636 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 15.526 -4.882 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.047 4.047 3 N -0.213 5.213 4 C -0.177 4.177 5 C -0.180 4.180 6 N -0.123 5.123 7 C -0.044 4.044 8 C 0.277 3.723 9 O -0.406 6.406 10 N -0.358 5.358 11 C 0.014 3.986 12 C -0.037 4.037 13 H 0.113 0.887 14 C -0.034 4.034 15 O -0.371 6.371 16 N -0.294 5.294 17 C -0.085 4.085 18 C 0.224 3.776 19 O -0.466 6.466 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.186 0.814 33 H 0.191 0.809 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.247 0.753 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.228 0.772 42 H 0.185 0.815 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.701 17.398 -4.267 18.799 hybrid contribution -0.034 -2.979 -0.646 3.048 sum -5.735 14.419 -4.913 16.277 Atomic orbital electron populations 1.20157 0.85253 1.04056 1.03111 1.23206 0.95574 0.81221 1.04654 1.70220 1.02345 1.28105 1.20667 1.22208 0.94729 0.92693 1.08038 1.22682 0.86788 0.96964 1.11561 1.44830 1.06798 1.05894 1.54797 1.21701 1.04472 0.81822 0.96395 1.20622 0.78069 0.82648 0.90943 1.90781 1.51354 1.53129 1.45332 1.45728 1.67104 1.12531 1.10456 1.21226 1.01795 0.92722 0.82820 1.21991 0.96865 0.93450 0.91356 0.88693 1.22835 0.86986 0.99809 0.93782 1.86486 1.35238 1.87280 1.28095 1.60159 1.10037 1.18815 1.40384 1.21760 0.97059 0.91099 0.98614 1.19756 0.89435 0.83364 0.85039 1.90546 1.20385 1.71769 1.63881 1.41865 1.11639 1.18079 1.48315 1.19695 0.92414 1.00872 1.29991 0.87909 1.25265 0.97085 0.97566 0.97957 1.69601 1.16772 1.22963 1.44904 0.85860 0.80476 0.78491 0.79497 1.20339 1.20898 1.19399 0.90234 0.89174 0.91168 0.81380 0.80923 0.85532 0.86109 0.75338 0.91511 0.90223 0.92908 0.93058 0.77159 0.81465 0.89601 0.93881 0.77504 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.04 36.00 0.36 -0.23 16 2 C 0.22 2.70 7.88 -155.42 -1.23 1.48 16 3 N -0.49 -7.12 11.25 -10.82 -0.12 -7.24 16 4 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 5 C -0.05 -0.56 11.58 -16.57 -0.19 -0.75 16 6 N -0.44 -5.08 2.24 -115.18 -0.26 -5.34 16 7 C 0.08 0.73 6.16 -5.19 -0.03 0.70 16 8 C 0.49 5.73 7.90 -10.98 -0.09 5.64 16 9 O -0.53 -8.46 16.41 5.56 0.09 -8.36 16 10 N -0.71 -7.28 5.39 -60.30 -0.32 -7.60 16 11 C 0.14 1.50 5.26 -4.05 -0.02 1.48 16 12 C 0.07 0.74 2.57 -67.71 -0.17 0.56 16 13 H 0.10 0.77 7.80 -51.93 -0.40 0.37 16 14 C 0.05 0.40 6.71 37.16 0.25 0.65 16 15 O -0.57 -5.61 12.05 -35.23 -0.42 -6.03 16 16 N -0.66 -8.98 5.31 -107.99 -0.57 -9.55 16 17 C 0.05 0.71 5.96 -4.98 -0.03 0.68 16 18 C 0.44 9.50 7.82 -10.98 -0.09 9.42 16 19 O -0.58 -14.85 15.78 5.54 0.09 -14.76 16 20 N -0.56 -13.35 5.29 -10.96 -0.06 -13.41 16 21 C -0.30 -8.01 9.68 -14.93 -0.14 -8.16 16 22 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -23.55 13.05 55.50 0.72 -22.82 16 25 Si 0.93 20.35 29.55 -169.99 -5.02 15.32 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 32 H 0.17 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.17 1.57 8.06 -52.48 -0.42 1.14 16 34 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.12 0.69 7.94 -51.93 -0.41 0.28 16 36 H 0.41 3.81 8.14 -40.82 -0.33 3.48 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.08 7.39 -51.93 -0.38 0.70 16 39 H 0.05 0.46 7.35 -51.93 -0.38 0.08 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 2.18 9.12 45.56 0.42 2.60 16 42 H 0.36 5.84 7.64 -39.29 -0.30 5.54 16 43 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 44 H 0.04 0.59 7.36 -51.93 -0.38 0.20 16 45 H 0.39 8.85 7.90 -40.82 -0.32 8.53 16 46 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -36.79 395.41 -7.41 -44.20 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -5.80 Total: 18.25 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.69 Total: 11.39 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -0.61 Total: -65.96 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.25 Total: -29.16 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.79 -7.41 -44.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.464 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds