Wall clock time and date at job start Tue Mar 31 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 N 1.46497 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99876 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00232 * 0.02562 * 5 4 3 7 7 C 1.38818 * 119.99897 * 180.02562 * 5 4 3 8 8 N 1.31613 * 120.00363 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99682 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47491 * 90.00528 * 9 7 5 11 11 H 1.48509 * 109.46765 * 210.00338 * 9 7 5 12 12 H 1.48501 * 109.47209 * 329.99898 * 9 7 5 13 13 N 1.46500 * 109.47112 * 119.99865 * 2 1 3 14 14 C 1.34770 * 120.00283 * 294.96338 * 13 2 1 15 15 O 1.21561 * 120.00258 * 5.22214 * 14 13 2 16 16 C 1.47768 * 120.00007 * 185.21236 * 14 13 2 17 17 C 1.40625 * 119.80737 * 359.73610 * 16 14 13 18 18 C 1.35703 * 120.92499 * 179.72966 * 17 16 14 19 19 C 1.40758 * 120.10833 * 0.51479 * 18 17 16 20 20 N 1.33656 * 120.83139 * 179.77065 * 19 18 17 21 21 C 1.31110 * 121.39243 * 180.02562 * 20 19 18 22 22 C 1.39312 * 121.77440 * 359.97438 * 21 20 19 23 23 C 1.36575 * 119.90375 * 0.02562 * 22 21 20 24 24 C 1.40895 * 118.15864 * 359.97438 * 23 22 21 25 25 C 1.38551 * 119.80379 * 180.02562 * 16 14 13 26 26 C 1.52994 * 109.46918 * 240.00064 * 2 1 3 27 27 C 1.53004 * 117.49972 * 294.03902 * 26 2 1 28 28 C 1.53002 * 60.00142 * 252.51114 * 27 26 2 29 29 H 1.09002 * 109.47014 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46942 * 300.00140 * 1 2 3 31 31 H 1.08992 * 109.47294 * 59.99782 * 1 2 3 32 32 H 1.09005 * 109.47413 * 300.00182 * 3 2 1 33 33 H 1.09001 * 109.47273 * 60.00063 * 3 2 1 34 34 H 0.97003 * 119.99927 * 359.97438 * 4 3 2 35 35 H 0.96993 * 120.00780 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99699 * 114.96580 * 13 2 1 37 37 H 1.08005 * 119.53715 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.94759 * 180.28084 * 18 17 16 39 39 H 1.08008 * 119.11358 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.04860 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.92570 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.29849 * 0.02791 * 25 16 14 43 43 H 1.09000 * 115.56694 * 79.73201 * 26 2 1 44 44 H 1.09005 * 117.49514 * 145.02074 * 27 26 2 45 45 H 1.08997 * 117.50032 * 359.97438 * 27 26 2 46 46 H 1.08998 * 117.49797 * 107.48766 * 28 27 26 47 47 H 1.09004 * 117.49904 * 252.51092 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 2.6284 -0.0013 6 1 3.6497 3.5637 -0.0009 7 6 5.5779 2.6284 -0.0024 8 7 6.2360 3.7682 -0.0025 9 14 6.5118 1.0106 -0.0023 10 1 6.7583 0.5812 -1.4022 11 1 7.8100 1.1886 0.6967 12 1 5.7098 -0.0239 0.6990 13 7 2.0184 -0.6906 1.1962 14 6 1.7786 -0.1740 2.4176 15 8 1.0774 0.8122 2.5336 16 6 2.3680 -0.8065 3.6160 17 6 3.1739 -1.9506 3.4778 18 6 3.7309 -2.5465 4.5623 19 6 3.4979 -2.0284 5.8501 20 7 4.0355 -2.6065 6.9286 21 6 3.8253 -2.1335 8.1333 22 6 3.0342 -1.0078 8.3517 23 6 2.4539 -0.3677 7.2939 24 6 2.6821 -0.8789 6.0010 25 6 2.1184 -0.2724 4.8698 26 6 2.0400 -0.7212 -1.2492 27 6 1.7542 -2.2198 -1.3659 28 6 3.1736 -1.7327 -1.0678 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9900 0.6024 -0.0006 35 1 7.2059 3.7683 -0.0029 36 1 2.5143 -1.5197 1.1090 37 1 3.3553 -2.3584 2.4943 38 1 4.3510 -3.4219 4.4374 39 1 4.2784 -2.6295 8.9790 40 1 2.8793 -0.6423 9.3561 41 1 1.8372 0.5061 7.4443 42 1 1.4951 0.6033 4.9748 43 1 2.0315 -0.1343 -2.1676 44 1 1.5576 -2.6186 -2.3612 45 1 1.2033 -2.6920 -0.5525 46 1 3.5561 -1.8842 -0.0584 47 1 3.9109 -1.8110 -1.8668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732249105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:42 Heat of formation + Delta-G solvation = 49.998731 kcal Electronic energy + Delta-G solvation = -29739.396696 eV Core-core repulsion = 25887.797032 eV Total energy + Delta-G solvation = -3851.599664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.09415 -41.37320 -39.20003 -37.70491 -36.42286 -34.99914 -34.50822 -33.56261 -32.40193 -31.20909 -30.97087 -27.72196 -26.09694 -24.91307 -24.63310 -23.76087 -23.23841 -23.18866 -22.29945 -20.54288 -19.71687 -19.65375 -18.88975 -17.84042 -17.20550 -16.93520 -16.53322 -16.14950 -16.04775 -15.66262 -15.57905 -15.43355 -15.31520 -14.96884 -14.90813 -14.52881 -14.25964 -14.09448 -14.03540 -13.91395 -13.52028 -13.14735 -13.06350 -12.89354 -12.66227 -12.52382 -12.48424 -12.37746 -12.21095 -12.08292 -11.85022 -11.63998 -11.21100 -11.11668 -11.06776 -10.72919 -10.55761 -10.08404 -9.84707 -9.37683 -9.25637 -8.04586 -5.35923 -0.83366 -0.38842 0.84218 1.28447 1.35019 1.38703 1.41714 2.02602 2.33121 2.44633 2.87400 3.04565 3.22242 3.26288 3.49270 3.51311 3.58770 3.65244 3.69520 3.87723 3.92598 3.96870 3.99078 4.01672 4.16103 4.27269 4.48553 4.50231 4.52851 4.68791 4.72814 4.79927 4.84455 4.85678 4.91440 4.94013 4.96818 5.02595 5.11044 5.14413 5.19488 5.23618 5.28080 5.35587 5.44648 5.59916 5.71800 5.73878 6.18940 6.49812 6.84191 7.07038 7.18894 7.82547 8.07208 9.17742 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.004081 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.735057 B = 6859.375376 C = 7955.202058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.204 3.796 3 C 0.143 3.857 4 N -0.743 5.743 5 C -0.230 4.230 6 H 0.047 0.953 7 C -0.064 4.064 8 N -0.986 5.986 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.298 1.298 12 H -0.251 1.251 13 N -0.707 5.707 14 C 0.560 3.440 15 O -0.560 6.560 16 C -0.150 4.150 17 C -0.078 4.078 18 C -0.102 4.102 19 C 0.122 3.878 20 N -0.506 5.506 21 C 0.139 3.861 22 C -0.169 4.169 23 C -0.056 4.056 24 C -0.129 4.129 25 C -0.032 4.032 26 C -0.164 4.164 27 C -0.142 4.142 28 C -0.198 4.198 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.369 0.631 35 H 0.257 0.743 36 H 0.406 0.594 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.196 0.804 40 H 0.179 0.821 41 H 0.162 0.838 42 H 0.141 0.859 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.090 0.910 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.604 -20.287 11.652 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.119 3.881 3 C 0.016 3.984 4 N -0.389 5.389 5 C -0.361 4.361 6 H 0.065 0.935 7 C -0.255 4.255 8 N -0.637 5.637 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.225 1.225 12 H -0.175 1.175 13 N -0.362 5.362 14 C 0.348 3.652 15 O -0.439 6.439 16 C -0.153 4.153 17 C -0.098 4.098 18 C -0.120 4.120 19 C 0.002 3.998 20 N -0.215 5.215 21 C -0.033 4.033 22 C -0.189 4.189 23 C -0.082 4.082 24 C -0.131 4.131 25 C -0.052 4.052 26 C -0.183 4.183 27 C -0.178 4.178 28 C -0.236 4.236 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.203 0.797 35 H 0.066 0.934 36 H 0.246 0.754 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.213 0.787 40 H 0.196 0.804 41 H 0.180 0.820 42 H 0.159 0.841 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.126 0.874 46 H 0.108 0.892 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.576 -20.126 11.449 25.456 hybrid contribution 0.777 0.586 -0.105 0.979 sum -9.799 -19.540 11.344 24.628 Atomic orbital electron populations 1.22017 0.92126 1.03309 1.02933 1.19997 0.94854 0.90236 0.83046 1.21171 0.83191 0.95369 0.98679 1.42440 1.02077 1.03712 1.90695 1.19027 0.89833 0.86401 1.40884 0.93467 1.25474 0.97011 1.00216 1.02836 1.69889 1.07032 1.26675 1.60065 0.85476 0.77815 0.80478 0.78560 1.19444 1.22534 1.17542 1.46083 1.57722 1.27515 1.04893 1.18366 0.79877 0.83142 0.83812 1.90697 1.39469 1.26974 1.86798 1.20043 1.02812 0.98838 0.93574 1.21074 0.94852 0.93549 1.00301 1.20894 1.00344 1.01282 0.89512 1.19251 0.94235 0.92292 0.94066 1.68118 1.22175 1.31666 0.99509 1.23773 0.92286 0.92587 0.94634 1.22338 0.98071 0.96724 1.01728 1.21944 0.96652 0.99092 0.90492 1.19001 1.00906 0.97831 0.95400 1.21540 0.95494 0.97684 0.90502 1.22401 1.04809 0.93038 0.98048 1.23096 0.96508 0.93622 1.04594 1.23115 0.93219 1.04301 1.02921 0.90178 0.92694 0.90560 0.95296 0.95417 0.79728 0.93431 0.75374 0.83253 0.82460 0.78707 0.80354 0.82003 0.84132 0.86776 0.86491 0.87413 0.89156 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 8.37 71.98 0.60 -3.23 16 2 C 0.20 6.23 0.52 3.60 0.00 6.23 16 3 C 0.14 6.06 4.89 86.38 0.42 6.48 16 4 N -0.74 -36.48 5.03 -343.45 -1.73 -38.21 16 5 C -0.23 -13.96 10.47 84.03 0.88 -13.08 16 6 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 7 C -0.06 -3.95 5.50 84.86 0.47 -3.49 16 8 N -0.99 -65.63 13.97 21.65 0.30 -65.33 16 9 Si 0.95 46.60 27.74 68.60 1.90 48.50 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 12 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 13 N -0.71 -20.62 4.44 -425.85 -1.89 -22.51 16 14 C 0.56 19.03 7.17 86.76 0.62 19.66 16 15 O -0.56 -22.70 12.54 -3.91 -0.05 -22.75 16 16 C -0.15 -4.46 5.87 -20.10 -0.12 -4.58 16 17 C -0.08 -1.90 9.43 22.27 0.21 -1.69 16 18 C -0.10 -2.42 9.95 22.30 0.22 -2.20 16 19 C 0.12 3.15 6.61 40.35 0.27 3.42 16 20 N -0.51 -11.74 10.33 -188.45 -1.95 -13.69 16 21 C 0.14 2.19 11.14 85.06 0.95 3.14 16 22 C -0.17 -2.26 10.03 22.14 0.22 -2.04 16 23 C -0.06 -1.02 9.89 22.53 0.22 -0.80 16 24 C -0.13 -3.25 5.74 -21.29 -0.12 -3.37 16 25 C -0.03 -0.92 9.35 22.82 0.21 -0.71 16 26 C -0.16 -4.18 4.48 -10.79 -0.05 -4.22 16 27 C -0.14 -2.42 9.53 30.60 0.29 -2.13 16 28 C -0.20 -4.49 8.98 30.60 0.27 -4.21 16 29 H 0.08 1.68 7.71 -2.39 -0.02 1.66 16 30 H 0.05 1.71 6.37 -2.39 -0.02 1.70 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.03 1.36 5.99 -2.39 -0.01 1.34 16 34 H 0.37 16.76 4.29 -92.71 -0.40 16.36 16 35 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 36 H 0.41 9.58 3.64 -92.70 -0.34 9.25 16 37 H 0.15 2.81 6.36 -2.91 -0.02 2.79 16 38 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 39 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 42 H 0.14 4.00 7.62 -2.91 -0.02 3.98 16 43 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.11 1.57 7.99 -2.39 -0.02 1.55 16 46 H 0.09 2.01 5.95 -2.39 -0.01 2.00 16 47 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -82.79 377.93 2.39 -80.40 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: 0.22 Total: 40.40 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.58 Total: -6.82 kcal Atomic # 7 Polarization: -134.47 SS G_CDS: -5.26 Total: -139.73 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Total: -82.79 2.39 -80.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732249105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.395 kcal (2) G-P(sol) polarization free energy of solvation -82.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds