Wall clock time and date at job start Tue Mar 31 2020 22:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47238 * 2 1 4 4 N 1.46504 * 109.47056 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99605 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00133 * 0.02562 * 5 4 3 7 7 C 1.38809 * 119.99964 * 180.02562 * 5 4 3 8 8 N 1.31618 * 119.99933 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00143 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47245 * 60.00172 * 9 7 5 11 11 H 1.48502 * 109.47135 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46827 * 299.99943 * 9 7 5 13 13 N 1.46506 * 109.47435 * 119.99997 * 2 1 3 14 14 C 1.34771 * 119.99938 * 298.86631 * 13 2 1 15 15 O 1.21595 * 120.00276 * 5.11858 * 14 13 2 16 16 C 1.47571 * 120.00216 * 185.12032 * 14 13 2 17 17 C 1.38701 * 120.43233 * 354.29203 * 16 14 13 18 18 C 1.38995 * 120.75211 * 180.23506 * 17 16 14 19 19 C 1.36346 * 121.19141 * 359.47226 * 18 17 16 20 20 C 1.40354 * 119.92688 * 0.52427 * 19 18 17 21 21 C 1.40680 * 122.10547 * 179.76275 * 20 19 18 22 22 C 1.36265 * 118.66844 * 179.97438 * 21 20 19 23 23 N 1.32511 * 121.84121 * 0.02562 * 22 21 20 24 24 C 1.31317 * 122.71765 * 359.95650 * 23 22 21 25 25 C 1.40136 * 119.91720 * 0.04416 * 24 23 22 26 26 C 1.53001 * 109.47434 * 239.99852 * 2 1 3 27 27 C 1.53004 * 117.49753 * 12.35964 * 26 2 1 28 28 C 1.52999 * 117.49871 * 303.70129 * 26 2 1 29 29 H 1.08995 * 109.47219 * 299.99735 * 1 2 3 30 30 H 1.08998 * 109.47386 * 60.00005 * 1 2 3 31 31 H 1.09006 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46928 * 300.00275 * 3 2 1 33 33 H 1.09008 * 109.46640 * 60.00205 * 3 2 1 34 34 H 0.96997 * 120.00054 * 0.02562 * 4 3 2 35 35 H 0.97005 * 120.00148 * 179.97438 * 8 7 5 36 36 H 0.96997 * 120.00006 * 118.86217 * 13 2 1 37 37 H 1.08001 * 119.62429 * 359.95341 * 17 16 14 38 38 H 1.07997 * 119.40617 * 179.72059 * 18 17 16 39 39 H 1.08002 * 120.03841 * 180.23637 * 19 18 17 40 40 H 1.07997 * 120.66842 * 359.97438 * 21 20 19 41 41 H 1.07995 * 119.08341 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.03938 * 180.02562 * 24 23 22 43 43 H 1.08998 * 115.55177 * 158.02332 * 26 2 1 44 44 H 1.09001 * 117.49402 * 359.97438 * 27 26 2 45 45 H 1.08990 * 117.49986 * 145.01698 * 27 26 2 46 46 H 1.09003 * 117.49212 * 214.97545 * 28 26 2 47 47 H 1.08992 * 117.50046 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1897 2.6284 0.0002 6 1 3.6497 3.5637 -0.0002 7 6 5.5778 2.6285 0.0002 8 7 6.2359 1.4886 0.0002 9 14 6.5118 4.2462 0.0004 10 1 6.1530 5.0248 1.2129 11 1 7.9718 3.9749 -0.0002 12 1 6.1530 5.0250 -1.2121 13 7 2.0184 -0.6906 1.1962 14 6 1.7118 -0.2170 2.4201 15 8 0.9544 0.7274 2.5345 16 6 2.2953 -0.8444 3.6216 17 6 3.0650 -1.9930 3.5109 18 6 3.6137 -2.5922 4.6387 19 6 3.4221 -2.0660 5.8818 20 6 2.6498 -0.9047 6.0392 21 6 2.4185 -0.3258 7.3003 22 6 1.6581 0.8027 7.3721 23 7 1.1349 1.3630 6.2913 24 6 1.3103 0.8768 5.0841 25 6 2.0770 -0.2820 4.9020 26 6 2.0400 -0.7213 -1.2492 27 6 1.0256 -1.0237 -2.3540 28 6 1.5656 -2.1576 -1.4788 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 3.9900 0.6025 0.0006 35 1 7.2059 1.4886 -0.0002 36 1 2.5623 -1.4888 1.1073 37 1 3.2362 -2.4292 2.5379 38 1 4.2058 -3.4886 4.5278 39 1 3.8604 -2.5448 6.7450 40 1 2.8354 -0.7668 8.1937 41 1 1.4760 1.2525 8.3369 42 1 0.8639 1.3691 4.2328 43 1 3.0565 -0.4722 -1.5538 44 1 -0.0051 -0.7092 -2.1906 45 1 1.3749 -0.9740 -3.3852 46 1 2.2700 -2.8534 -1.9348 47 1 0.8905 -2.5889 -0.7398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732250583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:33 Heat of formation + Delta-G solvation = 50.485452 kcal Electronic energy + Delta-G solvation = -29893.829154 eV Core-core repulsion = 26042.250596 eV Total energy + Delta-G solvation = -3851.578558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.15701 -41.07218 -39.06742 -38.13605 -36.37944 -35.11369 -34.04419 -33.03735 -32.15525 -31.50223 -30.19639 -27.58776 -25.94698 -25.12303 -24.45058 -24.32785 -23.84285 -23.10437 -21.47174 -20.27720 -19.26043 -19.07909 -18.68332 -17.64244 -17.49613 -16.93068 -16.60066 -16.39205 -16.11638 -16.01823 -15.62952 -15.38593 -15.12154 -14.93335 -14.59990 -14.56874 -14.19565 -13.77139 -13.69118 -13.65999 -13.23198 -13.12802 -13.02564 -12.93173 -12.79758 -12.51660 -12.45585 -12.24619 -12.02150 -12.01552 -11.76627 -11.22230 -11.15314 -11.05965 -10.91845 -10.63620 -10.29261 -10.15327 -10.02130 -9.06606 -8.94562 -7.96242 -5.21544 -0.88177 -0.10238 0.61766 1.42015 1.44702 1.50428 1.75640 2.03708 2.32672 2.53691 3.01912 3.11247 3.36213 3.49956 3.55639 3.64093 3.74554 3.77606 3.86835 3.91682 3.95899 3.97937 4.18239 4.20261 4.25896 4.39856 4.46909 4.54868 4.67934 4.74532 4.80037 4.80662 4.87721 4.88595 4.92237 4.99379 5.04586 5.09405 5.14173 5.21175 5.32427 5.34470 5.34605 5.45041 5.49144 5.63615 5.70738 5.81592 6.26679 6.60210 7.01551 7.27233 7.34390 8.08825 8.37809 9.26473 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008153 B = 0.004575 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.455673 B = 6118.966596 C = 7853.482926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.212 3.788 3 C 0.144 3.856 4 N -0.727 5.727 5 C -0.244 4.244 6 H 0.061 0.939 7 C -0.066 4.066 8 N -0.961 5.961 9 Si 0.963 3.037 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.692 5.692 14 C 0.561 3.439 15 O -0.559 6.559 16 C -0.130 4.130 17 C -0.066 4.066 18 C -0.107 4.107 19 C -0.078 4.078 20 C -0.052 4.052 21 C -0.144 4.144 22 C 0.050 3.950 23 N -0.516 5.516 24 C 0.113 3.887 25 C -0.096 4.096 26 C -0.176 4.176 27 C -0.163 4.163 28 C -0.155 4.155 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.378 0.622 35 H 0.251 0.749 36 H 0.407 0.593 37 H 0.152 0.848 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.179 0.821 42 H 0.174 0.826 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.703 -16.376 8.497 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.126 3.874 3 C 0.017 3.983 4 N -0.371 5.371 5 C -0.376 4.376 6 H 0.079 0.921 7 C -0.259 4.259 8 N -0.611 5.611 9 Si 0.793 3.207 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.343 5.343 14 C 0.350 3.650 15 O -0.440 6.440 16 C -0.135 4.135 17 C -0.084 4.084 18 C -0.126 4.126 19 C -0.095 4.095 20 C -0.058 4.058 21 C -0.163 4.163 22 C -0.093 4.093 23 N -0.225 5.225 24 C -0.056 4.056 25 C -0.098 4.098 26 C -0.195 4.195 27 C -0.200 4.200 28 C -0.191 4.191 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.211 0.789 35 H 0.060 0.940 36 H 0.244 0.756 37 H 0.170 0.830 38 H 0.192 0.808 39 H 0.193 0.807 40 H 0.199 0.801 41 H 0.196 0.804 42 H 0.190 0.810 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.694 -14.764 8.787 19.727 hybrid contribution 1.673 0.280 -0.349 1.732 sum -8.021 -14.484 8.438 18.582 Atomic orbital electron populations 1.22224 0.92783 1.03114 1.03173 1.19873 0.94286 0.90288 0.82940 1.21099 0.84338 0.95290 0.97609 1.42261 1.00668 1.05013 1.89116 1.19483 0.89684 0.87180 1.41275 0.92100 1.25354 0.96995 0.99708 1.03802 1.69757 1.06552 1.25372 1.59467 0.85366 0.77572 0.79913 0.77855 1.21533 1.21465 1.20370 1.45768 1.53757 1.30417 1.04323 1.18306 0.80354 0.82603 0.83785 1.90489 1.37900 1.29531 1.86121 1.19958 1.02949 0.98581 0.92044 1.21829 0.92556 0.92691 1.01369 1.21372 0.98813 1.01205 0.91220 1.21627 0.95147 0.92879 0.99875 1.18574 0.97600 0.96720 0.92883 1.22321 0.99361 0.96933 0.97719 1.22827 0.94786 0.94156 0.97548 1.67564 1.22036 1.33164 0.99746 1.24289 0.93498 0.92304 0.95511 1.18996 0.99903 0.97281 0.93663 1.22246 0.99916 1.00234 0.97094 1.23187 0.98974 1.02347 0.95529 1.23058 1.03380 0.89874 1.02835 0.92219 0.90447 0.90393 0.96162 0.96397 0.78863 0.93998 0.75576 0.83011 0.80800 0.80651 0.80130 0.80378 0.80971 0.89418 0.86999 0.88279 0.87544 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 7.05 71.98 0.51 -3.82 16 2 C 0.21 6.89 0.54 3.60 0.00 6.89 16 3 C 0.14 6.37 4.95 86.38 0.43 6.79 16 4 N -0.73 -37.91 5.03 -343.43 -1.73 -39.64 16 5 C -0.24 -14.35 9.99 84.03 0.84 -13.52 16 6 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 7 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 8 N -0.96 -58.38 13.06 21.65 0.28 -58.10 16 9 Si 0.96 47.97 29.55 68.60 2.03 50.00 16 10 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 N -0.69 -21.49 4.68 -426.00 -1.99 -23.48 16 14 C 0.56 19.96 7.14 86.71 0.62 20.58 16 15 O -0.56 -23.14 9.70 -4.01 -0.04 -23.17 16 16 C -0.13 -4.10 5.90 -19.89 -0.12 -4.22 16 17 C -0.07 -1.50 9.52 22.56 0.21 -1.28 16 18 C -0.11 -1.83 9.93 22.01 0.22 -1.61 16 19 C -0.08 -1.36 9.79 22.34 0.22 -1.14 16 20 C -0.05 -1.32 5.74 -21.30 -0.12 -1.44 16 21 C -0.14 -3.06 9.88 22.41 0.22 -2.84 16 22 C 0.05 1.29 11.07 84.13 0.93 2.22 16 23 N -0.52 -17.90 10.30 -195.73 -2.02 -19.91 16 24 C 0.11 4.22 10.49 85.23 0.89 5.12 16 25 C -0.10 -3.15 5.76 -21.14 -0.12 -3.28 16 26 C -0.18 -5.05 4.86 -10.79 -0.05 -5.10 16 27 C -0.16 -3.58 9.63 30.62 0.29 -3.29 16 28 C -0.15 -3.06 9.74 30.62 0.30 -2.76 16 29 H 0.06 1.97 6.08 -2.39 -0.01 1.96 16 30 H 0.08 1.96 6.80 -2.39 -0.02 1.95 16 31 H 0.08 1.77 7.00 -2.38 -0.02 1.75 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.02 0.90 6.26 -2.38 -0.01 0.89 16 34 H 0.38 20.04 6.63 -92.71 -0.61 19.43 16 35 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 36 H 0.41 10.50 6.46 -92.71 -0.60 9.90 16 37 H 0.15 2.70 6.40 -2.91 -0.02 2.68 16 38 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.17 7.24 4.97 -2.93 -0.01 7.22 16 43 H 0.09 3.19 7.09 -2.39 -0.02 3.17 16 44 H 0.11 2.20 5.88 -2.39 -0.01 2.19 16 45 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.11 1.83 7.37 -2.39 -0.02 1.82 16 Total: -1.00 -78.45 374.87 2.09 -76.36 By element: Atomic # 1 Polarization: 44.23 SS G_CDS: -0.18 Total: 44.05 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 5.74 Total: -6.10 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -5.46 Total: -141.14 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.04 Total: -23.17 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -78.45 2.09 -76.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732250583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.847 kcal (2) G-P(sol) polarization free energy of solvation -78.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds