Wall clock time and date at job start Tue Mar 31 2020 22:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47238 * 2 1 4 4 N 1.46504 * 109.47056 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99605 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00133 * 0.02562 * 5 4 3 7 7 C 1.38809 * 119.99964 * 180.02562 * 5 4 3 8 8 N 1.31618 * 119.99933 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00143 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47245 * 60.00172 * 9 7 5 11 11 H 1.48502 * 109.47135 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46827 * 299.99943 * 9 7 5 13 13 N 1.46506 * 109.47435 * 119.99997 * 2 1 3 14 14 C 1.34771 * 119.99938 * 298.86631 * 13 2 1 15 15 O 1.21595 * 120.00276 * 5.11858 * 14 13 2 16 16 C 1.47571 * 120.00216 * 185.12032 * 14 13 2 17 17 C 1.38701 * 120.43233 * 354.29203 * 16 14 13 18 18 C 1.38995 * 120.75211 * 180.23506 * 17 16 14 19 19 C 1.36346 * 121.19141 * 359.47226 * 18 17 16 20 20 C 1.40354 * 119.92688 * 0.52427 * 19 18 17 21 21 C 1.40680 * 122.10547 * 179.76275 * 20 19 18 22 22 C 1.36265 * 118.66844 * 179.97438 * 21 20 19 23 23 N 1.32511 * 121.84121 * 0.02562 * 22 21 20 24 24 C 1.31317 * 122.71765 * 359.95650 * 23 22 21 25 25 C 1.40136 * 119.91720 * 0.04416 * 24 23 22 26 26 C 1.53001 * 109.47434 * 239.99852 * 2 1 3 27 27 C 1.53004 * 117.49753 * 12.35964 * 26 2 1 28 28 C 1.52999 * 117.49871 * 303.70129 * 26 2 1 29 29 H 1.08995 * 109.47219 * 299.99735 * 1 2 3 30 30 H 1.08998 * 109.47386 * 60.00005 * 1 2 3 31 31 H 1.09006 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46928 * 300.00275 * 3 2 1 33 33 H 1.09008 * 109.46640 * 60.00205 * 3 2 1 34 34 H 0.96997 * 120.00054 * 0.02562 * 4 3 2 35 35 H 0.97005 * 120.00148 * 179.97438 * 8 7 5 36 36 H 0.96997 * 120.00006 * 118.86217 * 13 2 1 37 37 H 1.08001 * 119.62429 * 359.95341 * 17 16 14 38 38 H 1.07997 * 119.40617 * 179.72059 * 18 17 16 39 39 H 1.08002 * 120.03841 * 180.23637 * 19 18 17 40 40 H 1.07997 * 120.66842 * 359.97438 * 21 20 19 41 41 H 1.07995 * 119.08341 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.03938 * 180.02562 * 24 23 22 43 43 H 1.08998 * 115.55177 * 158.02332 * 26 2 1 44 44 H 1.09001 * 117.49402 * 359.97438 * 27 26 2 45 45 H 1.08990 * 117.49986 * 145.01698 * 27 26 2 46 46 H 1.09003 * 117.49212 * 214.97545 * 28 26 2 47 47 H 1.08992 * 117.50046 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1897 2.6284 0.0002 6 1 3.6497 3.5637 -0.0002 7 6 5.5778 2.6285 0.0002 8 7 6.2359 1.4886 0.0002 9 14 6.5118 4.2462 0.0004 10 1 6.1530 5.0248 1.2129 11 1 7.9718 3.9749 -0.0002 12 1 6.1530 5.0250 -1.2121 13 7 2.0184 -0.6906 1.1962 14 6 1.7118 -0.2170 2.4201 15 8 0.9544 0.7274 2.5345 16 6 2.2953 -0.8444 3.6216 17 6 3.0650 -1.9930 3.5109 18 6 3.6137 -2.5922 4.6387 19 6 3.4221 -2.0660 5.8818 20 6 2.6498 -0.9047 6.0392 21 6 2.4185 -0.3258 7.3003 22 6 1.6581 0.8027 7.3721 23 7 1.1349 1.3630 6.2913 24 6 1.3103 0.8768 5.0841 25 6 2.0770 -0.2820 4.9020 26 6 2.0400 -0.7213 -1.2492 27 6 1.0256 -1.0237 -2.3540 28 6 1.5656 -2.1576 -1.4788 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 3.9900 0.6025 0.0006 35 1 7.2059 1.4886 -0.0002 36 1 2.5623 -1.4888 1.1073 37 1 3.2362 -2.4292 2.5379 38 1 4.2058 -3.4886 4.5278 39 1 3.8604 -2.5448 6.7450 40 1 2.8354 -0.7668 8.1937 41 1 1.4760 1.2525 8.3369 42 1 0.8639 1.3691 4.2328 43 1 3.0565 -0.4722 -1.5538 44 1 -0.0051 -0.7092 -2.1906 45 1 1.3749 -0.9740 -3.3852 46 1 2.2700 -2.8534 -1.9348 47 1 0.8905 -2.5889 -0.7398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732250583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:34 Heat of formation + Delta-G solvation = 71.715028 kcal Electronic energy + Delta-G solvation = -29892.908570 eV Core-core repulsion = 26042.250596 eV Total energy + Delta-G solvation = -3850.657974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.07575 -39.88880 -37.91284 -37.11518 -34.72116 -33.61053 -32.94597 -31.32495 -31.16615 -30.01982 -29.08522 -25.90137 -24.78022 -23.83401 -23.45670 -22.92945 -22.33997 -22.08012 -20.35073 -18.99290 -18.01585 -17.68171 -17.15228 -16.60781 -16.45353 -15.50314 -15.42070 -14.96131 -14.86075 -14.66421 -14.49250 -13.99877 -13.84329 -13.66633 -13.35617 -13.18104 -12.76054 -12.66286 -12.36571 -12.13480 -12.10784 -12.03639 -11.91046 -11.55637 -11.41449 -11.06866 -10.84206 -10.78707 -10.74286 -10.20583 -10.12738 -10.10351 -9.86011 -9.65629 -9.50556 -9.16750 -9.15656 -8.77885 -8.70309 -8.08011 -6.83736 -5.72777 -2.98812 0.12664 0.88424 1.67856 2.78281 3.17292 3.46767 3.48130 3.51347 3.53295 4.03830 4.16679 4.48002 4.54092 4.63401 4.65642 4.73994 4.78695 4.87649 4.92697 5.03682 5.06085 5.15707 5.25196 5.32752 5.43401 5.54482 5.63264 5.67248 5.69953 5.71032 5.76362 5.91228 5.94937 6.00398 6.07746 6.12816 6.19078 6.22923 6.25915 6.28052 6.44914 6.52813 6.63094 6.68040 6.80481 6.90081 7.07778 7.75455 7.79493 8.10157 8.46855 8.47741 9.58536 10.15783 10.51589 11.50346 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008153 B = 0.004575 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.455673 B = 6118.966596 C = 7853.482926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.202 3.798 3 C 0.143 3.857 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 N -0.699 5.699 14 C 0.570 3.430 15 O -0.528 6.528 16 C -0.088 4.088 17 C -0.080 4.080 18 C -0.104 4.104 19 C -0.094 4.094 20 C -0.029 4.029 21 C -0.168 4.168 22 C 0.077 3.923 23 N -0.493 5.493 24 C 0.151 3.849 25 C -0.078 4.078 26 C -0.151 4.151 27 C -0.171 4.171 28 C -0.184 4.184 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.046 0.954 34 H 0.382 0.618 35 H 0.253 0.747 36 H 0.397 0.603 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.150 0.850 42 H 0.202 0.798 43 H 0.123 0.877 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 -13.333 7.455 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.117 3.883 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.586 5.586 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.348 5.348 14 C 0.358 3.642 15 O -0.407 6.407 16 C -0.093 4.093 17 C -0.099 4.099 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.035 4.035 21 C -0.187 4.187 22 C -0.067 4.067 23 N -0.201 5.201 24 C -0.018 4.018 25 C -0.081 4.081 26 C -0.169 4.169 27 C -0.208 4.208 28 C -0.222 4.222 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.216 0.784 35 H 0.063 0.937 36 H 0.233 0.767 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.218 0.782 43 H 0.141 0.859 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.564 -11.708 7.766 17.578 hybrid contribution 1.939 -0.631 -0.105 2.042 sum -8.625 -12.339 7.662 16.893 Atomic orbital electron populations 1.22311 0.94489 1.01695 1.03759 1.20096 0.93242 0.93225 0.81778 1.21070 0.86509 0.91471 0.99450 1.42229 0.99130 1.06182 1.89476 1.19185 0.88995 0.86196 1.41807 0.91378 1.24656 0.96295 0.96644 1.03390 1.69631 1.06672 1.23836 1.58473 0.86306 0.78915 0.83386 0.77870 1.21377 1.21799 1.21326 1.45831 1.53793 1.30304 1.04917 1.17855 0.80677 0.82867 0.82849 1.90492 1.36472 1.28132 1.85572 1.19990 1.00010 0.96434 0.92906 1.21423 0.94753 0.94338 0.99358 1.20884 0.99091 1.00174 0.92145 1.21106 0.97309 0.94648 0.98127 1.18145 0.96824 0.95406 0.93101 1.21824 1.01726 0.98386 0.96814 1.22288 0.93945 0.92946 0.97495 1.67682 1.21218 1.32104 0.99139 1.24677 0.90968 0.90516 0.95672 1.18853 0.99592 0.97409 0.92236 1.22579 1.00885 0.96879 0.96591 1.23058 0.99234 1.02647 0.95887 1.22964 1.04047 0.91562 1.03583 0.89963 0.91517 0.92956 0.95599 0.93619 0.78441 0.93699 0.76749 0.85003 0.84913 0.84933 0.84658 0.83302 0.78203 0.85904 0.88189 0.88853 0.88904 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 7.05 37.15 0.26 -2.02 16 2 C 0.20 3.19 0.54 -131.82 -0.07 3.12 16 3 C 0.14 2.97 4.95 -4.04 -0.02 2.95 16 4 N -0.73 -18.04 5.03 -59.90 -0.30 -18.34 16 5 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.94 -28.00 13.06 55.49 0.72 -27.28 16 9 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 N -0.70 -10.53 4.68 -48.62 -0.23 -10.76 16 14 C 0.57 9.52 7.14 -12.46 -0.09 9.43 16 15 O -0.53 -9.87 9.70 5.28 0.05 -9.82 16 16 C -0.09 -1.35 5.90 -104.66 -0.62 -1.97 16 17 C -0.08 -0.97 9.52 -39.13 -0.37 -1.35 16 18 C -0.10 -1.08 9.93 -39.98 -0.40 -1.48 16 19 C -0.09 -1.01 9.79 -39.47 -0.39 -1.40 16 20 C -0.03 -0.40 5.74 -106.84 -0.61 -1.01 16 21 C -0.17 -1.99 9.88 -39.37 -0.39 -2.38 16 22 C 0.08 1.01 11.07 -17.97 -0.20 0.81 16 23 N -0.49 -8.05 10.30 -13.22 -0.14 -8.19 16 24 C 0.15 2.58 10.49 -17.06 -0.18 2.40 16 25 C -0.08 -1.24 5.76 -106.59 -0.61 -1.85 16 26 C -0.15 -2.18 4.86 -90.62 -0.44 -2.62 16 27 C -0.17 -2.03 9.63 -26.69 -0.26 -2.29 16 28 C -0.18 -2.06 9.74 -26.69 -0.26 -2.32 16 29 H 0.08 1.28 6.08 -51.93 -0.32 0.97 16 30 H 0.07 0.86 6.80 -51.93 -0.35 0.50 16 31 H 0.05 0.63 7.00 -51.93 -0.36 0.27 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 1.05 6.26 -51.92 -0.33 0.72 16 34 H 0.38 9.70 6.63 -40.82 -0.27 9.43 16 35 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.40 5.16 6.46 -40.82 -0.26 4.90 16 37 H 0.13 1.31 6.40 -52.49 -0.34 0.98 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.20 3.65 4.97 -52.49 -0.26 3.39 16 43 H 0.12 2.16 7.09 -51.93 -0.37 1.79 16 44 H 0.10 1.10 5.88 -51.93 -0.31 0.80 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 0.94 7.37 -51.93 -0.38 0.56 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -33.35 374.87 -10.20 -43.55 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -6.05 Total: 16.43 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -4.89 Total: -9.17 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 0.06 Total: -64.57 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.05 Total: -9.82 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.35 -10.20 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732250583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.268 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds