Wall clock time and date at job start Tue Mar 31 2020 22:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46976 * 2 1 4 4 N 1.46504 * 109.46880 * 299.99712 * 3 2 1 5 5 C 1.36943 * 119.99797 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99842 * 359.97438 * 5 4 3 7 7 C 1.38807 * 119.99985 * 180.02562 * 5 4 3 8 8 N 1.31626 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00328 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46595 * 59.99662 * 9 7 5 11 11 H 1.48496 * 109.47499 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46963 * 300.00055 * 9 7 5 13 13 N 1.46500 * 109.47059 * 239.99859 * 2 1 3 14 14 C 1.34773 * 119.99833 * 174.06154 * 13 2 1 15 15 O 1.21505 * 120.00345 * 355.56576 * 14 13 2 16 16 C 1.48275 * 120.00289 * 175.56963 * 14 13 2 17 17 C 1.40282 * 119.24209 * 179.97438 * 16 14 13 18 18 C 1.36500 * 119.81281 * 179.77952 * 17 16 14 19 19 C 1.40760 * 118.24447 * 0.45683 * 18 17 16 20 20 C 1.40423 * 121.27240 * 179.82143 * 19 18 17 21 21 C 1.36136 * 119.64765 * 179.74110 * 20 19 18 22 22 C 1.39438 * 120.91350 * 0.02562 * 21 20 19 23 23 C 1.35991 * 121.08247 * 359.97438 * 22 21 20 24 24 C 1.40823 * 119.74389 * 0.02562 * 23 22 21 25 25 N 1.31875 * 119.23880 * 359.97438 * 16 14 13 26 26 C 1.52997 * 109.46945 * 119.99700 * 2 1 3 27 27 C 1.53004 * 117.49877 * 122.16133 * 26 2 1 28 28 C 1.53000 * 117.50028 * 53.50169 * 26 2 1 29 29 H 1.09001 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47198 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47367 * 60.00546 * 1 2 3 32 32 H 1.08995 * 109.47298 * 59.99889 * 3 2 1 33 33 H 1.09000 * 109.47027 * 180.02562 * 3 2 1 34 34 H 0.97001 * 120.00366 * 0.02562 * 4 3 2 35 35 H 0.96996 * 120.00201 * 180.02562 * 8 7 5 36 36 H 0.96997 * 120.00178 * 354.05888 * 13 2 1 37 37 H 1.07997 * 120.09162 * 0.02562 * 17 16 14 38 38 H 1.07999 * 120.87969 * 180.02562 * 18 17 16 39 39 H 1.08000 * 120.17549 * 359.73849 * 20 19 18 40 40 H 1.07999 * 119.54267 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.45345 * 179.97438 * 22 21 20 42 42 H 1.08007 * 120.12993 * 180.02562 * 23 22 21 43 43 H 1.09001 * 115.54923 * 267.82996 * 26 2 1 44 44 H 1.09002 * 117.49544 * 359.97438 * 27 26 2 45 45 H 1.08997 * 117.49883 * 145.02070 * 27 26 2 46 46 H 1.09000 * 117.49907 * 214.97412 * 28 26 2 47 47 H 1.09003 * 117.49890 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1330 -1.1962 5 6 1.8829 3.4440 -1.4132 6 1 2.5037 3.9688 -0.7023 7 6 1.4198 4.0984 -2.5464 8 7 0.6627 3.4588 -3.4126 9 14 1.8709 5.8868 -2.8421 10 1 3.3476 6.0165 -2.9311 11 1 1.2564 6.3489 -4.1125 12 1 1.3681 6.7166 -1.7179 13 7 2.0183 -0.6906 -1.1962 14 6 3.3375 -0.7102 -1.4716 15 8 4.1133 -0.0881 -0.7734 16 6 3.8422 -1.4909 -2.6268 17 6 5.2183 -1.4997 -2.8992 18 6 5.6961 -2.2180 -3.9570 19 6 4.7750 -2.9257 -4.7521 20 6 5.1964 -3.6820 -5.8576 21 6 4.2776 -4.3578 -6.6008 22 6 2.9215 -4.3097 -6.2802 23 6 2.4765 -3.5878 -5.2171 24 6 3.3953 -2.8746 -4.4232 25 7 2.9871 -2.1609 -3.3744 26 6 2.0400 -0.7212 1.2493 27 6 2.9566 -1.9288 1.0432 28 6 1.5144 -2.1335 1.5137 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 0.9937 1.6617 -1.8346 35 1 0.3394 3.9160 -4.2046 36 1 1.3923 -1.1338 -1.7899 37 1 5.8981 -0.9429 -2.2714 38 1 6.7522 -2.2372 -4.1822 39 1 6.2438 -3.7272 -6.1169 40 1 4.6037 -4.9393 -7.4505 41 1 2.2128 -4.8546 -6.8863 42 1 1.4226 -3.5616 -4.9824 43 1 2.2318 -0.0855 2.1137 44 1 3.1959 -2.2097 0.0175 45 1 3.7511 -2.0878 1.7722 46 1 1.3608 -2.4272 2.5521 47 1 0.8049 -2.5488 0.7979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732250946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:46 Heat of formation + Delta-G solvation = 52.432032 kcal Electronic energy + Delta-G solvation = -29684.295354 eV Core-core repulsion = 25832.801206 eV Total energy + Delta-G solvation = -3851.494148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17430 -41.26651 -38.76174 -37.64875 -36.59189 -35.06336 -34.52392 -33.21390 -31.78634 -31.20743 -30.71871 -27.69040 -26.33577 -25.48755 -24.69132 -23.17256 -23.07494 -22.98963 -22.31681 -20.34699 -19.37770 -19.21206 -18.83087 -18.15123 -17.25406 -16.92857 -16.47136 -16.27054 -15.94778 -15.64840 -15.43583 -15.36691 -15.05166 -14.95192 -14.89865 -14.60424 -14.27584 -14.03638 -13.58050 -13.55336 -13.31305 -13.01392 -12.79656 -12.69018 -12.60091 -12.45217 -12.42458 -12.30040 -12.17460 -12.02858 -11.77607 -11.64065 -11.38258 -11.19114 -10.95391 -10.82400 -10.42018 -10.00769 -9.78455 -9.26713 -8.91578 -7.94518 -5.20809 -0.81993 -0.33562 0.94231 1.42310 1.45871 1.46415 1.52156 2.06880 2.31517 2.54621 2.88664 3.02190 3.11492 3.38502 3.57582 3.62982 3.68621 3.83932 3.88518 3.97805 3.99045 4.15942 4.17356 4.24747 4.34094 4.35458 4.38636 4.50498 4.53724 4.76337 4.76553 4.82997 4.90961 4.93173 4.93964 5.03834 5.04768 5.08882 5.19036 5.27134 5.31500 5.33377 5.38424 5.44902 5.46613 5.49537 5.69624 5.87698 6.27602 6.46508 6.73516 7.25618 7.34240 8.10732 8.37219 9.28661 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.004056 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.903170 B = 6901.927049 C = 8706.538761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.203 3.797 3 C 0.139 3.861 4 N -0.731 5.731 5 C -0.242 4.242 6 H 0.066 0.934 7 C -0.073 4.073 8 N -0.967 5.967 9 Si 0.970 3.030 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.689 5.689 14 C 0.573 3.427 15 O -0.546 6.546 16 C 0.096 3.904 17 C -0.148 4.148 18 C -0.050 4.050 19 C -0.104 4.104 20 C -0.102 4.102 21 C -0.104 4.104 22 C -0.092 4.092 23 C -0.110 4.110 24 C 0.095 3.905 25 N -0.459 5.459 26 C -0.159 4.159 27 C -0.174 4.174 28 C -0.149 4.149 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.021 0.979 33 H 0.035 0.965 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.408 0.592 37 H 0.146 0.854 38 H 0.183 0.817 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.138 0.862 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 -22.742 -2.331 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.117 3.883 3 C 0.012 3.988 4 N -0.374 5.374 5 C -0.374 4.374 6 H 0.084 0.916 7 C -0.265 4.265 8 N -0.618 5.618 9 Si 0.799 3.201 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.202 1.202 13 N -0.340 5.340 14 C 0.358 3.642 15 O -0.423 6.423 16 C -0.057 4.057 17 C -0.168 4.168 18 C -0.076 4.076 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.129 4.129 24 C -0.028 4.028 25 N -0.171 5.171 26 C -0.179 4.179 27 C -0.211 4.211 28 C -0.185 4.185 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.244 0.756 37 H 0.164 0.836 38 H 0.201 0.799 39 H 0.181 0.819 40 H 0.184 0.816 41 H 0.180 0.820 42 H 0.156 0.844 43 H 0.129 0.871 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.133 0.867 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.121 -22.152 -1.600 23.038 hybrid contribution 0.502 1.270 -0.783 1.574 sum 6.623 -20.882 -2.383 22.036 Atomic orbital electron populations 1.21917 0.91677 1.03094 1.02965 1.20029 0.94757 0.90174 0.83331 1.21252 0.97964 0.90516 0.89116 1.42347 1.60984 1.09841 1.24237 1.19541 1.24479 0.89030 1.04317 0.91649 1.25468 1.01295 1.02333 0.97410 1.69808 1.40987 1.37564 1.13477 0.85256 0.77458 0.80410 0.76933 1.21089 1.21743 1.20167 1.45798 1.06957 1.54661 1.26560 1.17966 0.83109 0.79966 0.83113 1.90699 1.57101 1.43678 1.50850 1.21435 0.92032 0.96785 0.95473 1.21825 0.94920 1.00373 0.99719 1.21860 1.01707 0.92358 0.91660 1.19319 0.93506 0.99565 0.98253 1.21393 1.02156 0.95550 0.92911 1.21483 0.92552 0.98143 0.99993 1.21364 0.97238 0.97001 0.95591 1.21082 0.99638 0.96832 0.95338 1.19363 0.92903 0.96992 0.93590 1.67749 1.38164 1.06276 1.04889 1.22463 1.05837 0.91269 0.98319 1.22902 0.94449 1.02271 1.01494 1.23056 0.95799 0.96583 1.03088 0.89694 0.90175 0.93567 0.96089 0.94699 0.79266 0.94135 0.75562 0.83640 0.79948 0.81867 0.81632 0.82026 0.84408 0.87133 0.90827 0.88751 0.86693 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 8.18 71.98 0.59 -3.80 16 2 C 0.20 7.22 0.55 3.60 0.00 7.22 16 3 C 0.14 6.38 4.81 86.38 0.42 6.80 16 4 N -0.73 -40.13 5.18 -343.46 -1.78 -41.90 16 5 C -0.24 -14.62 9.99 84.03 0.84 -13.78 16 6 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 7 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 8 N -0.97 -61.65 13.06 21.65 0.28 -61.36 16 9 Si 0.97 48.90 29.55 68.60 2.03 50.93 16 10 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 11 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.69 -25.10 4.16 -425.36 -1.77 -26.87 16 14 C 0.57 22.63 4.85 86.91 0.42 23.05 16 15 O -0.55 -24.24 12.61 -3.73 -0.05 -24.29 16 16 C 0.10 3.40 6.75 42.31 0.29 3.68 16 17 C -0.15 -4.46 9.54 22.36 0.21 -4.25 16 18 C -0.05 -1.14 9.88 22.48 0.22 -0.92 16 19 C -0.10 -2.43 5.75 -21.22 -0.12 -2.55 16 20 C -0.10 -1.54 9.77 22.31 0.22 -1.32 16 21 C -0.10 -1.28 9.96 22.07 0.22 -1.06 16 22 C -0.09 -1.36 9.94 22.04 0.22 -1.14 16 23 C -0.11 -2.45 9.99 22.38 0.22 -2.22 16 24 C 0.10 2.69 6.61 40.47 0.27 2.96 16 25 N -0.46 -15.33 9.47 -177.77 -1.68 -17.01 16 26 C -0.16 -4.76 4.89 -10.79 -0.05 -4.82 16 27 C -0.17 -4.96 8.62 30.62 0.26 -4.70 16 28 C -0.15 -3.40 9.68 30.62 0.30 -3.11 16 29 H 0.08 2.11 6.91 -2.39 -0.02 2.10 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 1.73 6.86 -2.39 -0.02 1.71 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.04 1.80 5.63 -2.39 -0.01 1.79 16 34 H 0.37 21.40 6.35 -92.71 -0.59 20.81 16 35 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.41 14.12 7.79 -92.71 -0.72 13.40 16 37 H 0.15 4.35 7.60 -2.91 -0.02 4.33 16 38 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 41 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.11 3.27 8.06 -2.39 -0.02 3.25 16 44 H 0.07 2.37 5.21 -2.39 -0.01 2.36 16 45 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.10 2.15 7.20 -2.39 -0.02 2.13 16 Total: -1.00 -78.88 381.21 1.72 -77.16 By element: Atomic # 1 Polarization: 47.58 SS G_CDS: -0.30 Total: 47.28 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 4.99 Total: -3.93 kcal Atomic # 7 Polarization: -142.20 SS G_CDS: -4.95 Total: -147.15 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Total: -78.88 1.72 -77.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732250946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.591 kcal (2) G-P(sol) polarization free energy of solvation -78.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds