Wall clock time and date at job start Tue Mar 31 2020 22:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47604 * 2 1 4 4 N 1.46499 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99742 * 179.72770 * 4 3 2 6 6 H 1.07997 * 120.00184 * 0.27606 * 5 4 3 7 7 C 1.38816 * 119.99509 * 180.27623 * 5 4 3 8 8 N 1.31622 * 119.99730 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00190 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47672 * 89.99857 * 9 7 5 11 11 H 1.48504 * 109.47209 * 210.00013 * 9 7 5 12 12 H 1.48501 * 109.47162 * 329.99631 * 9 7 5 13 13 N 1.46500 * 109.46691 * 120.00481 * 2 1 3 14 14 C 1.34774 * 119.99743 * 298.22861 * 13 2 1 15 15 O 1.21502 * 120.00100 * 5.13086 * 14 13 2 16 16 C 1.48283 * 119.99747 * 185.12783 * 14 13 2 17 17 C 1.40278 * 119.23937 * 179.97438 * 16 14 13 18 18 C 1.36511 * 119.82041 * 179.97438 * 17 16 14 19 19 C 1.40760 * 118.24045 * 0.02562 * 18 17 16 20 20 C 1.40413 * 121.28382 * 180.02562 * 19 18 17 21 21 C 1.36142 * 119.65037 * 180.02562 * 20 19 18 22 22 C 1.39430 * 120.91291 * 359.96541 * 21 20 19 23 23 C 1.35994 * 121.08690 * 0.02562 * 22 21 20 24 24 C 1.40823 * 119.73514 * 0.02562 * 23 22 21 25 25 N 1.31879 * 119.24363 * 359.73135 * 16 14 13 26 26 C 1.53003 * 109.46796 * 239.99937 * 2 1 3 27 27 C 1.52997 * 117.50014 * 12.03549 * 26 2 1 28 28 C 1.52998 * 117.50190 * 303.40778 * 26 2 1 29 29 H 1.09005 * 109.46646 * 59.99367 * 1 2 3 30 30 H 1.08993 * 109.47393 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47222 * 300.00398 * 1 2 3 32 32 H 1.09010 * 109.47077 * 59.99781 * 3 2 1 33 33 H 1.09006 * 109.47251 * 300.00400 * 3 2 1 34 34 H 0.96992 * 119.99633 * 0.02562 * 4 3 2 35 35 H 0.97001 * 120.00212 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99872 * 118.23699 * 13 2 1 37 37 H 1.08000 * 120.09566 * 359.95648 * 17 16 14 38 38 H 1.07996 * 120.88034 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.17848 * 359.97438 * 20 19 18 40 40 H 1.07992 * 119.54118 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.45955 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.13332 * 180.02562 * 23 22 21 43 43 H 1.09003 * 115.54712 * 157.74092 * 26 2 1 44 44 H 1.09002 * 117.49735 * 359.97438 * 27 26 2 45 45 H 1.08996 * 117.50406 * 145.02105 * 27 26 2 46 46 H 1.09000 * 117.50193 * 214.98107 * 28 26 2 47 47 H 1.09007 * 117.49736 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1898 2.6282 -0.0049 6 1 3.6499 3.5635 -0.0052 7 6 5.5780 2.6281 -0.0101 8 7 6.2361 3.7679 -0.0159 9 14 6.5118 1.0103 -0.0103 10 1 6.7541 0.5787 -1.4103 11 1 7.8121 1.1892 0.6845 12 1 5.7119 -0.0231 0.6949 13 7 2.0183 -0.6907 1.1961 14 6 1.7223 -0.2099 2.4199 15 8 0.9746 0.7410 2.5345 16 6 2.3092 -0.8413 3.6264 17 6 1.9908 -0.3275 4.8923 18 6 2.5240 -0.9000 6.0110 19 6 3.3866 -2.0005 5.8494 20 6 3.9701 -2.6382 6.9560 21 6 4.8001 -3.6996 6.7613 22 6 5.0794 -4.1643 5.4767 23 6 4.5326 -3.5721 4.3814 24 6 3.6697 -2.4706 4.5405 25 7 3.1147 -1.8759 3.4850 26 6 2.0400 -0.7213 -1.2493 27 6 1.0240 -1.0304 -2.3507 28 6 1.5710 -2.1600 -1.4754 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9900 0.6023 0.0006 35 1 7.2061 3.7679 -0.0192 36 1 2.5546 -1.4941 1.1073 37 1 1.3258 0.5188 4.9817 38 1 2.2908 -0.5181 6.9939 39 1 3.7622 -2.2880 7.9563 40 1 5.2482 -4.1885 7.6136 41 1 5.7408 -5.0085 5.3494 42 1 4.7592 -3.9450 3.3935 43 1 3.0548 -0.4686 -1.5567 44 1 -0.0077 -0.7204 -2.1851 45 1 1.3702 -0.9812 -3.3830 46 1 2.2770 -2.8537 -1.9319 47 1 0.8987 -2.5925 -0.7343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732250947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:50 Heat of formation + Delta-G solvation = 70.882109 kcal Electronic energy + Delta-G solvation = -29634.957004 eV Core-core repulsion = 25784.262911 eV Total energy + Delta-G solvation = -3850.694093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13236 -40.02137 -38.07128 -36.86597 -34.81168 -33.92179 -33.35766 -31.53622 -30.79691 -30.28297 -29.65305 -26.14992 -25.32904 -24.00722 -23.42454 -22.30807 -22.27897 -21.81322 -20.81580 -18.95169 -18.31988 -17.92820 -17.59461 -17.32611 -16.07521 -15.39047 -15.20936 -15.11376 -14.81090 -14.67886 -14.54810 -14.16561 -14.07534 -13.80562 -13.46792 -13.29202 -13.00902 -12.77682 -12.38067 -12.25712 -12.06674 -11.89812 -11.86103 -11.71660 -11.63262 -11.13286 -10.97980 -10.85423 -10.77224 -10.74714 -10.28134 -10.17406 -10.02768 -9.88573 -9.52189 -9.40174 -8.97681 -8.78514 -8.66918 -8.48673 -7.10759 -5.69126 -3.02411 0.05561 0.52726 1.76763 2.38974 3.11853 3.33800 3.39934 3.44201 3.47728 3.87397 4.04143 4.07108 4.34603 4.55450 4.60498 4.65239 4.70732 4.75332 4.91917 4.94209 4.99831 5.09924 5.13382 5.24689 5.28298 5.33377 5.54691 5.61834 5.62523 5.71678 5.73958 5.79845 5.86526 5.90770 5.96334 6.00015 6.10216 6.13443 6.17523 6.19633 6.28210 6.35780 6.49379 6.57888 6.59514 6.82889 7.02199 7.52816 7.86790 8.08981 8.44450 8.50238 9.30075 10.02458 10.23382 11.49805 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.004325 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.605631 B = 6472.987515 C = 7693.319294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.196 3.804 3 C 0.148 3.852 4 N -0.751 5.751 5 C -0.234 4.234 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.878 3.122 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.276 1.276 13 N -0.692 5.692 14 C 0.576 3.424 15 O -0.521 6.521 16 C 0.127 3.873 17 C -0.122 4.122 18 C -0.065 4.065 19 C -0.090 4.090 20 C -0.100 4.100 21 C -0.111 4.111 22 C -0.107 4.107 23 C -0.084 4.084 24 C 0.124 3.876 25 N -0.443 5.443 26 C -0.155 4.155 27 C -0.168 4.168 28 C -0.182 4.182 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.359 0.641 35 H 0.258 0.742 36 H 0.406 0.594 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.272 -19.017 10.357 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.111 3.889 3 C 0.021 3.979 4 N -0.396 5.396 5 C -0.364 4.364 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.585 5.585 9 Si 0.708 3.292 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.202 1.202 13 N -0.343 5.343 14 C 0.360 3.640 15 O -0.397 6.397 16 C -0.027 4.027 17 C -0.142 4.142 18 C -0.091 4.091 19 C -0.092 4.092 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.102 4.102 24 C 0.001 3.999 25 N -0.155 5.155 26 C -0.174 4.174 27 C -0.205 4.205 28 C -0.219 4.219 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.192 0.808 35 H 0.068 0.932 36 H 0.242 0.758 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.529 -18.441 9.585 22.863 hybrid contribution 1.209 -1.114 0.784 1.822 sum -8.319 -19.555 10.369 23.646 Atomic orbital electron populations 1.22291 0.94220 1.01800 1.03807 1.20173 0.93624 0.93194 0.81926 1.21042 0.85153 0.91554 1.00191 1.42623 1.00756 1.05150 1.91106 1.19076 0.89451 0.85908 1.41944 0.89238 1.24620 0.96068 0.96008 1.02532 1.69699 1.06813 1.23728 1.58278 0.86623 0.79874 0.84990 0.77665 1.21172 1.21891 1.20231 1.45817 1.53966 1.29889 1.04580 1.17718 0.80833 0.82910 0.82546 1.90721 1.35927 1.26956 1.86069 1.21513 0.94393 0.92520 0.94262 1.21785 1.00145 1.00790 0.91490 1.21455 0.94346 0.93686 0.99573 1.18979 0.98655 0.97058 0.94494 1.20993 0.97128 0.95985 0.97784 1.20974 0.97862 0.96678 0.97426 1.20911 0.99521 1.00064 0.92202 1.20900 0.95435 0.93857 1.00050 1.18857 0.97081 0.96025 0.87958 1.67835 1.06744 1.07706 1.33209 1.22533 1.00653 0.97330 0.96874 1.23063 0.99186 1.02483 0.95804 1.22961 1.04038 0.91414 1.03508 0.91311 0.92822 0.90042 0.92967 0.94670 0.80784 0.93242 0.75790 0.83003 0.83690 0.85081 0.85451 0.85178 0.84457 0.86550 0.87999 0.88730 0.88885 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 7.06 37.16 0.26 -2.04 16 2 C 0.20 3.22 0.54 -131.82 -0.07 3.15 16 3 C 0.15 3.12 4.94 -4.05 -0.02 3.10 16 4 N -0.75 -18.61 4.83 -59.91 -0.29 -18.90 16 5 C -0.23 -6.91 10.47 -15.06 -0.16 -7.07 16 6 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 7 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 8 N -0.94 -30.40 13.97 55.49 0.78 -29.63 16 9 Si 0.88 23.00 27.74 -169.99 -4.71 18.29 16 10 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 12 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 13 N -0.69 -11.46 4.71 -48.40 -0.23 -11.69 16 14 C 0.58 10.22 7.22 -12.13 -0.09 10.13 16 15 O -0.52 -10.16 12.51 5.36 0.07 -10.09 16 16 C 0.13 2.06 6.75 -82.95 -0.56 1.50 16 17 C -0.12 -1.68 9.54 -39.44 -0.38 -2.05 16 18 C -0.06 -0.73 9.88 -39.25 -0.39 -1.12 16 19 C -0.09 -1.08 5.75 -106.71 -0.61 -1.69 16 20 C -0.10 -0.92 9.77 -39.52 -0.39 -1.30 16 21 C -0.11 -0.91 9.96 -39.89 -0.40 -1.31 16 22 C -0.11 -0.95 9.94 -39.94 -0.40 -1.35 16 23 C -0.08 -0.96 9.99 -39.41 -0.39 -1.35 16 24 C 0.12 1.72 6.61 -84.86 -0.56 1.16 16 25 N -0.44 -6.95 9.48 -7.54 -0.07 -7.02 16 26 C -0.16 -2.30 4.86 -90.62 -0.44 -2.74 16 27 C -0.17 -2.00 9.62 -26.73 -0.26 -2.26 16 28 C -0.18 -2.12 9.71 -26.73 -0.26 -2.38 16 29 H 0.07 0.88 6.81 -51.93 -0.35 0.53 16 30 H 0.05 0.67 7.00 -51.93 -0.36 0.30 16 31 H 0.08 1.29 6.13 -51.93 -0.32 0.97 16 32 H 0.05 1.22 6.22 -51.92 -0.32 0.89 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.36 8.70 4.49 -40.82 -0.18 8.52 16 35 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 36 H 0.41 6.33 7.70 -40.82 -0.31 6.02 16 37 H 0.15 1.96 7.60 -52.49 -0.40 1.57 16 38 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.12 2.00 7.09 -51.93 -0.37 1.64 16 44 H 0.10 1.12 5.87 -51.93 -0.31 0.81 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.09 1.03 7.39 -51.93 -0.38 0.65 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -35.34 379.46 -10.23 -45.57 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -6.29 Total: 15.38 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -5.20 Total: -7.63 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 0.19 Total: -67.24 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.34 -10.23 -45.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732250947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.450 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds