Wall clock time and date at job start Tue Mar 31 2020 22:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46985 * 2 1 4 4 N 1.46496 * 109.45287 * 305.19273 * 3 2 1 5 5 C 1.36937 * 120.00082 * 296.07049 * 4 3 2 6 6 H 1.08003 * 119.99567 * 5.51725 * 5 4 3 7 7 C 1.38814 * 120.00487 * 185.51737 * 5 4 3 8 8 N 1.31625 * 119.99641 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00249 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47433 * 120.00014 * 9 7 5 12 12 H 1.48506 * 109.47210 * 240.00137 * 9 7 5 13 13 C 1.53039 * 109.45856 * 185.22531 * 3 2 1 14 14 C 1.53198 * 109.31191 * 178.61569 * 13 3 2 15 15 N 1.46924 * 108.77505 * 54.63774 * 14 13 3 16 16 C 1.34772 * 120.63405 * 126.36901 * 15 14 13 17 17 O 1.21286 * 119.99970 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00296 * 180.02562 * 16 15 14 19 19 N 1.46508 * 109.47298 * 180.02562 * 18 16 15 20 20 C 1.36363 * 125.96311 * 90.00003 * 19 18 16 21 21 O 1.35632 * 125.99368 * 359.69676 * 20 19 18 22 22 N 1.30909 * 108.02490 * 179.97438 * 20 19 18 23 23 N 1.40124 * 107.93529 * 359.97438 * 22 20 19 24 24 C 1.30905 * 107.93958 * 0.02562 * 23 22 20 25 25 O 1.35627 * 125.98909 * 179.97438 * 24 23 22 26 26 C 1.46934 * 118.73733 * 306.64067 * 15 14 13 27 27 C 1.52761 * 109.00649 * 53.31066 * 26 15 14 28 28 H 1.08997 * 109.46422 * 294.15549 * 1 2 3 29 29 H 1.08991 * 109.46921 * 54.15891 * 1 2 3 30 30 H 1.09003 * 109.47133 * 174.15851 * 1 2 3 31 31 H 1.09004 * 109.46749 * 240.00301 * 2 1 3 32 32 H 1.09001 * 109.47174 * 120.00258 * 2 1 3 33 33 H 0.96999 * 120.00315 * 116.06659 * 4 3 2 34 34 H 0.96991 * 119.99580 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.49886 * 58.66509 * 13 3 2 36 36 H 1.09000 * 109.49853 * 298.56336 * 13 3 2 37 37 H 1.08993 * 109.58662 * 294.84974 * 14 13 3 38 38 H 1.09003 * 109.58363 * 174.41909 * 14 13 3 39 39 H 1.09002 * 109.47574 * 59.99348 * 18 16 15 40 40 H 1.09007 * 109.47126 * 299.99504 * 18 16 15 41 41 H 0.96696 * 113.99547 * 90.00160 * 21 20 19 42 42 H 0.96700 * 113.99693 * 270.02571 * 25 24 23 43 43 H 1.08997 * 109.58120 * 173.14647 * 26 15 14 44 44 H 1.08996 * 109.58367 * 293.57045 * 26 15 14 45 45 H 1.09000 * 109.56150 * 185.54998 * 27 26 15 46 46 H 1.09002 * 109.35864 * 65.49915 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.4521 2.1678 -1.1288 5 6 1.7399 1.7866 -2.4122 6 1 2.3274 0.8986 -2.5928 7 6 1.2766 2.5416 -3.4810 8 7 0.5611 3.6242 -3.2608 9 14 1.6687 2.0213 -5.2316 10 1 2.4824 0.7792 -5.2085 11 1 0.4041 1.7714 -5.9688 12 1 2.4320 3.0998 -5.9095 13 6 3.5648 1.4441 -0.1314 14 6 4.0687 2.8904 -0.1659 15 7 3.5646 3.5952 1.0206 16 6 4.4106 4.2438 1.8452 17 8 5.6007 4.2490 1.6113 18 6 3.8781 4.9616 3.0586 19 7 4.9885 5.5825 3.7852 20 6 5.4726 6.8414 3.5844 21 8 5.0144 7.7357 2.6735 22 7 6.4611 7.0335 4.4209 23 7 6.6164 5.8663 5.1806 24 6 5.7177 5.0025 4.7810 25 8 5.5427 3.7501 5.2712 26 6 2.1211 3.5745 1.2945 27 6 1.6384 2.1252 1.3095 28 1 -0.3632 0.4205 0.9377 29 1 -0.3633 0.6017 -0.8330 30 1 -0.3633 -1.0223 -0.1046 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 0.8588 2.9180 -0.9673 34 1 0.2370 4.1515 -4.0076 35 1 3.8511 0.9371 -1.0528 36 1 4.0040 0.9261 0.7211 37 1 3.7031 3.3834 -1.0665 38 1 5.1587 2.8978 -0.1595 39 1 3.3710 4.2490 3.7090 40 1 3.1738 5.7322 2.7449 41 1 4.3106 8.3097 3.0056 42 1 6.0604 3.0730 4.8144 43 1 1.9266 4.0331 2.2639 44 1 1.5935 4.1244 0.5152 45 1 0.5536 2.1029 1.4136 46 1 2.0958 1.6007 2.1484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724890591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:14 Heat of formation + Delta-G solvation = 0.493091 kcal Electronic energy + Delta-G solvation = -31166.355052 eV Core-core repulsion = 26901.759400 eV Total energy + Delta-G solvation = -4264.595652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.49172 -40.23369 -38.38502 -38.26413 -37.28952 -35.03648 -34.52165 -32.72431 -31.24129 -30.30639 -29.75658 -29.38189 -28.09473 -25.03998 -23.92932 -23.06351 -22.96839 -22.38896 -21.60893 -19.99695 -19.09480 -18.81144 -18.34435 -17.51340 -17.18076 -16.89739 -16.47401 -15.68536 -15.60077 -15.38250 -14.73445 -14.35256 -14.03210 -14.01645 -13.87562 -13.68692 -13.37757 -13.13408 -13.08922 -12.64025 -12.59967 -12.52779 -12.12289 -11.91308 -11.57273 -11.44507 -11.28675 -10.97852 -10.93313 -10.75437 -10.74579 -10.72748 -10.48690 -10.31249 -10.12295 -9.83066 -9.69465 -9.60011 -9.51901 -9.05101 -8.46573 -7.07194 -5.89787 -3.18336 1.24835 1.55406 2.03950 2.39922 2.91793 3.05322 3.34665 3.41630 3.43586 3.55783 4.14522 4.19204 4.48124 4.58081 4.82384 5.00414 5.01370 5.10215 5.21998 5.39799 5.41250 5.46356 5.52160 5.65667 5.70720 5.83150 5.85407 5.88644 6.01234 6.02922 6.10381 6.24244 6.33553 6.45838 6.51377 6.63829 6.72271 6.78482 6.80141 6.92304 7.04917 7.07792 7.42406 7.62476 7.69729 8.01443 8.28936 9.41161 9.95239 10.30850 11.32436 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.003188 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.435591 B = 8782.150501 C = 9666.139358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.232 4.232 6 H 0.070 0.930 7 C -0.009 4.009 8 N -0.931 5.931 9 Si 0.900 3.100 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.132 4.132 14 C 0.122 3.878 15 N -0.588 5.588 16 C 0.495 3.505 17 O -0.539 6.539 18 C 0.082 3.918 19 N -0.495 5.495 20 C 0.419 3.581 21 O -0.431 6.431 22 N -0.298 5.298 23 N -0.297 5.297 24 C 0.416 3.584 25 O -0.439 6.439 26 C 0.106 3.894 27 C -0.132 4.132 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.410 0.590 42 H 0.415 0.585 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 0.371 14.881 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.111 3.889 4 N -0.354 5.354 5 C -0.363 4.363 6 H 0.088 0.912 7 C -0.205 4.205 8 N -0.579 5.579 9 Si 0.731 3.269 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.172 4.172 14 C 0.001 3.999 15 N -0.320 5.320 16 C 0.280 3.720 17 O -0.416 6.416 18 C -0.046 4.046 19 N -0.215 5.215 20 C 0.109 3.891 21 O -0.231 6.231 22 N -0.142 5.142 23 N -0.140 5.140 24 C 0.106 3.894 25 O -0.239 6.239 26 C -0.017 4.017 27 C -0.170 4.170 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.268 0.732 42 H 0.274 0.726 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.771 0.987 15.365 15.644 hybrid contribution -1.458 -0.855 -2.032 2.643 sum 1.313 0.132 13.334 13.399 Atomic orbital electron populations 1.21669 0.96039 1.00248 1.01922 1.21923 0.96410 0.98075 1.00047 1.19538 0.90851 0.91265 0.87292 1.42437 1.55485 1.37087 1.00425 1.19110 1.27841 1.06489 0.82858 0.91214 1.24678 1.00903 0.97290 0.97622 1.69641 1.40711 1.17377 1.30179 0.86237 0.77471 0.77618 0.85563 1.20627 1.22003 1.21970 1.22278 0.98165 0.95368 1.01388 1.21666 0.98796 0.92691 0.86789 1.48101 1.07386 1.50909 1.25648 1.20422 0.86963 0.80284 0.84325 1.90756 1.15428 1.61524 1.73909 1.21828 0.88194 1.00346 0.94185 1.46636 1.30403 1.14234 1.30231 1.21259 0.93214 0.82444 0.92233 1.85045 1.57981 1.46619 1.33439 1.78347 1.14699 1.14816 1.06381 1.78337 1.16602 0.98068 1.21040 1.21239 0.91130 0.89168 0.87874 1.84871 1.69976 1.11972 1.57109 1.21767 0.80125 0.98646 1.01147 1.22054 1.01669 0.94731 0.98593 0.94270 0.90440 0.94701 0.92205 0.94110 0.78268 0.93605 0.90447 0.93483 0.88909 0.90556 0.85370 0.85684 0.73187 0.72614 0.91164 0.89429 0.90153 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.41 37.16 0.35 -1.80 16 2 C -0.12 -1.91 4.78 -26.73 -0.13 -2.04 16 3 C 0.20 3.16 0.44 -131.78 -0.06 3.10 16 4 N -0.71 -14.19 2.99 -47.20 -0.14 -14.33 16 5 C -0.23 -5.45 8.59 -15.06 -0.13 -5.58 16 6 H 0.07 1.65 6.78 -52.48 -0.36 1.30 16 7 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 8 N -0.93 -25.20 13.07 55.49 0.73 -24.48 16 9 Si 0.90 20.91 29.55 -169.99 -5.02 15.89 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 C -0.13 -2.06 4.64 -26.61 -0.12 -2.19 16 14 C 0.12 1.99 6.18 -3.71 -0.02 1.97 16 15 N -0.59 -7.96 2.98 -173.03 -0.52 -8.48 16 16 C 0.50 6.64 7.77 -10.99 -0.09 6.56 16 17 O -0.54 -9.48 15.84 5.55 0.09 -9.39 16 18 C 0.08 0.75 4.84 -5.19 -0.03 0.73 16 19 N -0.50 -5.72 2.25 -121.34 -0.27 -5.99 16 20 C 0.42 5.32 9.15 -88.82 -0.81 4.51 16 21 O -0.43 -4.34 13.58 -18.59 -0.25 -4.59 16 22 N -0.30 -4.54 12.72 29.65 0.38 -4.16 16 23 N -0.30 -4.47 12.72 29.65 0.38 -4.09 16 24 C 0.42 5.16 9.15 -88.81 -0.81 4.35 16 25 O -0.44 -4.08 13.58 -18.58 -0.25 -4.34 16 26 C 0.11 1.21 6.05 -3.93 -0.02 1.19 16 27 C -0.13 -1.61 4.71 -26.83 -0.13 -1.73 16 28 H 0.04 0.52 6.83 -51.93 -0.35 0.16 16 29 H 0.08 1.43 7.26 -51.93 -0.38 1.05 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 1.02 7.56 -51.93 -0.39 0.63 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.38 8.24 6.61 -40.82 -0.27 7.97 16 34 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.08 1.33 7.22 -51.93 -0.37 0.96 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.82 7.62 -51.93 -0.40 1.43 16 38 H 0.08 1.30 7.00 -51.93 -0.36 0.94 16 39 H 0.13 0.84 7.68 -51.93 -0.40 0.44 16 40 H 0.13 0.83 7.95 -51.93 -0.41 0.41 16 41 H 0.41 1.49 9.06 45.56 0.41 1.90 16 42 H 0.41 2.31 9.06 45.56 0.41 2.72 16 43 H 0.07 0.53 5.93 -51.93 -0.31 0.22 16 44 H 0.09 1.20 7.02 -51.93 -0.36 0.84 16 45 H 0.08 0.95 6.64 -51.93 -0.34 0.60 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -33.87 372.94 -6.08 -39.95 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.71 Total: 9.65 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -2.09 Total: 8.74 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.55 Total: -61.53 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.42 Total: -18.32 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.87 -6.08 -39.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724890591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.442 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds