Wall clock time and date at job start Tue Mar 31 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30499 * 125.65123 * 2 1 4 4 C 1.34127 * 109.25921 * 180.28830 * 3 2 1 5 5 C 1.34669 * 108.01600 * 359.73283 * 4 3 2 6 6 N 1.35042 * 125.65384 * 179.82583 * 2 1 3 7 7 C 1.46505 * 126.39296 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47064 * 84.71650 * 7 6 2 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47610 * 64.99781 * 12 11 10 14 14 C 1.53000 * 109.47086 * 185.00163 * 12 11 10 15 15 O 1.42895 * 109.47673 * 54.99704 * 14 12 11 16 16 N 1.46908 * 109.46971 * 304.99800 * 12 11 10 17 17 C 1.46897 * 110.99607 * 155.00192 * 16 12 11 18 18 C 1.50703 * 109.46979 * 179.97438 * 17 16 12 19 19 O 1.21301 * 119.99660 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00222 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99653 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00549 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99354 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00484 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99641 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46895 * 90.00181 * 25 23 21 27 27 H 1.48507 * 109.46966 * 210.00089 * 25 23 21 28 28 H 1.48499 * 109.47206 * 330.00216 * 25 23 21 29 29 H 1.08998 * 109.47677 * 270.17429 * 1 2 3 30 30 H 1.09003 * 109.47218 * 30.17595 * 1 2 3 31 31 H 1.09004 * 109.47110 * 150.17397 * 1 2 3 32 32 H 1.08001 * 125.99003 * 179.71998 * 4 3 2 33 33 H 1.08005 * 126.58968 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47068 * 204.71619 * 7 6 2 35 35 H 1.09001 * 109.47372 * 324.71707 * 7 6 2 36 36 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47021 * 299.99722 * 11 10 8 38 38 H 1.09001 * 109.47001 * 59.99554 * 11 10 8 39 39 H 1.09003 * 109.47343 * 175.00411 * 14 12 11 40 40 H 1.09001 * 109.46604 * 294.99308 * 14 12 11 41 41 H 0.96700 * 114.00507 * 179.97438 * 15 14 12 42 42 H 1.00904 * 110.99812 * 278.95378 * 16 12 11 43 43 H 1.09002 * 109.47410 * 299.99574 * 17 16 12 44 44 H 1.09002 * 109.47608 * 60.00172 * 17 16 12 45 45 H 0.96997 * 119.99819 * 0.02562 * 20 18 17 46 46 H 0.97000 * 120.00121 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0064 5 6 3.5925 -0.6642 -0.0045 6 7 2.2941 -1.0973 0.0033 7 6 1.8425 -2.4910 0.0081 8 6 1.5627 -2.9332 -1.4052 9 8 1.7241 -2.1602 -2.3256 10 7 1.1321 -4.1874 -1.6461 11 6 0.8606 -4.6175 -3.0199 12 6 0.3889 -6.0729 -3.0150 13 1 -0.5674 -6.1432 -2.4965 14 6 0.2250 -6.5608 -4.4558 15 8 1.4471 -6.3604 -5.1686 16 7 1.3822 -6.9072 -2.3255 17 6 0.7612 -8.1204 -1.7774 18 6 1.8086 -8.9495 -1.0797 19 8 2.9591 -8.5670 -1.0423 20 7 1.4667 -10.1154 -0.4964 21 6 2.4195 -10.8693 0.1388 22 1 3.4441 -10.5293 0.1713 23 6 2.0669 -12.0711 0.7406 24 7 0.8205 -12.4852 0.7006 25 14 3.3652 -13.0988 1.6054 26 1 3.4471 -12.6945 3.0319 27 1 2.9985 -14.5352 1.5182 28 1 4.6820 -12.8836 0.9535 29 1 -0.3634 0.0031 1.0276 30 1 -0.3634 0.8884 -0.5166 31 1 -0.3633 -0.8916 -0.5111 32 1 4.4098 1.3411 -0.0122 33 1 4.4776 -1.2832 -0.0087 34 1 2.6188 -3.1230 0.4396 35 1 0.9327 -2.5761 0.6023 36 1 1.0027 -4.8055 -0.9098 37 1 0.0849 -3.9852 -3.4520 38 1 1.7708 -4.5329 -3.6137 39 1 -0.0248 -7.6218 -4.4539 40 1 -0.5744 -6.0003 -4.9404 41 1 1.4161 -6.6482 -6.0913 42 1 2.1485 -7.1391 -2.9396 43 1 -0.0153 -7.8412 -1.0652 44 1 0.3196 -8.7005 -2.5877 45 1 0.5467 -10.4210 -0.5259 46 1 0.5745 -13.3243 1.1204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717783273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:48 Heat of formation + Delta-G solvation = -85.494209 kcal Electronic energy + Delta-G solvation = -29001.418425 eV Core-core repulsion = 24733.094083 eV Total energy + Delta-G solvation = -4268.324342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.09219 -40.75396 -40.14536 -38.85212 -36.48072 -35.94223 -35.01018 -34.92745 -33.24160 -32.62864 -31.43108 -29.20293 -27.81987 -27.64835 -26.28969 -25.57540 -22.42369 -21.94416 -21.88667 -21.10219 -20.58624 -19.91063 -18.71258 -18.37088 -18.17153 -17.74828 -16.92636 -16.73467 -16.57651 -16.45258 -16.07769 -15.94562 -15.54229 -15.28970 -15.19148 -15.08420 -14.75685 -14.45720 -14.39239 -13.98966 -13.92351 -13.56158 -13.46733 -13.36502 -13.22776 -13.20204 -12.94308 -12.88932 -12.59646 -12.40410 -12.26554 -12.12787 -11.49115 -11.45872 -11.00053 -10.95339 -10.48470 -10.32011 -10.06590 -9.99084 -9.34757 -9.27554 -8.45749 -5.93464 0.99035 1.38243 1.42924 1.48519 1.54349 1.70024 2.08984 2.17548 2.28747 2.32590 2.85410 3.22433 3.34842 3.60724 3.64305 3.68875 3.75975 3.82400 3.91837 4.07783 4.13907 4.31823 4.36120 4.43742 4.46097 4.54224 4.56350 4.64141 4.69777 4.70506 4.78677 4.84284 5.00065 5.01645 5.30951 5.41421 5.42751 5.82131 5.89941 6.10821 6.19163 6.32340 6.53328 6.62509 6.87337 7.13039 7.15307 7.17245 7.59842 8.15539 8.71350 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.002288 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.555290 B =12236.220682 C =13779.410526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.203 3.797 3 N -0.534 5.534 4 C -0.053 4.053 5 C -0.055 4.055 6 N -0.444 5.444 7 C 0.084 3.916 8 C 0.494 3.506 9 O -0.579 6.579 10 N -0.696 5.696 11 C 0.143 3.857 12 C 0.079 3.921 13 H 0.124 0.876 14 C 0.046 3.954 15 O -0.590 6.590 16 N -0.669 5.669 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.987 3.013 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.275 1.275 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.183 0.817 33 H 0.194 0.806 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.418 0.582 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.397 0.603 42 H 0.348 0.652 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 14.835 -4.425 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.060 4.060 3 N -0.254 5.254 4 C -0.199 4.199 5 C -0.188 4.188 6 N -0.126 5.126 7 C -0.042 4.042 8 C 0.279 3.721 9 O -0.459 6.459 10 N -0.348 5.348 11 C 0.019 3.981 12 C -0.031 4.031 13 H 0.142 0.858 14 C -0.034 4.034 15 O -0.399 6.399 16 N -0.301 5.301 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.812 3.188 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.200 1.200 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.200 0.800 33 H 0.211 0.789 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.256 0.744 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.247 0.753 42 H 0.167 0.833 43 H 0.135 0.865 44 H 0.083 0.917 45 H 0.231 0.769 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.432 16.678 -3.809 18.652 hybrid contribution 0.505 -2.717 -0.860 2.894 sum -6.928 13.961 -4.669 16.270 Atomic orbital electron populations 1.20285 0.83014 1.04371 1.04691 1.23877 0.97003 0.81242 1.03872 1.70186 1.03333 1.29628 1.22245 1.22617 0.94913 0.93730 1.08668 1.23097 0.87734 0.97066 1.10881 1.45005 1.06615 1.06758 1.54259 1.21962 1.06737 0.80612 0.94902 1.21083 0.77028 0.82377 0.91599 1.90765 1.53582 1.54450 1.47061 1.45697 1.66239 1.12285 1.10561 1.21138 1.00619 0.93648 0.82707 1.22096 0.96826 0.91755 0.92428 0.85833 1.22869 0.87200 1.00287 0.93011 1.86456 1.36238 1.87590 1.29582 1.60122 1.10652 1.18342 1.40994 1.21636 0.95062 0.90855 0.99284 1.20946 0.90253 0.82749 0.83480 1.90521 1.22904 1.72600 1.65005 1.41924 1.11357 1.18828 1.49002 1.19607 0.92169 1.02278 1.31958 0.90522 1.25949 0.98976 0.98040 0.98150 1.69650 1.17743 1.23395 1.45220 0.85003 0.77897 0.77409 0.78512 1.19652 1.19744 1.20014 0.87913 0.89444 0.90221 0.79954 0.78903 0.83669 0.82545 0.74437 0.90574 0.93369 0.92577 0.90615 0.75326 0.83261 0.86499 0.91689 0.76911 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.04 71.23 0.72 -0.33 16 2 C 0.20 4.95 7.88 138.13 1.09 6.03 16 3 N -0.53 -15.53 11.25 -188.14 -2.12 -17.64 16 4 C -0.05 -1.35 11.87 83.52 0.99 -0.36 16 5 C -0.06 -1.27 11.58 83.09 0.96 -0.31 16 6 N -0.44 -9.75 2.24 -518.33 -1.16 -10.91 16 7 C 0.08 1.28 6.16 85.63 0.53 1.81 16 8 C 0.49 10.79 7.90 87.66 0.69 11.48 16 9 O -0.58 -18.35 16.41 -3.02 -0.05 -18.40 16 10 N -0.70 -13.02 5.39 -463.07 -2.50 -15.51 16 11 C 0.14 2.88 5.26 86.38 0.45 3.33 16 12 C 0.08 1.34 2.57 44.91 0.12 1.46 16 13 H 0.12 1.44 7.80 -2.39 -0.02 1.42 16 14 C 0.05 0.68 6.71 71.98 0.48 1.16 16 15 O -0.59 -10.99 12.05 -148.98 -1.80 -12.79 16 16 N -0.67 -16.87 5.31 -495.56 -2.63 -19.50 16 17 C 0.06 1.74 5.96 85.56 0.51 2.25 16 18 C 0.44 18.69 7.82 87.66 0.69 19.38 16 19 O -0.62 -32.15 15.78 -3.09 -0.05 -32.20 16 20 N -0.57 -27.10 5.29 -306.97 -1.62 -28.72 16 21 C -0.33 -17.83 9.68 84.04 0.81 -17.02 16 22 H 0.08 4.46 7.16 -2.91 -0.02 4.44 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -47.28 13.05 21.66 0.28 -47.00 16 25 Si 0.99 41.36 29.55 68.60 2.03 43.39 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 28 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.10 7.84 -2.38 -0.02 1.09 16 32 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.16 1.25 7.94 -2.39 -0.02 1.23 16 36 H 0.42 6.63 8.14 -92.70 -0.75 5.87 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.30 7.39 -2.39 -0.02 1.28 16 39 H 0.06 0.80 7.35 -2.39 -0.02 0.79 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.40 4.07 9.12 -74.06 -0.68 3.39 16 42 H 0.35 10.89 7.64 -89.69 -0.69 10.21 16 43 H 0.12 2.54 8.06 -2.39 -0.02 2.52 16 44 H 0.07 1.54 7.36 -2.39 -0.02 1.53 16 45 H 0.40 17.62 7.90 -92.71 -0.73 16.89 16 46 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -82.40 395.41 -2.90 -85.30 By element: Atomic # 1 Polarization: 47.01 SS G_CDS: -1.79 Total: 45.22 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 8.51 Total: 28.77 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -9.75 Total: -139.30 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -1.89 Total: -63.39 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -82.40 -2.90 -85.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717783273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.193 kcal (2) G-P(sol) polarization free energy of solvation -82.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds