Wall clock time and date at job start Tue Mar 31 2020 22:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47345 * 2 1 4 4 N 1.46506 * 109.47232 * 119.99507 * 2 1 3 5 5 C 1.46497 * 119.99960 * 304.81941 * 4 2 1 6 6 C 1.53000 * 109.46976 * 269.99311 * 5 4 2 7 7 N 1.46895 * 109.47313 * 180.02562 * 6 5 4 8 8 C 1.46901 * 110.99897 * 66.04897 * 7 6 5 9 9 C 1.46900 * 111.00142 * 189.99907 * 7 6 5 10 10 C 1.50694 * 109.47292 * 170.00120 * 9 7 6 11 11 O 1.21295 * 120.00039 * 0.02562 * 10 9 7 12 12 N 1.34783 * 120.00376 * 180.02562 * 10 9 7 13 13 C 1.37092 * 120.00110 * 180.02562 * 12 10 9 14 14 H 1.08006 * 120.00105 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99872 * 180.02562 * 13 12 10 16 16 N 1.31415 * 119.99946 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00071 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47241 * 90.00163 * 17 15 13 19 19 H 1.48496 * 109.47167 * 210.00115 * 17 15 13 20 20 H 1.48503 * 109.47116 * 329.99887 * 17 15 13 21 21 C 1.34773 * 119.99506 * 124.80959 * 4 2 1 22 22 O 1.21503 * 120.00294 * 4.13813 * 21 4 2 23 23 C 1.48280 * 119.99759 * 184.12917 * 21 4 2 24 24 C 1.47492 * 128.71120 * 174.42212 * 23 21 4 25 25 N 1.30654 * 102.71595 * 179.97438 * 24 23 21 26 26 O 1.20837 * 109.61543 * 359.97438 * 25 24 23 27 27 N 1.20900 * 115.91177 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47127 * 300.00104 * 1 2 3 29 29 H 1.08999 * 109.47006 * 60.00054 * 1 2 3 30 30 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47239 * 239.99587 * 2 1 3 32 32 H 1.08998 * 109.47182 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46561 * 300.00194 * 3 2 1 34 34 H 1.09002 * 109.47094 * 59.99875 * 3 2 1 35 35 H 1.08993 * 109.47623 * 29.99440 * 5 4 2 36 36 H 1.08998 * 109.46891 * 150.00104 * 5 4 2 37 37 H 1.09007 * 109.47191 * 300.00543 * 6 5 4 38 38 H 1.09002 * 109.46838 * 59.99736 * 6 5 4 39 39 H 1.09004 * 109.47210 * 60.00023 * 8 7 6 40 40 H 1.08995 * 109.47235 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.47285 * 300.00158 * 8 7 6 42 42 H 1.08996 * 109.47346 * 290.00583 * 9 7 6 43 43 H 1.09004 * 109.47261 * 50.00319 * 9 7 6 44 44 H 0.96993 * 119.99680 * 0.02562 * 12 10 9 45 45 H 0.96995 * 120.00173 * 179.97438 * 16 15 13 46 46 H 1.07996 * 128.64046 * 0.24450 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.5795 -0.2544 2.5242 6 6 2.5434 0.8079 3.0564 7 7 2.1038 1.2448 4.3882 8 6 2.2147 0.1522 5.3639 9 6 2.8587 2.4246 4.8311 10 6 2.2236 2.9894 6.0755 11 8 1.2392 2.4608 6.5474 12 7 2.7495 4.0819 6.6642 13 6 2.1720 4.5954 7.7966 14 1 1.2954 4.1246 8.2168 15 6 2.7138 5.7220 8.4031 16 7 2.1599 6.2144 9.4883 17 14 4.2294 6.5365 7.6760 18 1 3.8131 7.5703 6.6947 19 1 5.0179 7.1733 8.7613 20 1 5.0621 5.5134 6.9940 21 6 2.8712 -1.7271 1.0749 22 8 3.2938 -2.0412 -0.0201 23 6 3.2938 -2.4840 2.2779 24 6 4.1187 -3.7042 2.3573 25 7 4.1743 -3.9305 3.6428 26 8 3.5504 -3.0797 4.2319 27 7 3.0280 -2.2351 3.5425 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.5766 0.1667 2.4554 36 1 1.5695 -1.1080 3.2020 37 1 3.5464 0.3868 3.1252 38 1 2.5536 1.6615 2.3785 39 1 3.2529 -0.1737 5.4280 40 1 1.8834 0.5029 6.3413 41 1 1.5906 -0.6832 5.0464 42 1 3.8879 2.1376 5.0465 43 1 2.8491 3.1787 4.0440 44 1 3.5364 4.5048 6.2866 45 1 2.5383 7.0007 9.9120 46 1 4.5687 -4.2674 1.5532 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717951490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:54 Heat of formation + Delta-G solvation = 81.970209 kcal Electronic energy + Delta-G solvation = -30473.985173 eV Core-core repulsion = 26212.922633 eV Total energy + Delta-G solvation = -4261.062540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.25931 -40.66637 -38.80869 -37.47456 -36.16107 -35.20772 -34.88074 -33.90910 -32.59051 -31.67385 -29.65855 -27.88737 -27.57170 -26.56432 -25.47960 -24.46756 -23.86358 -22.24045 -21.28304 -19.87792 -19.34830 -19.34199 -18.53707 -18.25992 -17.88109 -16.93778 -16.26591 -15.68000 -15.44144 -15.18253 -14.96218 -14.78453 -14.50251 -14.38461 -13.99991 -13.61652 -13.52630 -13.29237 -13.13620 -13.08687 -12.70361 -12.50738 -12.42621 -12.26996 -12.03648 -11.92904 -11.75907 -11.59700 -11.47039 -11.24419 -11.18470 -11.15378 -11.01054 -10.89077 -10.60179 -10.54236 -9.97872 -9.53718 -9.25347 -8.56357 -8.18032 -7.98762 -6.31090 -3.82328 0.36089 0.96102 2.08575 2.47071 2.96406 3.02084 3.06299 3.11300 3.14744 3.42628 3.73817 3.95292 4.10012 4.19477 4.41305 4.52702 4.66414 4.71147 4.80298 4.89202 4.94157 4.97405 5.20520 5.23014 5.23821 5.31255 5.42882 5.52013 5.52438 5.61862 5.68123 5.70531 5.85120 5.88821 5.93771 5.98396 6.00457 6.09902 6.56208 6.75800 7.13424 7.26549 7.44955 7.58555 8.06109 8.14807 8.60405 8.95523 9.42672 9.83725 10.82101 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.002829 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.057501 B = 9896.019989 C =10957.531141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 C -0.168 4.168 4 N -0.584 5.584 5 C 0.091 3.909 6 C 0.041 3.959 7 N -0.513 5.513 8 C 0.024 3.976 9 C 0.044 3.956 10 C 0.454 3.546 11 O -0.557 6.557 12 N -0.592 5.592 13 C -0.304 4.304 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.879 3.121 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.606 3.394 22 O -0.519 6.519 23 C -0.044 4.044 24 C 0.035 3.965 25 N -0.351 5.351 26 O 0.341 5.659 27 N -0.308 5.308 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.027 0.973 38 H 0.080 0.920 39 H 0.015 0.985 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -15.647 -20.500 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 C -0.226 4.226 4 N -0.317 5.317 5 C -0.032 4.032 6 C -0.088 4.088 7 N -0.237 5.237 8 C -0.124 4.124 9 C -0.087 4.087 10 C 0.240 3.760 11 O -0.439 6.439 12 N -0.231 5.231 13 C -0.432 4.432 14 H 0.138 0.862 15 C -0.161 4.161 16 N -0.522 5.522 17 Si 0.705 3.295 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.196 1.196 21 C 0.390 3.610 22 O -0.394 6.394 23 C -0.209 4.209 24 C -0.151 4.151 25 N -0.074 5.074 26 O 0.116 5.884 27 N -0.029 5.029 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.251 -15.817 -19.454 25.173 hybrid contribution 2.305 0.628 -1.258 2.700 sum 4.556 -15.189 -20.711 26.085 Atomic orbital electron populations 1.22183 0.94017 1.02727 1.03319 1.21227 0.94652 0.93439 0.87544 1.22315 1.01790 0.95223 1.03266 1.47935 1.44514 1.30518 1.08688 1.22108 0.99538 0.99738 0.81783 1.22591 0.96073 0.98218 0.91934 1.61520 1.55145 1.05808 1.01257 1.22590 0.98695 0.92948 0.98153 1.21887 0.95312 0.93619 0.97920 1.19596 0.86956 0.83079 0.86402 1.90529 1.27058 1.60606 1.65693 1.42211 1.27856 1.26664 1.26396 1.19426 1.12831 1.09976 1.00991 0.86225 1.25029 0.98133 0.96844 0.96132 1.69619 1.40439 1.23302 1.18835 0.86687 0.83032 0.80193 0.79557 1.19622 1.20202 1.19577 1.16592 0.79194 0.79893 0.85288 1.90821 1.55209 1.67950 1.25421 1.26230 1.03128 0.98764 0.92755 1.27716 0.98203 0.95039 0.94147 1.75102 1.12587 1.11735 1.07932 1.85153 1.44794 1.24004 1.34491 1.75634 1.12796 1.10671 1.03813 0.91347 0.90809 0.92136 0.87875 0.92166 0.90975 0.91114 0.88336 0.87707 0.95443 0.90169 0.96620 0.88694 0.91600 0.93458 0.89439 0.79781 0.91630 0.75746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.07 37.16 0.34 -0.79 16 2 C 0.13 1.08 3.24 -67.93 -0.22 0.86 16 3 C -0.17 -1.26 8.44 37.16 0.31 -0.94 16 4 N -0.58 -5.58 2.40 -167.05 -0.40 -5.98 16 5 C 0.09 0.94 4.48 -4.04 -0.02 0.92 16 6 C 0.04 0.48 4.83 -3.83 -0.02 0.47 16 7 N -0.51 -7.81 4.50 -244.37 -1.10 -8.91 16 8 C 0.02 0.36 8.39 60.07 0.50 0.87 16 9 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 10 C 0.45 10.09 7.47 -10.99 -0.08 10.00 16 11 O -0.56 -14.45 13.91 5.54 0.08 -14.38 16 12 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 13 C -0.30 -8.49 10.16 -14.94 -0.15 -8.64 16 14 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 16 N -0.88 -25.64 13.96 55.50 0.77 -24.86 16 17 Si 0.88 19.26 27.74 -169.99 -4.71 14.54 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 21 C 0.61 6.45 7.70 -12.13 -0.09 6.36 16 22 O -0.52 -6.46 16.40 5.36 0.09 -6.37 16 23 C -0.04 -0.43 7.19 -80.07 -0.58 -1.00 16 24 C 0.03 0.28 12.63 -14.28 -0.18 0.10 16 25 N -0.35 -3.30 12.22 30.72 0.38 -2.92 16 26 O 0.34 3.45 11.65 27.27 0.32 3.77 16 27 N -0.31 -3.19 7.68 33.49 0.26 -2.93 16 28 H 0.07 0.50 6.52 -51.93 -0.34 0.16 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.90 6.93 -51.93 -0.36 0.54 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.58 6.01 -51.93 -0.31 0.26 16 35 H 0.10 1.00 6.19 -51.93 -0.32 0.68 16 36 H 0.11 1.14 3.41 -51.93 -0.18 0.97 16 37 H 0.03 0.34 7.96 -51.93 -0.41 -0.08 16 38 H 0.08 0.88 5.21 -51.93 -0.27 0.61 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.09 1.80 5.82 -51.93 -0.30 1.50 16 41 H 0.07 0.90 6.07 -51.93 -0.32 0.58 16 42 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 43 H 0.09 1.25 7.93 -51.93 -0.41 0.83 16 44 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.23 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -32.87 371.24 -5.07 -37.94 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.97 Total: 8.54 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.31 Total: 9.93 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.15 Total: -59.57 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.48 Total: -16.98 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.87 -5.07 -37.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717951490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.909 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds