Wall clock time and date at job start Tue Mar 31 2020 22:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47604 * 2 1 4 4 N 1.46499 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99742 * 179.72770 * 4 3 2 6 6 H 1.07997 * 120.00184 * 0.27606 * 5 4 3 7 7 C 1.38816 * 119.99509 * 180.27623 * 5 4 3 8 8 N 1.31622 * 119.99730 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00190 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47672 * 89.99857 * 9 7 5 11 11 H 1.48504 * 109.47209 * 210.00013 * 9 7 5 12 12 H 1.48501 * 109.47162 * 329.99631 * 9 7 5 13 13 N 1.46500 * 109.46691 * 120.00481 * 2 1 3 14 14 C 1.34774 * 119.99743 * 298.22861 * 13 2 1 15 15 O 1.21502 * 120.00100 * 5.13086 * 14 13 2 16 16 C 1.48283 * 119.99747 * 185.12783 * 14 13 2 17 17 C 1.40278 * 119.23937 * 179.97438 * 16 14 13 18 18 C 1.36511 * 119.82041 * 179.97438 * 17 16 14 19 19 C 1.40760 * 118.24045 * 0.02562 * 18 17 16 20 20 C 1.40413 * 121.28382 * 180.02562 * 19 18 17 21 21 C 1.36142 * 119.65037 * 180.02562 * 20 19 18 22 22 C 1.39430 * 120.91291 * 359.96541 * 21 20 19 23 23 C 1.35994 * 121.08690 * 0.02562 * 22 21 20 24 24 C 1.40823 * 119.73514 * 0.02562 * 23 22 21 25 25 N 1.31879 * 119.24363 * 359.73135 * 16 14 13 26 26 C 1.53003 * 109.46796 * 239.99937 * 2 1 3 27 27 C 1.52997 * 117.50014 * 12.03549 * 26 2 1 28 28 C 1.52998 * 117.50190 * 303.40778 * 26 2 1 29 29 H 1.09005 * 109.46646 * 59.99367 * 1 2 3 30 30 H 1.08993 * 109.47393 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47222 * 300.00398 * 1 2 3 32 32 H 1.09010 * 109.47077 * 59.99781 * 3 2 1 33 33 H 1.09006 * 109.47251 * 300.00400 * 3 2 1 34 34 H 0.96992 * 119.99633 * 0.02562 * 4 3 2 35 35 H 0.97001 * 120.00212 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99872 * 118.23699 * 13 2 1 37 37 H 1.08000 * 120.09566 * 359.95648 * 17 16 14 38 38 H 1.07996 * 120.88034 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.17848 * 359.97438 * 20 19 18 40 40 H 1.07992 * 119.54118 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.45955 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.13332 * 180.02562 * 23 22 21 43 43 H 1.09003 * 115.54712 * 157.74092 * 26 2 1 44 44 H 1.09002 * 117.49735 * 359.97438 * 27 26 2 45 45 H 1.08996 * 117.50406 * 145.02105 * 27 26 2 46 46 H 1.09000 * 117.50193 * 214.98107 * 28 26 2 47 47 H 1.09007 * 117.49736 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1898 2.6282 -0.0049 6 1 3.6499 3.5635 -0.0052 7 6 5.5780 2.6281 -0.0101 8 7 6.2361 3.7679 -0.0159 9 14 6.5118 1.0103 -0.0103 10 1 6.7541 0.5787 -1.4103 11 1 7.8121 1.1892 0.6845 12 1 5.7119 -0.0231 0.6949 13 7 2.0183 -0.6907 1.1961 14 6 1.7223 -0.2099 2.4199 15 8 0.9746 0.7410 2.5345 16 6 2.3092 -0.8413 3.6264 17 6 1.9908 -0.3275 4.8923 18 6 2.5240 -0.9000 6.0110 19 6 3.3866 -2.0005 5.8494 20 6 3.9701 -2.6382 6.9560 21 6 4.8001 -3.6996 6.7613 22 6 5.0794 -4.1643 5.4767 23 6 4.5326 -3.5721 4.3814 24 6 3.6697 -2.4706 4.5405 25 7 3.1147 -1.8759 3.4850 26 6 2.0400 -0.7213 -1.2493 27 6 1.0240 -1.0304 -2.3507 28 6 1.5710 -2.1600 -1.4754 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9900 0.6023 0.0006 35 1 7.2061 3.7679 -0.0192 36 1 2.5546 -1.4941 1.1073 37 1 1.3258 0.5188 4.9817 38 1 2.2908 -0.5181 6.9939 39 1 3.7622 -2.2880 7.9563 40 1 5.2482 -4.1885 7.6136 41 1 5.7408 -5.0085 5.3494 42 1 4.7592 -3.9450 3.3935 43 1 3.0548 -0.4686 -1.5567 44 1 -0.0077 -0.7204 -2.1851 45 1 1.3702 -0.9812 -3.3830 46 1 2.2770 -2.8537 -1.9319 47 1 0.8987 -2.5925 -0.7343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732250947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:49 Heat of formation + Delta-G solvation = 47.469538 kcal Electronic energy + Delta-G solvation = -29635.972249 eV Core-core repulsion = 25784.262911 eV Total energy + Delta-G solvation = -3851.709338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.13670 -41.21870 -39.21539 -37.80594 -36.55036 -35.22812 -34.54340 -33.41111 -32.10875 -31.24927 -30.76467 -27.83428 -26.44859 -25.12438 -24.53482 -23.89498 -23.17268 -23.10226 -21.93279 -20.41491 -19.73737 -19.32861 -18.88471 -18.18328 -17.14430 -16.86977 -16.58377 -16.34642 -16.28607 -15.75524 -15.54657 -15.42461 -15.22746 -15.07615 -14.77899 -14.54677 -14.28460 -14.05983 -13.93784 -13.88741 -13.42761 -13.25171 -12.92123 -12.71515 -12.63563 -12.47976 -12.38544 -12.33246 -12.12903 -12.04276 -11.88502 -11.66343 -11.35479 -11.17123 -11.07332 -10.96814 -10.54113 -10.10720 -9.81874 -9.30869 -9.28862 -8.07674 -5.39252 -0.85763 -0.36133 0.90924 1.27163 1.31334 1.38221 1.39326 1.93506 2.26244 2.40977 2.85584 3.04621 3.08140 3.23243 3.49497 3.55140 3.64218 3.69557 3.80556 3.81957 3.89593 4.10125 4.14029 4.15184 4.22498 4.32871 4.36312 4.48388 4.55869 4.73958 4.75476 4.81819 4.84387 4.89953 4.93839 5.00612 5.01144 5.05932 5.06617 5.22117 5.30123 5.35444 5.39713 5.42537 5.47056 5.55835 5.70502 5.84988 6.15946 6.39999 6.68313 7.02503 7.14198 7.78275 8.00250 9.14495 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.004325 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.605631 B = 6472.987515 C = 7693.319294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.204 3.796 3 C 0.148 3.852 4 N -0.746 5.746 5 C -0.230 4.230 6 H 0.052 0.948 7 C -0.060 4.060 8 N -0.982 5.982 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.294 1.294 12 H -0.262 1.262 13 N -0.689 5.689 14 C 0.568 3.432 15 O -0.551 6.551 16 C 0.095 3.905 17 C -0.146 4.146 18 C -0.050 4.050 19 C -0.104 4.104 20 C -0.101 4.101 21 C -0.104 4.104 22 C -0.092 4.092 23 C -0.112 4.112 24 C 0.095 3.905 25 N -0.460 5.460 26 C -0.185 4.185 27 C -0.155 4.155 28 C -0.158 4.158 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.033 0.967 34 H 0.364 0.636 35 H 0.258 0.742 36 H 0.411 0.589 37 H 0.149 0.851 38 H 0.184 0.816 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.138 0.862 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 -23.156 11.896 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.119 3.881 3 C 0.021 3.979 4 N -0.392 5.392 5 C -0.362 4.362 6 H 0.070 0.930 7 C -0.252 4.252 8 N -0.633 5.633 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.221 1.221 12 H -0.188 1.188 13 N -0.339 5.339 14 C 0.353 3.647 15 O -0.429 6.429 16 C -0.058 4.058 17 C -0.167 4.167 18 C -0.075 4.075 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.130 4.130 24 C -0.029 4.029 25 N -0.173 5.173 26 C -0.204 4.204 27 C -0.192 4.192 28 C -0.195 4.195 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.198 0.802 35 H 0.067 0.933 36 H 0.247 0.753 37 H 0.166 0.834 38 H 0.201 0.799 39 H 0.182 0.818 40 H 0.183 0.817 41 H 0.179 0.821 42 H 0.156 0.844 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.114 -22.616 11.106 26.794 hybrid contribution 1.105 0.142 0.434 1.196 sum -8.009 -22.474 11.540 26.503 Atomic orbital electron populations 1.22217 0.92252 1.03218 1.03512 1.20033 0.94920 0.90247 0.82942 1.21104 0.82983 0.95267 0.98591 1.42525 1.02235 1.03692 1.90743 1.19033 0.89840 0.86324 1.40954 0.93027 1.25414 0.96973 0.99957 1.02814 1.69881 1.07088 1.26406 1.59957 0.85466 0.77917 0.80415 0.78407 1.19517 1.22099 1.18755 1.45845 1.53810 1.29836 1.04402 1.18145 0.80460 0.82622 0.83445 1.90688 1.37300 1.28245 1.86646 1.21378 0.96197 0.93931 0.94268 1.21841 1.01505 1.01606 0.91726 1.21881 0.92657 0.92678 1.00293 1.19321 0.98982 0.97428 0.94839 1.21401 0.96505 0.95831 0.98222 1.21485 0.96578 0.95838 0.98278 1.21365 0.98188 0.99851 0.91775 1.21084 0.96429 0.94172 1.01329 1.19351 0.97971 0.97037 0.88548 1.67732 1.07089 1.07817 1.34612 1.22312 1.00310 1.00416 0.97362 1.23204 0.98921 1.01571 0.95517 1.23044 1.03533 0.89922 1.02958 0.89839 0.90419 0.92118 0.95707 0.94861 0.80184 0.93319 0.75261 0.83355 0.79873 0.81830 0.81663 0.82058 0.84391 0.89135 0.86728 0.87764 0.87466 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 7.06 71.98 0.51 -3.79 16 2 C 0.20 6.79 0.54 3.60 0.00 6.79 16 3 C 0.15 6.52 4.94 86.38 0.43 6.95 16 4 N -0.75 -38.33 4.83 -343.44 -1.66 -39.99 16 5 C -0.23 -14.26 10.47 84.03 0.88 -13.38 16 6 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 7 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 8 N -0.98 -65.96 13.97 21.65 0.30 -65.66 16 9 Si 0.95 48.52 27.74 68.60 1.90 50.42 16 10 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 12 H -0.26 -12.63 6.52 99.48 0.65 -11.98 16 13 N -0.69 -23.41 4.71 -425.35 -2.00 -25.42 16 14 C 0.57 21.27 7.22 86.92 0.63 21.89 16 15 O -0.55 -23.01 12.51 -3.72 -0.05 -23.05 16 16 C 0.09 3.22 6.75 42.31 0.29 3.50 16 17 C -0.15 -4.18 9.54 22.36 0.21 -3.97 16 18 C -0.05 -1.07 9.88 22.48 0.22 -0.84 16 19 C -0.10 -2.31 5.75 -21.22 -0.12 -2.44 16 20 C -0.10 -1.46 9.77 22.31 0.22 -1.24 16 21 C -0.10 -1.22 9.96 22.07 0.22 -1.00 16 22 C -0.09 -1.30 9.94 22.04 0.22 -1.08 16 23 C -0.11 -2.38 9.99 22.38 0.22 -2.15 16 24 C 0.09 2.57 6.61 40.47 0.27 2.84 16 25 N -0.46 -14.77 9.48 -177.76 -1.68 -16.45 16 26 C -0.19 -5.32 4.86 -10.79 -0.05 -5.37 16 27 C -0.15 -3.32 9.62 30.60 0.29 -3.03 16 28 C -0.16 -3.26 9.71 30.60 0.30 -2.96 16 29 H 0.08 2.05 6.81 -2.38 -0.02 2.04 16 30 H 0.08 1.79 7.00 -2.39 -0.02 1.78 16 31 H 0.06 1.98 6.13 -2.39 -0.01 1.97 16 32 H 0.02 1.24 6.22 -2.38 -0.01 1.23 16 33 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.36 17.92 4.49 -92.71 -0.42 17.50 16 35 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 36 H 0.41 12.98 7.70 -92.71 -0.71 12.27 16 37 H 0.15 4.15 7.60 -2.91 -0.02 4.12 16 38 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.09 3.10 7.09 -2.39 -0.02 3.08 16 44 H 0.11 2.17 5.87 -2.39 -0.01 2.16 16 45 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.10 1.97 7.39 -2.38 -0.02 1.95 16 Total: -1.00 -82.45 379.46 1.84 -80.61 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: -0.17 Total: 42.11 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.20 Total: -2.57 kcal Atomic # 7 Polarization: -142.47 SS G_CDS: -5.05 Total: -147.52 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.90 Total: 50.42 kcal Total: -82.45 1.84 -80.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732250947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.084 kcal (2) G-P(sol) polarization free energy of solvation -82.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds