Wall clock time and date at job start Tue Mar 31 2020 22:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47143 * 2 1 4 4 N 1.46502 * 109.46923 * 299.99679 * 3 2 1 5 5 C 1.36933 * 120.00173 * 179.97438 * 4 3 2 6 6 H 1.08010 * 119.99818 * 0.02562 * 5 4 3 7 7 C 1.38814 * 120.00185 * 179.97438 * 5 4 3 8 8 N 1.31610 * 119.99814 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99806 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47272 * 90.00207 * 9 7 5 11 11 H 1.48499 * 109.46984 * 210.00143 * 9 7 5 12 12 H 1.48498 * 109.47541 * 329.99892 * 9 7 5 13 13 N 1.46498 * 109.47299 * 239.99849 * 2 1 3 14 14 C 1.34771 * 119.99865 * 175.44506 * 13 2 1 15 15 O 1.21556 * 120.00404 * 355.82674 * 14 13 2 16 16 C 1.47893 * 120.00152 * 175.82680 * 14 13 2 17 17 C 1.40604 * 119.72516 * 359.97438 * 16 14 13 18 18 C 1.35851 * 120.94843 * 179.97438 * 17 16 14 19 19 C 1.40481 * 119.88172 * 0.04373 * 18 17 16 20 20 C 1.40492 * 121.84092 * 179.97438 * 19 18 17 21 21 N 1.31210 * 119.94187 * 180.02562 * 20 19 18 22 22 C 1.32559 * 122.80290 * 359.70685 * 21 20 19 23 23 C 1.36219 * 121.84593 * 0.59671 * 22 21 20 24 24 C 1.40760 * 118.67621 * 359.42385 * 23 22 21 25 25 C 1.38527 * 119.73216 * 180.02562 * 16 14 13 26 26 C 1.53003 * 109.46969 * 119.99500 * 2 1 3 27 27 C 1.53003 * 117.49944 * 121.78667 * 26 2 1 28 28 C 1.52999 * 117.49920 * 53.12788 * 26 2 1 29 29 H 1.09004 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47283 * 300.00227 * 1 2 3 31 31 H 1.08998 * 109.46896 * 60.00244 * 1 2 3 32 32 H 1.09001 * 109.47618 * 59.99766 * 3 2 1 33 33 H 1.09003 * 109.47332 * 179.97438 * 3 2 1 34 34 H 0.96996 * 119.99935 * 0.02562 * 4 3 2 35 35 H 0.97006 * 119.99905 * 179.97438 * 8 7 5 36 36 H 0.96994 * 119.99925 * 355.43844 * 13 2 1 37 37 H 1.07999 * 119.52405 * 359.97438 * 17 16 14 38 38 H 1.07997 * 120.05616 * 180.02562 * 18 17 16 39 39 H 1.07997 * 120.02736 * 0.02562 * 20 19 18 40 40 H 1.08005 * 119.07805 * 180.31486 * 22 21 20 41 41 H 1.08000 * 120.66116 * 179.69670 * 23 22 21 42 42 H 1.07995 * 120.36586 * 359.97073 * 25 16 14 43 43 H 1.09000 * 115.55022 * 267.45334 * 26 2 1 44 44 H 1.08997 * 117.49495 * 0.02562 * 27 26 2 45 45 H 1.08994 * 117.50269 * 145.02018 * 27 26 2 46 46 H 1.09001 * 117.49828 * 214.98267 * 28 26 2 47 47 H 1.09001 * 117.49835 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8820 3.4442 -1.4127 6 1 2.5030 3.9691 -0.7018 7 6 1.4198 4.0983 -2.5465 8 7 0.6636 3.4585 -3.4130 9 14 1.8711 5.8867 -2.8421 10 1 3.1342 5.9565 -3.6199 11 1 0.7836 6.5523 -3.6034 12 1 2.0542 6.5732 -1.5381 13 7 2.0183 -0.6906 -1.1961 14 6 3.3399 -0.7341 -1.4567 15 8 4.1205 -0.1366 -0.7416 16 6 3.8406 -1.5087 -2.6128 17 6 2.9328 -2.1981 -3.4359 18 6 3.3654 -2.9168 -4.5045 19 6 4.7379 -2.9778 -4.7976 20 6 5.2304 -3.7088 -5.8916 21 7 6.5201 -3.7407 -6.1307 22 6 7.4056 -3.1001 -5.3806 23 6 7.0319 -2.3686 -4.2939 24 6 5.6638 -2.2865 -3.9731 25 6 5.2002 -1.5500 -2.8752 26 6 2.0399 -0.7212 1.2493 27 6 2.9494 -1.9341 1.0431 28 6 1.5077 -2.1301 1.5185 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 0.9938 1.6617 -1.8345 35 1 0.3403 3.9157 -4.2051 36 1 1.3906 -1.1167 -1.8004 37 1 1.8764 -2.1557 -3.2154 38 1 2.6553 -3.4405 -5.1274 39 1 4.5480 -4.2440 -6.5352 40 1 8.4532 -3.1636 -5.6355 41 1 7.7701 -1.8582 -3.6932 42 1 5.8949 -1.0197 -2.2409 43 1 2.2378 -0.0846 2.1117 44 1 3.1848 -2.2180 0.0174 45 1 3.7453 -2.0958 1.7700 46 1 1.3556 -2.4206 2.5580 47 1 0.7938 -2.5431 0.8058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732252264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:08 Heat of formation + Delta-G solvation = 50.311496 kcal Electronic energy + Delta-G solvation = -29556.085043 eV Core-core repulsion = 25704.498942 eV Total energy + Delta-G solvation = -3851.586101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.09147 -41.35846 -38.88254 -37.70276 -36.59442 -35.01388 -34.01767 -33.45018 -32.18159 -30.97431 -30.62424 -27.67206 -26.15931 -25.43113 -24.78475 -23.40220 -23.13760 -22.91216 -22.18962 -20.43881 -19.39129 -19.28273 -18.61972 -17.64483 -17.20547 -17.14652 -16.89189 -16.26912 -15.91888 -15.71916 -15.41087 -15.26172 -15.07488 -15.02492 -14.68818 -14.58622 -14.58133 -13.79828 -13.62075 -13.52951 -13.40625 -13.28080 -13.01352 -12.99230 -12.81993 -12.41335 -12.29016 -12.12964 -12.10286 -11.99536 -11.77980 -11.26619 -11.25807 -11.14455 -10.95400 -10.60587 -10.44535 -10.19570 -9.91642 -9.11349 -8.91317 -7.95594 -5.20527 -0.80789 -0.32938 0.82395 1.42903 1.44536 1.52670 1.55288 2.12920 2.42049 2.54109 2.94644 3.07079 3.37621 3.48122 3.52979 3.58445 3.64401 3.76193 3.83875 3.98416 3.99794 4.01811 4.09877 4.17728 4.27657 4.36684 4.37482 4.55851 4.60162 4.67672 4.74103 4.79544 4.85541 4.91942 4.94030 4.97130 5.03217 5.07407 5.19397 5.22484 5.26857 5.29928 5.33898 5.38030 5.47093 5.60903 5.69564 5.73801 6.27797 6.62742 6.94896 7.31911 7.35304 8.10515 8.38905 9.27477 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.003927 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.443188 B = 7128.728773 C = 9173.483203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.208 3.792 3 C 0.139 3.861 4 N -0.728 5.728 5 C -0.242 4.242 6 H 0.061 0.939 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.965 3.035 10 H -0.293 1.293 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.559 3.441 15 O -0.558 6.558 16 C -0.120 4.120 17 C -0.103 4.103 18 C -0.075 4.075 19 C -0.112 4.112 20 C 0.148 3.852 21 N -0.506 5.506 22 C 0.068 3.932 23 C -0.156 4.156 24 C -0.049 4.049 25 C -0.064 4.064 26 C -0.163 4.163 27 C -0.174 4.174 28 C -0.146 4.146 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.016 0.984 33 H 0.029 0.971 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.407 0.593 37 H 0.152 0.848 38 H 0.180 0.820 39 H 0.200 0.800 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -20.825 0.704 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.122 3.878 3 C 0.012 3.988 4 N -0.372 5.372 5 C -0.374 4.374 6 H 0.079 0.921 7 C -0.260 4.260 8 N -0.613 5.613 9 Si 0.795 3.205 10 H -0.221 1.221 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.348 3.652 15 O -0.437 6.437 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.094 4.094 19 C -0.114 4.114 20 C -0.023 4.023 21 N -0.215 5.215 22 C -0.074 4.074 23 C -0.175 4.175 24 C -0.054 4.054 25 C -0.084 4.084 26 C -0.182 4.182 27 C -0.211 4.211 28 C -0.183 4.183 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.211 0.789 35 H 0.060 0.940 36 H 0.244 0.756 37 H 0.170 0.830 38 H 0.197 0.803 39 H 0.217 0.783 40 H 0.195 0.805 41 H 0.171 0.829 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.128 0.872 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.685 -20.671 0.621 21.204 hybrid contribution -0.166 1.905 0.183 1.921 sum 4.519 -18.766 0.804 19.319 Atomic orbital electron populations 1.21937 0.91401 1.03416 1.03019 1.19904 0.94763 0.89723 0.83377 1.21215 0.97624 0.90970 0.89024 1.42287 1.60983 1.09688 1.24212 1.19523 1.24475 0.89181 1.04216 0.92093 1.25369 1.01285 1.01953 0.97435 1.69764 1.40823 1.37328 1.13406 0.85265 0.76807 0.80814 0.77662 1.22065 1.21515 1.19873 1.45817 1.06660 1.56232 1.26479 1.18326 0.82887 0.79959 0.84065 1.90720 1.56940 1.45147 1.50923 1.20204 0.94842 1.00250 0.97124 1.21222 1.00170 0.95972 0.94760 1.21293 0.93967 0.97609 0.96575 1.19447 0.95186 0.99374 0.97421 1.23805 0.92105 0.93386 0.93048 1.67461 1.03926 1.19957 1.30113 1.22578 1.00485 0.93190 0.91184 1.22204 0.94914 1.00800 0.99615 1.18343 0.94839 0.97084 0.95102 1.21402 0.95068 0.96172 0.95721 1.22436 1.06107 0.91316 0.98358 1.22915 0.94347 1.02100 1.01734 1.23080 0.95793 0.96354 1.03093 0.89107 0.90714 0.93146 0.96621 0.95326 0.78929 0.94036 0.75553 0.83045 0.80271 0.78319 0.80550 0.82906 0.85132 0.88021 0.89980 0.89586 0.87223 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.18 71.98 0.59 -3.24 16 2 C 0.21 6.63 0.55 3.60 0.00 6.64 16 3 C 0.14 6.09 4.83 86.38 0.42 6.51 16 4 N -0.73 -37.84 5.18 -343.44 -1.78 -39.62 16 5 C -0.24 -14.18 9.99 84.03 0.84 -13.34 16 6 H 0.06 3.58 7.83 -2.91 -0.02 3.55 16 7 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 8 N -0.96 -58.56 13.06 21.65 0.28 -58.27 16 9 Si 0.96 47.76 29.55 68.60 2.03 49.78 16 10 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.70 -21.02 4.15 -425.71 -1.77 -22.79 16 14 C 0.56 19.30 4.78 86.80 0.41 19.72 16 15 O -0.56 -23.50 12.58 -3.89 -0.05 -23.55 16 16 C -0.12 -3.51 5.87 -20.07 -0.12 -3.63 16 17 C -0.10 -2.24 9.44 22.29 0.21 -2.03 16 18 C -0.08 -1.32 9.77 22.26 0.22 -1.11 16 19 C -0.11 -2.38 5.75 -21.26 -0.12 -2.50 16 20 C 0.15 2.67 11.04 85.34 0.94 3.62 16 21 N -0.51 -10.81 10.29 -195.50 -2.01 -12.82 16 22 C 0.07 1.34 11.07 84.11 0.93 2.27 16 23 C -0.16 -3.35 9.88 22.42 0.22 -3.13 16 24 C -0.05 -1.22 5.74 -21.29 -0.12 -1.35 16 25 C -0.06 -1.88 9.38 22.79 0.21 -1.67 16 26 C -0.16 -4.48 4.86 -10.79 -0.05 -4.53 16 27 C -0.17 -4.51 8.53 30.62 0.26 -4.25 16 28 C -0.15 -2.91 9.68 30.62 0.30 -2.61 16 29 H 0.09 1.78 6.89 -2.38 -0.02 1.76 16 30 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.05 1.64 6.86 -2.39 -0.02 1.62 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.03 1.44 5.72 -2.39 -0.01 1.43 16 34 H 0.38 19.91 6.35 -92.71 -0.59 19.32 16 35 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 36 H 0.41 9.89 6.47 -92.71 -0.60 9.29 16 37 H 0.15 2.51 6.35 -2.91 -0.02 2.50 16 38 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 40 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.13 4.03 7.62 -2.91 -0.02 4.01 16 43 H 0.10 2.92 8.06 -2.39 -0.02 2.91 16 44 H 0.08 2.30 5.16 -2.39 -0.01 2.28 16 45 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.11 1.81 7.17 -2.39 -0.02 1.79 16 Total: -1.00 -77.25 378.55 2.14 -75.10 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.17 Total: 40.31 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 5.61 Total: -8.15 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -5.27 Total: -133.50 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -77.25 2.14 -75.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732252264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.416 kcal (2) G-P(sol) polarization free energy of solvation -77.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds