Wall clock time and date at job start Tue Mar 31 2020 22:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46985 * 2 1 4 4 N 1.46496 * 109.45287 * 305.19273 * 3 2 1 5 5 C 1.36937 * 120.00082 * 296.07049 * 4 3 2 6 6 H 1.08003 * 119.99567 * 5.51725 * 5 4 3 7 7 C 1.38814 * 120.00487 * 185.51737 * 5 4 3 8 8 N 1.31625 * 119.99641 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00249 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47433 * 120.00014 * 9 7 5 12 12 H 1.48506 * 109.47210 * 240.00137 * 9 7 5 13 13 C 1.53039 * 109.45856 * 185.22531 * 3 2 1 14 14 C 1.53198 * 109.31191 * 178.61569 * 13 3 2 15 15 N 1.46924 * 108.77505 * 54.63774 * 14 13 3 16 16 C 1.34772 * 120.63405 * 126.36901 * 15 14 13 17 17 O 1.21286 * 119.99970 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00296 * 180.02562 * 16 15 14 19 19 N 1.46508 * 109.47298 * 180.02562 * 18 16 15 20 20 C 1.36363 * 125.96311 * 90.00003 * 19 18 16 21 21 O 1.35632 * 125.99368 * 359.69676 * 20 19 18 22 22 N 1.30909 * 108.02490 * 179.97438 * 20 19 18 23 23 N 1.40124 * 107.93529 * 359.97438 * 22 20 19 24 24 C 1.30905 * 107.93958 * 0.02562 * 23 22 20 25 25 O 1.35627 * 125.98909 * 179.97438 * 24 23 22 26 26 C 1.46934 * 118.73733 * 306.64067 * 15 14 13 27 27 C 1.52761 * 109.00649 * 53.31066 * 26 15 14 28 28 H 1.08997 * 109.46422 * 294.15549 * 1 2 3 29 29 H 1.08991 * 109.46921 * 54.15891 * 1 2 3 30 30 H 1.09003 * 109.47133 * 174.15851 * 1 2 3 31 31 H 1.09004 * 109.46749 * 240.00301 * 2 1 3 32 32 H 1.09001 * 109.47174 * 120.00258 * 2 1 3 33 33 H 0.96999 * 120.00315 * 116.06659 * 4 3 2 34 34 H 0.96991 * 119.99580 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.49886 * 58.66509 * 13 3 2 36 36 H 1.09000 * 109.49853 * 298.56336 * 13 3 2 37 37 H 1.08993 * 109.58662 * 294.84974 * 14 13 3 38 38 H 1.09003 * 109.58363 * 174.41909 * 14 13 3 39 39 H 1.09002 * 109.47574 * 59.99348 * 18 16 15 40 40 H 1.09007 * 109.47126 * 299.99504 * 18 16 15 41 41 H 0.96696 * 113.99547 * 90.00160 * 21 20 19 42 42 H 0.96700 * 113.99693 * 270.02571 * 25 24 23 43 43 H 1.08997 * 109.58120 * 173.14647 * 26 15 14 44 44 H 1.08996 * 109.58367 * 293.57045 * 26 15 14 45 45 H 1.09000 * 109.56150 * 185.54998 * 27 26 15 46 46 H 1.09002 * 109.35864 * 65.49915 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.4521 2.1678 -1.1288 5 6 1.7399 1.7866 -2.4122 6 1 2.3274 0.8986 -2.5928 7 6 1.2766 2.5416 -3.4810 8 7 0.5611 3.6242 -3.2608 9 14 1.6687 2.0213 -5.2316 10 1 2.4824 0.7792 -5.2085 11 1 0.4041 1.7714 -5.9688 12 1 2.4320 3.0998 -5.9095 13 6 3.5648 1.4441 -0.1314 14 6 4.0687 2.8904 -0.1659 15 7 3.5646 3.5952 1.0206 16 6 4.4106 4.2438 1.8452 17 8 5.6007 4.2490 1.6113 18 6 3.8781 4.9616 3.0586 19 7 4.9885 5.5825 3.7852 20 6 5.4726 6.8414 3.5844 21 8 5.0144 7.7357 2.6735 22 7 6.4611 7.0335 4.4209 23 7 6.6164 5.8663 5.1806 24 6 5.7177 5.0025 4.7810 25 8 5.5427 3.7501 5.2712 26 6 2.1211 3.5745 1.2945 27 6 1.6384 2.1252 1.3095 28 1 -0.3632 0.4205 0.9377 29 1 -0.3633 0.6017 -0.8330 30 1 -0.3633 -1.0223 -0.1046 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 0.8588 2.9180 -0.9673 34 1 0.2370 4.1515 -4.0076 35 1 3.8511 0.9371 -1.0528 36 1 4.0040 0.9261 0.7211 37 1 3.7031 3.3834 -1.0665 38 1 5.1587 2.8978 -0.1595 39 1 3.3710 4.2490 3.7090 40 1 3.1738 5.7322 2.7449 41 1 4.3106 8.3097 3.0056 42 1 6.0604 3.0730 4.8144 43 1 1.9266 4.0331 2.2639 44 1 1.5935 4.1244 0.5152 45 1 0.5536 2.1029 1.4136 46 1 2.0958 1.6007 2.1484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724890591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:13 Heat of formation + Delta-G solvation = -30.224243 kcal Electronic energy + Delta-G solvation = -31167.687056 eV Core-core repulsion = 26901.759400 eV Total energy + Delta-G solvation = -4265.927656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.38827 -41.35694 -39.49360 -39.15266 -38.05773 -36.30830 -35.43176 -34.44182 -32.43900 -31.51624 -30.92276 -30.69506 -29.06768 -26.33579 -25.55744 -24.21634 -23.86894 -23.34721 -22.68766 -21.10622 -19.90239 -19.86743 -19.39356 -18.93262 -18.54611 -17.82298 -17.39453 -16.77939 -16.54849 -16.37776 -16.23255 -15.71298 -15.36652 -15.35328 -14.94641 -14.79983 -14.44322 -14.39285 -13.96993 -13.90882 -13.54606 -13.41236 -13.34403 -13.05061 -12.90608 -12.89708 -12.54666 -12.53783 -12.28598 -12.13768 -12.04740 -11.83691 -11.74104 -11.60941 -11.50189 -11.37333 -10.96463 -10.80416 -10.65469 -10.54462 -9.67603 -8.81948 -7.86087 -5.08244 0.38190 0.74205 1.12293 1.39829 1.44959 1.49605 1.54266 1.91562 2.21078 2.60552 2.81255 3.25653 3.45352 3.49669 3.83948 3.91001 3.99989 4.08192 4.14021 4.20446 4.25068 4.27000 4.51337 4.57525 4.65363 4.66333 4.71146 4.79920 4.85723 4.89414 5.10280 5.13702 5.18718 5.22756 5.32574 5.38974 5.41593 5.54988 5.65405 5.69710 5.78517 6.20061 6.35805 6.38750 6.44462 6.77640 6.97309 7.47101 8.24387 8.47330 9.37023 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.003188 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.435591 B = 8782.150501 C = 9666.139358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C 0.193 3.807 4 N -0.713 5.713 5 C -0.201 4.201 6 H 0.066 0.934 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.301 1.301 12 H -0.305 1.305 13 C -0.124 4.124 14 C 0.131 3.869 15 N -0.586 5.586 16 C 0.495 3.505 17 O -0.586 6.586 18 C 0.086 3.914 19 N -0.493 5.493 20 C 0.426 3.574 21 O -0.438 6.438 22 N -0.340 5.340 23 N -0.337 5.337 24 C 0.425 3.575 25 O -0.431 6.431 26 C 0.105 3.895 27 C -0.126 4.126 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.375 0.625 34 H 0.244 0.756 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.169 0.831 40 H 0.159 0.841 41 H 0.437 0.563 42 H 0.432 0.568 43 H 0.125 0.875 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -0.613 17.703 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C 0.103 3.897 4 N -0.354 5.354 5 C -0.334 4.334 6 H 0.084 0.916 7 C -0.260 4.260 8 N -0.614 5.614 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.229 1.229 12 H -0.233 1.233 13 C -0.164 4.164 14 C 0.008 3.992 15 N -0.318 5.318 16 C 0.282 3.718 17 O -0.467 6.467 18 C -0.039 4.039 19 N -0.213 5.213 20 C 0.115 3.885 21 O -0.242 6.242 22 N -0.184 5.184 23 N -0.181 5.181 24 C 0.114 3.886 25 O -0.234 6.234 26 C -0.017 4.017 27 C -0.165 4.165 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.209 0.791 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.186 0.814 40 H 0.177 0.823 41 H 0.300 0.700 42 H 0.294 0.706 43 H 0.142 0.858 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.669 -0.039 18.222 18.298 hybrid contribution -1.093 -0.638 -2.875 3.141 sum 0.577 -0.677 15.347 15.373 Atomic orbital electron populations 1.21584 0.95770 1.00300 1.01597 1.21882 0.96531 0.97427 1.00295 1.19853 0.90351 0.91637 0.87816 1.42528 1.55305 1.37039 1.00501 1.19290 1.24687 1.04947 0.84454 0.91567 1.25142 1.02721 0.98236 0.99932 1.69738 1.43077 1.18703 1.29903 0.85518 0.76696 0.77102 0.83179 1.19766 1.22886 1.23304 1.22184 0.98278 0.94727 1.01195 1.21253 0.97903 0.93159 0.86858 1.48083 1.08474 1.50575 1.24636 1.21154 0.86189 0.79399 0.85040 1.90749 1.17656 1.63011 1.75254 1.22125 0.87589 1.01709 0.92518 1.46670 1.30834 1.13775 1.30020 1.21323 0.92591 0.83157 0.91459 1.85010 1.59239 1.46774 1.33150 1.78234 1.16410 1.15722 1.08045 1.78222 1.18465 0.98863 1.22542 1.21296 0.90193 0.89734 0.87340 1.84857 1.70217 1.11113 1.57258 1.21930 0.78162 0.98480 1.03102 1.22043 1.02629 0.94892 0.96892 0.91724 0.94321 0.93757 0.94832 0.90994 0.79126 0.94678 0.92921 0.91062 0.93103 0.91893 0.81383 0.82321 0.70015 0.70611 0.85754 0.92016 0.89084 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.41 71.99 0.68 -3.09 16 2 C -0.12 -3.41 4.78 30.59 0.15 -3.26 16 3 C 0.19 5.62 0.44 3.63 0.00 5.62 16 4 N -0.71 -28.24 2.99 -303.24 -0.91 -29.15 16 5 C -0.20 -9.61 8.59 84.03 0.72 -8.88 16 6 H 0.07 3.18 6.78 -2.91 -0.02 3.16 16 7 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 8 N -0.96 -53.63 13.07 21.65 0.28 -53.35 16 9 Si 0.94 44.19 29.55 68.60 2.03 46.22 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 12 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 13 C -0.12 -3.71 4.64 30.67 0.14 -3.57 16 14 C 0.13 4.26 6.18 86.36 0.53 4.79 16 15 N -0.59 -14.38 2.98 -819.73 -2.44 -16.82 16 16 C 0.49 11.82 7.77 87.66 0.68 12.50 16 17 O -0.59 -19.89 15.84 -3.05 -0.05 -19.94 16 18 C 0.09 1.17 4.84 85.63 0.41 1.58 16 19 N -0.49 -9.90 2.25 -759.26 -1.71 -11.61 16 20 C 0.43 10.07 9.15 179.72 1.65 11.71 16 21 O -0.44 -7.87 13.58 -89.45 -1.21 -9.08 16 22 N -0.34 -10.16 12.72 -173.66 -2.21 -12.37 16 23 N -0.34 -9.89 12.72 -173.66 -2.21 -12.10 16 24 C 0.43 9.56 9.15 179.72 1.65 11.21 16 25 O -0.43 -6.61 13.58 -89.39 -1.21 -7.82 16 26 C 0.10 1.98 6.05 86.22 0.52 2.50 16 27 C -0.13 -2.50 4.71 30.53 0.14 -2.36 16 28 H 0.06 1.46 6.83 -2.39 -0.02 1.44 16 29 H 0.04 1.38 7.26 -2.39 -0.02 1.36 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.03 1.10 7.56 -2.39 -0.02 1.08 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.38 16.15 6.61 -92.71 -0.61 15.53 16 34 H 0.24 13.63 8.31 -92.71 -0.77 12.85 16 35 H 0.05 1.82 7.22 -2.39 -0.02 1.80 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 2.07 7.62 -2.39 -0.02 2.05 16 38 H 0.06 2.19 7.00 -2.39 -0.02 2.18 16 39 H 0.17 1.02 7.68 -2.39 -0.02 1.00 16 40 H 0.16 1.16 7.95 -2.38 -0.02 1.14 16 41 H 0.44 1.96 9.06 -74.06 -0.67 1.29 16 42 H 0.43 3.45 9.06 -74.06 -0.67 2.78 16 43 H 0.12 1.04 5.93 -2.39 -0.01 1.03 16 44 H 0.06 1.55 7.02 -2.39 -0.02 1.54 16 45 H 0.09 1.69 6.64 -2.39 -0.02 1.68 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -79.00 372.94 -2.79 -81.79 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.89 Total: 18.55 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 7.74 Total: 25.68 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -9.19 Total: -135.39 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -2.48 Total: -36.85 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -79.00 -2.79 -81.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724890591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.561 kcal (2) G-P(sol) polarization free energy of solvation -78.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds