Wall clock time and date at job start Tue Mar 31 2020 22:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39316 * 119.11606 * 2 1 4 4 C 1.36584 * 119.90605 * 180.02562 * 3 2 1 5 5 C 1.40887 * 118.15861 * 359.97438 * 4 3 2 6 6 C 1.40179 * 121.22716 * 180.02562 * 5 4 3 7 7 C 1.38547 * 119.40613 * 179.97438 * 6 5 4 8 8 C 1.47768 * 119.80437 * 179.97438 * 7 6 5 9 9 O 1.21564 * 119.99921 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99788 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99808 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.90789 * 336.25022 * 11 10 8 13 13 C 1.53781 * 113.61512 * 107.50141 * 11 10 8 14 14 C 1.53786 * 87.07996 * 89.11736 * 13 11 10 15 15 H 1.09004 * 113.68871 * 270.87673 * 14 13 11 16 16 C 1.52998 * 113.61701 * 139.98275 * 14 13 11 17 17 N 1.46492 * 109.47482 * 87.49917 * 16 14 13 18 18 C 1.36935 * 120.00376 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99724 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00063 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99887 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99941 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00122 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00115 * 22 20 18 26 26 C 1.53784 * 113.61487 * 205.00187 * 11 10 8 27 27 C 1.40624 * 120.38916 * 0.27570 * 7 6 5 28 28 C 1.35702 * 120.92344 * 359.45064 * 27 7 6 29 29 C 1.40754 * 120.11202 * 0.52515 * 28 27 7 30 30 N 1.31118 * 119.11820 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47202 * 89.99504 * 1 2 3 32 32 H 1.09000 * 109.47223 * 210.00118 * 1 2 3 33 33 H 1.08997 * 109.47275 * 330.00172 * 1 2 3 34 34 H 1.07995 * 120.04699 * 0.04130 * 3 2 1 35 35 H 1.07996 * 120.91910 * 179.97438 * 4 3 2 36 36 H 1.08001 * 120.29672 * 359.95824 * 6 5 4 37 37 H 0.96997 * 120.00361 * 0.02562 * 10 8 7 38 38 H 1.08998 * 113.61445 * 334.57363 * 13 11 10 39 39 H 1.08996 * 113.61395 * 203.66498 * 13 11 10 40 40 H 1.08999 * 109.46602 * 327.50036 * 16 14 13 41 41 H 1.08998 * 109.47239 * 207.50687 * 16 14 13 42 42 H 0.97009 * 119.99477 * 0.02562 * 17 16 14 43 43 H 0.97006 * 119.99732 * 180.02562 * 21 20 18 44 44 H 1.08994 * 113.61482 * 156.33383 * 26 11 10 45 45 H 1.08998 * 113.68642 * 25.44320 * 26 11 10 46 46 H 1.08001 * 119.53702 * 179.72737 * 27 7 6 47 47 H 1.08002 * 119.94522 * 180.27534 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0031 -0.0005 6 6 5.6331 -0.0526 -0.0005 7 6 6.2649 -1.2857 0.0001 8 6 7.7409 -1.3547 -0.0005 9 8 8.3973 -0.3314 -0.0010 10 7 8.3595 -2.5521 0.0006 11 6 9.8230 -2.6205 0.0006 12 1 10.2897 -1.7227 -0.4046 13 6 10.4186 -3.0713 1.3448 14 6 10.2980 -4.5136 0.8248 15 1 9.3395 -4.9815 1.0496 16 6 11.4914 -5.3986 1.1902 17 7 11.2664 -6.0036 2.5052 18 6 12.2069 -6.8404 3.0440 19 1 13.1149 -7.0540 2.4996 20 6 11.9933 -7.4141 4.2898 21 7 12.8976 -8.2180 4.8079 22 14 10.4232 -7.0441 5.2317 23 1 9.3828 -8.0402 4.8705 24 1 9.9462 -5.6816 4.8832 25 1 10.6923 -7.1162 6.6904 26 6 10.3787 -3.9255 -0.5938 27 6 5.5097 -2.4719 -0.0052 28 6 4.1532 -2.4350 0.0002 29 6 3.4804 -1.1987 0.0001 30 7 2.1450 -1.1455 -0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6312 2.1444 0.0007 35 1 4.0926 2.1700 -0.0010 36 1 6.2146 0.8575 -0.0012 37 1 7.8359 -3.3686 0.0013 38 1 9.7762 -2.8604 2.1997 39 1 11.4479 -2.7467 1.4971 40 1 12.3973 -4.7931 1.2190 41 1 11.6033 -6.1843 0.4430 42 1 10.4509 -5.8114 2.9943 43 1 12.7482 -8.6191 5.6784 44 1 11.3970 -3.8343 -0.9714 45 1 9.7051 -4.4048 -1.3042 46 1 6.0164 -3.4257 -0.0092 47 1 3.5888 -3.3559 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725365876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:42 Heat of formation + Delta-G solvation = 26.896686 kcal Electronic energy + Delta-G solvation = -27449.575890 eV Core-core repulsion = 23596.974446 eV Total energy + Delta-G solvation = -3852.601444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06723 -41.24621 -39.67607 -37.95937 -36.50355 -34.78841 -34.42700 -33.35171 -32.77423 -31.16581 -29.42621 -28.53716 -26.63727 -25.35999 -24.94754 -24.27483 -23.14421 -22.89768 -22.09656 -20.52632 -19.57511 -19.36103 -18.88816 -17.55215 -16.96528 -16.89787 -16.63884 -16.21859 -15.99478 -15.82496 -15.65815 -15.48786 -15.06096 -14.99238 -14.85269 -14.54164 -14.44694 -14.02501 -13.90467 -13.85479 -13.50506 -13.38003 -13.14331 -13.03099 -13.01464 -12.74422 -12.49514 -12.29278 -12.18522 -11.88048 -11.72383 -11.65216 -11.42247 -11.20500 -11.15010 -10.89322 -10.55550 -10.15576 -9.76370 -9.35965 -9.27349 -8.03247 -5.35913 -0.86424 -0.39572 0.81242 1.32362 1.36491 1.40222 1.47614 1.99521 2.20015 2.47708 3.00071 3.12027 3.27566 3.47052 3.50513 3.54413 3.57325 3.63286 3.82567 3.86253 3.92357 3.94396 3.99263 4.10700 4.22628 4.36394 4.52769 4.64038 4.70886 4.78459 4.79138 4.82703 4.85667 4.87827 4.89842 4.92997 4.96949 4.99160 5.12075 5.14748 5.17279 5.21567 5.25328 5.32200 5.48766 5.63571 5.71654 5.76406 6.21263 6.43467 6.86474 7.08470 7.08772 7.86063 8.04642 9.18426 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.002074 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.198958 B =13494.948692 C =14706.696848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.160 3.840 3 C -0.173 4.173 4 C -0.048 4.048 5 C -0.137 4.137 6 C -0.023 4.023 7 C -0.151 4.151 8 C 0.562 3.438 9 O -0.575 6.575 10 N -0.694 5.694 11 C 0.124 3.876 12 H 0.097 0.903 13 C -0.146 4.146 14 C -0.116 4.116 15 H 0.096 0.904 16 C 0.162 3.838 17 N -0.758 5.758 18 C -0.235 4.235 19 H 0.055 0.945 20 C -0.067 4.067 21 N -0.985 5.985 22 Si 0.958 3.042 23 H -0.275 1.275 24 H -0.253 1.253 25 H -0.298 1.298 26 C -0.117 4.117 27 C -0.069 4.069 28 C -0.108 4.108 29 C 0.131 3.869 30 N -0.512 5.512 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.147 0.853 37 H 0.413 0.587 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.023 0.977 41 H 0.027 0.973 42 H 0.365 0.635 43 H 0.257 0.743 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.158 0.842 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.608 21.960 -15.473 38.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 C -0.193 4.193 4 C -0.073 4.073 5 C -0.139 4.139 6 C -0.043 4.043 7 C -0.154 4.154 8 C 0.351 3.649 9 O -0.456 6.456 10 N -0.345 5.345 11 C 0.019 3.981 12 H 0.115 0.885 13 C -0.185 4.185 14 C -0.134 4.134 15 H 0.114 0.886 16 C 0.036 3.964 17 N -0.403 5.403 18 C -0.366 4.366 19 H 0.073 0.927 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.785 3.215 23 H -0.201 1.201 24 H -0.178 1.178 25 H -0.224 1.224 26 C -0.155 4.155 27 C -0.089 4.089 28 C -0.126 4.126 29 C 0.009 3.991 30 N -0.223 5.223 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.193 0.807 35 H 0.186 0.814 36 H 0.164 0.836 37 H 0.252 0.748 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.198 0.802 43 H 0.066 0.934 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.175 0.825 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -27.308 21.700 -15.500 38.168 hybrid contribution 0.136 -0.002 1.117 1.125 sum -27.172 21.698 -14.383 37.629 Atomic orbital electron populations 1.20933 0.86266 1.04813 1.04450 1.22269 0.98908 0.88245 0.89800 1.22142 0.94856 1.00268 1.02003 1.21951 0.95205 0.97448 0.92686 1.18978 0.94161 0.95322 1.05440 1.21546 0.92678 0.98102 0.91966 1.19869 0.92118 0.95132 1.08315 1.18422 0.87718 0.83453 0.75327 1.90756 1.67591 1.35413 1.51815 1.45518 1.06924 1.08347 1.73691 1.21811 0.79691 0.99710 0.96917 0.88517 1.23476 1.01637 0.96028 0.97309 1.22783 0.98652 0.94382 0.97615 0.88586 1.20821 0.96111 0.94090 0.85391 1.42728 1.21498 1.56197 1.19901 1.19081 0.98978 1.18283 1.00278 0.92666 1.25546 1.01742 0.99813 0.98749 1.69896 1.37357 1.37092 1.19202 0.85370 0.79781 0.79005 0.77379 1.20093 1.17804 1.22442 1.23231 1.03213 0.93588 0.95482 1.21117 0.93695 0.97956 0.96110 1.20869 0.94014 0.96954 1.00777 1.19286 0.89667 0.93657 0.96473 1.67958 1.08313 1.30283 1.15698 0.88735 0.90834 0.87781 0.80700 0.81374 0.83560 0.74825 0.92478 0.89383 0.95863 0.95495 0.80167 0.93381 0.87571 0.88721 0.82501 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.14 71.23 0.72 0.00 16 2 C 0.16 2.18 6.78 42.92 0.29 2.47 16 3 C -0.17 -1.70 9.64 22.14 0.21 -1.49 16 4 C -0.05 -0.58 9.89 22.53 0.22 -0.36 16 5 C -0.14 -2.47 5.74 -21.29 -0.12 -2.59 16 6 C -0.02 -0.44 9.35 22.82 0.21 -0.23 16 7 C -0.15 -2.99 5.87 -20.10 -0.12 -3.11 16 8 C 0.56 13.17 7.77 86.76 0.67 13.84 16 9 O -0.57 -17.56 15.91 -3.92 -0.06 -17.62 16 10 N -0.69 -13.42 5.21 -442.97 -2.31 -15.73 16 11 C 0.12 2.67 4.32 45.52 0.20 2.86 16 12 H 0.10 2.27 7.47 -2.39 -0.02 2.26 16 13 C -0.15 -3.79 7.43 31.12 0.23 -3.56 16 14 C -0.12 -2.99 3.63 -10.27 -0.04 -3.03 16 15 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 16 C 0.16 5.87 6.10 86.38 0.53 6.40 16 17 N -0.76 -35.26 5.41 -343.48 -1.86 -37.11 16 18 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 19 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 20 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 21 N -0.98 -63.91 13.97 21.65 0.30 -63.61 16 22 Si 0.96 45.92 27.73 68.60 1.90 47.82 16 23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.25 -11.01 6.52 99.48 0.65 -10.36 16 25 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 26 C -0.12 -2.22 7.39 31.12 0.23 -1.99 16 27 C -0.07 -1.09 9.44 22.26 0.21 -0.88 16 28 C -0.11 -1.88 9.95 22.30 0.22 -1.65 16 29 C 0.13 2.62 6.61 40.36 0.27 2.89 16 30 N -0.51 -10.05 10.23 -176.59 -1.81 -11.85 16 31 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.16 8.07 -2.39 -0.02 0.14 16 34 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.15 2.65 7.62 -2.91 -0.02 2.63 16 37 H 0.41 5.82 6.69 -92.71 -0.62 5.20 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 2.40 7.90 -2.39 -0.02 2.38 16 40 H 0.02 0.88 7.84 -2.39 -0.02 0.86 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.37 16.17 5.53 -92.70 -0.51 15.66 16 43 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 44 H 0.11 1.91 8.10 -2.39 -0.02 1.89 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.16 1.58 6.35 -2.91 -0.02 1.57 16 47 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -80.15 390.15 1.27 -78.87 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.19 Total: 25.92 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 5.29 Total: -6.70 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.67 Total: -128.30 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.06 Total: -17.62 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -80.15 1.27 -78.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725365876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.770 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds