Wall clock time and date at job start Tue Mar 31 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46694 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47660 * 55.00367 * 11 10 9 13 13 C 1.53003 * 109.47484 * 295.00127 * 11 10 9 14 14 C 1.53000 * 109.47069 * 175.00135 * 11 10 9 15 15 N 1.46905 * 109.47236 * 184.99793 * 14 11 10 16 16 C 1.46906 * 110.99693 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.46687 * 180.02562 * 16 15 14 18 18 O 1.21296 * 120.00297 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99731 * 180.02562 * 17 16 15 20 20 C 1.37091 * 119.99566 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.01027 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99803 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99772 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00046 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47267 * 60.00556 * 24 22 20 26 26 H 1.48506 * 109.46893 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47503 * 299.99943 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 33 33 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 34 34 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47261 * 299.99742 * 10 9 7 36 36 H 1.08998 * 109.47220 * 60.00528 * 10 9 7 37 37 H 1.09006 * 109.46550 * 300.00401 * 13 11 10 38 38 H 1.08991 * 109.47055 * 59.99952 * 13 11 10 39 39 H 1.09001 * 109.47284 * 180.02562 * 13 11 10 40 40 H 1.08997 * 109.47076 * 304.99827 * 14 11 10 41 41 H 1.09000 * 109.47131 * 64.99896 * 14 11 10 42 42 H 1.00899 * 110.99955 * 56.04952 * 15 14 11 43 43 H 1.08998 * 109.47324 * 300.00670 * 16 15 14 44 44 H 1.09001 * 109.46948 * 60.00431 * 16 15 14 45 45 H 0.96993 * 119.99980 * 0.02562 * 19 17 16 46 46 H 0.97002 * 120.00012 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 6 8.0112 -3.6028 3.0522 12 1 8.7818 -3.1058 2.4629 13 6 7.7079 -4.9732 2.4432 14 6 8.5043 -3.7814 4.4895 15 7 9.7878 -4.4960 4.4817 16 6 10.2932 -4.6854 5.8480 17 6 11.6083 -5.4196 5.7998 18 8 12.0786 -5.7519 4.7322 19 7 12.2620 -5.7069 6.9429 20 6 13.4587 -6.3743 6.8989 21 1 13.8775 -6.6703 5.9485 22 6 14.1329 -6.6702 8.0774 23 7 13.6231 -6.3105 9.2341 24 14 15.7631 -7.5802 8.0177 25 1 16.7437 -6.7882 7.2326 26 1 16.2737 -7.7722 9.3989 27 1 15.5676 -8.9042 7.3742 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6248 -2.4057 -0.5124 33 1 5.6151 -0.9265 -0.5120 34 1 6.8586 -2.8320 0.9328 35 1 6.9334 -1.8097 3.5645 36 1 5.9424 -3.2882 3.5651 37 1 6.9373 -5.4702 3.0326 38 1 7.3566 -4.8461 1.4193 39 1 8.6135 -5.5798 2.4443 40 1 8.6357 -2.8035 4.9526 41 1 7.7718 -4.3563 5.0562 42 1 10.4656 -4.0155 3.9091 43 1 10.4370 -3.7136 6.3202 44 1 9.5732 -5.2664 6.4244 45 1 11.8857 -5.4415 7.7966 46 1 14.0935 -6.5173 10.0568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732341029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:33 Heat of formation + Delta-G solvation = -42.333775 kcal Electronic energy + Delta-G solvation = -27521.167796 eV Core-core repulsion = 23254.715031 eV Total energy + Delta-G solvation = -4266.452765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.62306 -40.23652 -38.40980 -37.32623 -36.55491 -35.03365 -34.10426 -33.88670 -32.57366 -31.35019 -31.17027 -28.02717 -27.43531 -26.56956 -24.86342 -23.57410 -23.07418 -22.75741 -21.12921 -20.57147 -19.22528 -18.26121 -17.88472 -17.65800 -17.11121 -16.66562 -16.25277 -16.01817 -15.64958 -15.16438 -15.02743 -14.74953 -14.60927 -14.42421 -14.13548 -13.74006 -13.69808 -13.49225 -13.46750 -13.30603 -12.90433 -12.76288 -12.61910 -12.42103 -12.23198 -11.97455 -11.71007 -11.53417 -11.36794 -11.19784 -11.14835 -11.00391 -10.94934 -10.55011 -10.45315 -10.22539 -9.87218 -9.52022 -9.51278 -8.48698 -8.08779 -7.97336 -6.42836 -3.83838 0.68771 1.72291 1.96078 2.08118 2.70245 3.19130 3.25066 3.29181 3.29938 3.87005 3.89340 4.04742 4.13607 4.25954 4.26551 4.48584 4.63377 4.71810 4.72582 4.75698 4.87818 4.90166 5.05762 5.10382 5.14136 5.24310 5.26211 5.33014 5.40159 5.50196 5.62002 5.70296 5.80777 5.83500 5.90575 5.96225 6.11710 6.24903 6.33432 6.95116 7.15908 7.53722 7.61301 7.66998 7.89697 8.04656 8.59853 9.16409 9.52950 10.04240 10.74775 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.048000 B = 0.001305 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.190054 B =21458.336397 C =21653.022137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.166 3.834 3 N -0.288 5.288 4 N -0.272 5.272 5 C 0.182 3.818 6 C -0.047 4.047 7 C 0.517 3.483 8 O -0.529 6.529 9 N -0.720 5.720 10 C 0.124 3.876 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.141 4.141 14 C 0.065 3.935 15 N -0.665 5.665 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 O -0.221 6.221 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.405 0.595 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.349 0.651 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.046 9.460 -18.245 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 N -0.136 5.136 4 N -0.118 5.118 5 C -0.030 4.030 6 C -0.088 4.088 7 C 0.301 3.699 8 O -0.405 6.405 9 N -0.372 5.372 10 C 0.000 4.000 11 C -0.119 4.119 12 H 0.097 0.903 13 C -0.198 4.198 14 C -0.065 4.065 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.199 5.199 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 O -0.100 6.100 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.240 0.760 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.168 0.832 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.226 0.774 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.039 10.131 -18.098 31.750 hybrid contribution 0.803 -0.771 0.588 1.259 sum -23.236 9.359 -17.510 30.563 Atomic orbital electron populations 1.20384 0.80039 1.05954 1.05268 1.28027 0.97860 0.79492 0.99087 1.74406 0.95942 1.25573 1.17668 1.74366 1.12408 1.08889 1.16186 1.26803 0.84710 0.91297 1.00206 1.20095 0.90320 1.00823 0.97533 1.20011 0.81112 0.78694 0.90099 1.90799 1.53214 1.50525 1.45955 1.45868 1.27712 1.53753 1.09881 1.21467 0.96835 0.99858 0.81809 1.21350 0.95891 0.96888 0.97771 0.90329 1.21770 1.03065 0.96036 0.98936 1.21896 0.92975 0.96575 0.95054 1.60054 1.04756 1.53658 1.11312 1.21668 0.96804 0.99262 0.90470 1.19803 0.86860 0.85690 0.85078 1.90516 1.69148 1.57774 1.29432 1.41856 1.20290 1.50779 1.07021 1.19657 0.96607 1.32081 0.94725 0.87969 1.25263 0.99932 0.98036 0.94632 1.69606 1.39931 1.47063 0.97680 0.85917 0.81351 0.79843 0.77099 1.19912 1.20968 1.19879 1.84747 1.17351 1.38367 1.69543 0.88199 0.88743 0.87384 0.85200 0.83905 0.76009 0.91156 0.90954 0.92762 0.93685 0.90304 0.95215 0.90714 0.83225 0.93854 0.89589 0.77449 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.18 16 2 C 0.17 1.48 8.48 -12.94 -0.11 1.37 16 3 N -0.29 -3.47 12.22 32.55 0.40 -3.07 16 4 N -0.27 -3.39 12.22 32.55 0.40 -3.00 16 5 C 0.18 1.78 6.97 -12.94 -0.09 1.69 16 6 C -0.05 -0.25 6.33 -29.04 -0.18 -0.44 16 7 C 0.52 4.48 7.82 -10.99 -0.09 4.39 16 8 O -0.53 -7.29 16.03 5.55 0.09 -7.20 16 9 N -0.72 -4.70 5.28 -60.30 -0.32 -5.02 16 10 C 0.12 1.02 5.07 -4.04 -0.02 1.00 16 11 C -0.10 -0.85 2.57 -90.62 -0.23 -1.08 16 12 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 13 C -0.14 -1.23 8.95 37.16 0.33 -0.90 16 14 C 0.07 0.71 5.07 -3.82 -0.02 0.69 16 15 N -0.67 -9.87 5.58 -115.05 -0.64 -10.51 16 16 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 17 C 0.44 10.20 7.82 -10.98 -0.09 10.11 16 18 O -0.58 -15.53 15.78 5.54 0.09 -15.44 16 19 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 24 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 O -0.22 -2.13 10.87 5.37 0.06 -2.07 16 29 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.40 1.45 7.65 -40.82 -0.31 1.14 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.29 7.18 -51.93 -0.37 -0.08 16 39 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.35 5.33 8.43 -39.29 -0.33 5.00 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -37.98 398.37 -5.42 -43.40 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.75 Total: 9.01 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -0.39 Total: 9.88 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.50 Total: -59.46 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.23 Total: -24.71 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.98 -5.42 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732341029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.069 kcal (2) G-P(sol) polarization free energy of solvation -37.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds