Wall clock time and date at job start Tue Mar 31 2020 22:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 N 1.46497 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99876 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00232 * 0.02562 * 5 4 3 7 7 C 1.38818 * 119.99897 * 180.02562 * 5 4 3 8 8 N 1.31613 * 120.00363 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99682 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47491 * 90.00528 * 9 7 5 11 11 H 1.48509 * 109.46765 * 210.00338 * 9 7 5 12 12 H 1.48501 * 109.47209 * 329.99898 * 9 7 5 13 13 N 1.46500 * 109.47112 * 119.99865 * 2 1 3 14 14 C 1.34770 * 120.00283 * 294.96338 * 13 2 1 15 15 O 1.21561 * 120.00258 * 5.22214 * 14 13 2 16 16 C 1.47768 * 120.00007 * 185.21236 * 14 13 2 17 17 C 1.40625 * 119.80737 * 359.73610 * 16 14 13 18 18 C 1.35703 * 120.92499 * 179.72966 * 17 16 14 19 19 C 1.40758 * 120.10833 * 0.51479 * 18 17 16 20 20 N 1.33656 * 120.83139 * 179.77065 * 19 18 17 21 21 C 1.31110 * 121.39243 * 180.02562 * 20 19 18 22 22 C 1.39312 * 121.77440 * 359.97438 * 21 20 19 23 23 C 1.36575 * 119.90375 * 0.02562 * 22 21 20 24 24 C 1.40895 * 118.15864 * 359.97438 * 23 22 21 25 25 C 1.38551 * 119.80379 * 180.02562 * 16 14 13 26 26 C 1.52994 * 109.46918 * 240.00064 * 2 1 3 27 27 C 1.53004 * 117.49972 * 294.03902 * 26 2 1 28 28 C 1.53002 * 60.00142 * 252.51114 * 27 26 2 29 29 H 1.09002 * 109.47014 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46942 * 300.00140 * 1 2 3 31 31 H 1.08992 * 109.47294 * 59.99782 * 1 2 3 32 32 H 1.09005 * 109.47413 * 300.00182 * 3 2 1 33 33 H 1.09001 * 109.47273 * 60.00063 * 3 2 1 34 34 H 0.97003 * 119.99927 * 359.97438 * 4 3 2 35 35 H 0.96993 * 120.00780 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99699 * 114.96580 * 13 2 1 37 37 H 1.08005 * 119.53715 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.94759 * 180.28084 * 18 17 16 39 39 H 1.08008 * 119.11358 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.04860 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.92570 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.29849 * 0.02791 * 25 16 14 43 43 H 1.09000 * 115.56694 * 79.73201 * 26 2 1 44 44 H 1.09005 * 117.49514 * 145.02074 * 27 26 2 45 45 H 1.08997 * 117.50032 * 359.97438 * 27 26 2 46 46 H 1.08998 * 117.49797 * 107.48766 * 28 27 26 47 47 H 1.09004 * 117.49904 * 252.51092 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 2.6284 -0.0013 6 1 3.6497 3.5637 -0.0009 7 6 5.5779 2.6284 -0.0024 8 7 6.2360 3.7682 -0.0025 9 14 6.5118 1.0106 -0.0023 10 1 6.7583 0.5812 -1.4022 11 1 7.8100 1.1886 0.6967 12 1 5.7098 -0.0239 0.6990 13 7 2.0184 -0.6906 1.1962 14 6 1.7786 -0.1740 2.4176 15 8 1.0774 0.8122 2.5336 16 6 2.3680 -0.8065 3.6160 17 6 3.1739 -1.9506 3.4778 18 6 3.7309 -2.5465 4.5623 19 6 3.4979 -2.0284 5.8501 20 7 4.0355 -2.6065 6.9286 21 6 3.8253 -2.1335 8.1333 22 6 3.0342 -1.0078 8.3517 23 6 2.4539 -0.3677 7.2939 24 6 2.6821 -0.8789 6.0010 25 6 2.1184 -0.2724 4.8698 26 6 2.0400 -0.7212 -1.2492 27 6 1.7542 -2.2198 -1.3659 28 6 3.1736 -1.7327 -1.0678 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9900 0.6024 -0.0006 35 1 7.2059 3.7683 -0.0029 36 1 2.5143 -1.5197 1.1090 37 1 3.3553 -2.3584 2.4943 38 1 4.3510 -3.4219 4.4374 39 1 4.2784 -2.6295 8.9790 40 1 2.8793 -0.6423 9.3561 41 1 1.8372 0.5061 7.4443 42 1 1.4951 0.6033 4.9748 43 1 2.0315 -0.1343 -2.1676 44 1 1.5576 -2.6186 -2.3612 45 1 1.2033 -2.6920 -0.5525 46 1 3.5561 -1.8842 -0.0584 47 1 3.9109 -1.8110 -1.8668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732249105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:43 Heat of formation + Delta-G solvation = 73.528387 kcal Electronic energy + Delta-G solvation = -29738.376374 eV Core-core repulsion = 25887.797032 eV Total energy + Delta-G solvation = -3850.579341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11478 -40.26406 -38.08393 -36.71007 -34.68664 -33.79090 -33.44587 -31.92156 -30.78242 -30.27468 -29.88346 -26.01563 -25.07827 -24.04851 -23.32624 -22.38442 -22.28832 -21.75774 -21.24693 -19.17410 -18.67222 -18.02409 -17.57303 -16.96801 -16.28532 -15.53492 -15.11077 -14.90509 -14.68185 -14.58584 -14.44874 -14.32069 -14.08794 -13.83886 -13.62834 -13.28959 -13.14172 -12.82602 -12.50562 -12.35576 -12.21811 -12.09472 -11.68979 -11.64998 -11.61467 -11.48420 -11.11701 -10.88500 -10.80688 -10.76357 -10.25779 -10.10238 -10.04658 -9.74467 -9.56973 -9.51474 -9.02717 -8.81010 -8.71964 -8.43555 -7.11320 -5.70546 -3.03435 0.07218 0.47995 1.74549 2.34397 3.19162 3.36493 3.37872 3.42742 3.45484 3.83453 3.96634 4.02692 4.37776 4.46128 4.56557 4.62748 4.64124 4.70813 4.82655 4.89674 4.91070 4.92963 4.97375 5.18589 5.25392 5.44871 5.54284 5.58892 5.60568 5.63462 5.70086 5.73294 5.79925 5.82582 5.96574 6.01056 6.04583 6.06015 6.08921 6.12994 6.23766 6.27970 6.46141 6.48037 6.55743 6.80377 7.00784 7.65434 7.68538 8.08201 8.41332 8.48987 9.29637 10.01709 10.23294 11.48553 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.004081 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.735057 B = 6859.375376 C = 7955.202058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.196 3.804 3 C 0.146 3.854 4 N -0.749 5.749 5 C -0.233 4.233 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.279 1.279 13 N -0.715 5.715 14 C 0.566 3.434 15 O -0.522 6.522 16 C -0.125 4.125 17 C -0.074 4.074 18 C -0.099 4.099 19 C 0.141 3.859 20 N -0.479 5.479 21 C 0.137 3.863 22 C -0.183 4.183 23 C -0.044 4.044 24 C -0.112 4.112 25 C -0.025 4.025 26 C -0.139 4.139 27 C -0.181 4.181 28 C -0.185 4.185 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.360 0.640 35 H 0.258 0.742 36 H 0.393 0.607 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.687 -16.462 10.541 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.111 3.889 3 C 0.018 3.982 4 N -0.395 5.395 5 C -0.363 4.363 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.585 5.585 9 Si 0.711 3.289 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.206 1.206 13 N -0.370 5.370 14 C 0.353 3.647 15 O -0.399 6.399 16 C -0.128 4.128 17 C -0.094 4.094 18 C -0.117 4.117 19 C 0.020 3.980 20 N -0.187 5.187 21 C -0.036 4.036 22 C -0.203 4.203 23 C -0.070 4.070 24 C -0.114 4.114 25 C -0.045 4.045 26 C -0.158 4.158 27 C -0.218 4.218 28 C -0.222 4.222 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.193 0.807 35 H 0.068 0.932 36 H 0.232 0.768 37 H 0.147 0.853 38 H 0.158 0.842 39 H 0.177 0.823 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.140 0.860 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.622 -16.247 10.353 21.999 hybrid contribution 0.859 -0.716 0.060 1.120 sum -9.763 -16.963 10.412 22.169 Atomic orbital electron populations 1.22083 0.93717 1.01823 1.03526 1.20183 0.93769 0.93249 0.81736 1.21101 0.85300 0.91423 1.00384 1.42577 1.00677 1.05172 1.91070 1.19084 0.89453 0.85955 1.41851 0.89301 1.24621 0.96069 0.95991 1.02609 1.69689 1.06819 1.23724 1.58305 0.86601 0.79788 0.84890 0.77634 1.21129 1.21911 1.20565 1.46146 1.57987 1.27315 1.05549 1.17947 0.80371 0.83546 0.82831 1.90717 1.37729 1.25285 1.86191 1.20054 1.01150 0.97409 0.94237 1.20941 0.95171 0.94193 0.99116 1.20642 1.00447 1.00899 0.89735 1.18974 0.93861 0.91925 0.93234 1.68059 1.21116 1.30781 0.98701 1.23019 0.93299 0.92635 0.94605 1.21890 1.00060 0.97925 1.00404 1.21592 0.96066 0.98196 0.91125 1.18816 1.00506 0.97478 0.94603 1.21457 0.95371 0.97713 0.89922 1.22510 1.02503 0.91185 0.99567 1.23015 0.98744 0.97115 1.02919 1.22992 0.92131 1.04378 1.02691 0.92826 0.90448 0.91576 0.94931 0.92506 0.80672 0.93232 0.76832 0.85320 0.84202 0.82309 0.84306 0.83928 0.83487 0.86038 0.88596 0.88923 0.89221 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.37 37.16 0.31 -1.76 16 2 C 0.20 3.05 0.52 -131.82 -0.07 2.98 16 3 C 0.15 2.98 4.89 -4.04 -0.02 2.96 16 4 N -0.75 -18.11 5.03 -59.91 -0.30 -18.42 16 5 C -0.23 -6.81 10.47 -15.06 -0.16 -6.97 16 6 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 8 N -0.94 -30.18 13.97 55.49 0.78 -29.41 16 9 Si 0.88 22.59 27.74 -169.99 -4.71 17.87 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 12 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 13 N -0.72 -10.74 4.44 -48.57 -0.22 -10.96 16 14 C 0.57 9.45 7.17 -12.37 -0.09 9.36 16 15 O -0.52 -10.06 12.54 5.31 0.07 -9.99 16 16 C -0.13 -1.85 5.87 -104.99 -0.62 -2.47 16 17 C -0.07 -0.94 9.43 -39.59 -0.37 -1.31 16 18 C -0.10 -1.23 9.95 -39.54 -0.39 -1.63 16 19 C 0.14 1.89 6.61 -84.78 -0.56 1.33 16 20 N -0.48 -6.02 10.33 -10.92 -0.11 -6.13 16 21 C 0.14 1.29 11.14 -17.46 -0.19 1.10 16 22 C -0.18 -1.52 10.03 -39.78 -0.40 -1.92 16 23 C -0.04 -0.43 9.89 -39.18 -0.39 -0.82 16 24 C -0.11 -1.43 5.74 -106.82 -0.61 -2.04 16 25 C -0.02 -0.34 9.35 -38.74 -0.36 -0.71 16 26 C -0.14 -1.91 4.48 -90.62 -0.41 -2.32 16 27 C -0.18 -1.91 9.53 -26.73 -0.25 -2.17 16 28 C -0.18 -2.38 8.98 -26.73 -0.24 -2.62 16 29 H 0.05 0.63 7.71 -51.93 -0.40 0.23 16 30 H 0.08 1.18 6.37 -51.93 -0.33 0.85 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.30 5.99 -51.93 -0.31 0.99 16 34 H 0.36 8.36 4.29 -40.82 -0.18 8.18 16 35 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 36 H 0.39 5.06 3.64 -40.82 -0.15 4.91 16 37 H 0.13 1.35 6.36 -52.48 -0.33 1.02 16 38 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.15 1.95 7.62 -52.49 -0.40 1.55 16 43 H 0.12 1.73 8.14 -51.93 -0.42 1.30 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 0.90 7.99 -51.93 -0.42 0.48 16 46 H 0.09 1.15 5.95 -51.93 -0.31 0.84 16 47 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -35.94 377.93 -9.95 -45.89 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -6.22 Total: 14.48 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -4.92 Total: -9.03 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: 0.15 Total: -64.91 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.94 -9.95 -45.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732249105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.416 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds