Wall clock time and date at job start Tue Mar 31 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46694 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47660 * 55.00367 * 11 10 9 13 13 C 1.53003 * 109.47484 * 295.00127 * 11 10 9 14 14 C 1.53000 * 109.47069 * 175.00135 * 11 10 9 15 15 N 1.46905 * 109.47236 * 184.99793 * 14 11 10 16 16 C 1.46906 * 110.99693 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.46687 * 180.02562 * 16 15 14 18 18 O 1.21296 * 120.00297 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99731 * 180.02562 * 17 16 15 20 20 C 1.37091 * 119.99566 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.01027 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99803 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99772 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00046 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47267 * 60.00556 * 24 22 20 26 26 H 1.48506 * 109.46893 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47503 * 299.99943 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 33 33 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 34 34 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47261 * 299.99742 * 10 9 7 36 36 H 1.08998 * 109.47220 * 60.00528 * 10 9 7 37 37 H 1.09006 * 109.46550 * 300.00401 * 13 11 10 38 38 H 1.08991 * 109.47055 * 59.99952 * 13 11 10 39 39 H 1.09001 * 109.47284 * 180.02562 * 13 11 10 40 40 H 1.08997 * 109.47076 * 304.99827 * 14 11 10 41 41 H 1.09000 * 109.47131 * 64.99896 * 14 11 10 42 42 H 1.00899 * 110.99955 * 56.04952 * 15 14 11 43 43 H 1.08998 * 109.47324 * 300.00670 * 16 15 14 44 44 H 1.09001 * 109.46948 * 60.00431 * 16 15 14 45 45 H 0.96993 * 119.99980 * 0.02562 * 19 17 16 46 46 H 0.97002 * 120.00012 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 6 8.0112 -3.6028 3.0522 12 1 8.7818 -3.1058 2.4629 13 6 7.7079 -4.9732 2.4432 14 6 8.5043 -3.7814 4.4895 15 7 9.7878 -4.4960 4.4817 16 6 10.2932 -4.6854 5.8480 17 6 11.6083 -5.4196 5.7998 18 8 12.0786 -5.7519 4.7322 19 7 12.2620 -5.7069 6.9429 20 6 13.4587 -6.3743 6.8989 21 1 13.8775 -6.6703 5.9485 22 6 14.1329 -6.6702 8.0774 23 7 13.6231 -6.3105 9.2341 24 14 15.7631 -7.5802 8.0177 25 1 16.7437 -6.7882 7.2326 26 1 16.2737 -7.7722 9.3989 27 1 15.5676 -8.9042 7.3742 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6248 -2.4057 -0.5124 33 1 5.6151 -0.9265 -0.5120 34 1 6.8586 -2.8320 0.9328 35 1 6.9334 -1.8097 3.5645 36 1 5.9424 -3.2882 3.5651 37 1 6.9373 -5.4702 3.0326 38 1 7.3566 -4.8461 1.4193 39 1 8.6135 -5.5798 2.4443 40 1 8.6357 -2.8035 4.9526 41 1 7.7718 -4.3563 5.0562 42 1 10.4656 -4.0155 3.9091 43 1 10.4370 -3.7136 6.3202 44 1 9.5732 -5.2664 6.4244 45 1 11.8857 -5.4415 7.7966 46 1 14.0935 -6.5173 10.0568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732341029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:33 Heat of formation + Delta-G solvation = -77.761792 kcal Electronic energy + Delta-G solvation = -27522.704070 eV Core-core repulsion = 23254.715031 eV Total energy + Delta-G solvation = -4267.989039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.31119 -40.93865 -40.15094 -38.31493 -37.27732 -36.21574 -35.67492 -34.68746 -33.52137 -33.17257 -31.79587 -28.90307 -28.50406 -27.36401 -26.45311 -24.63209 -23.88290 -23.48805 -21.80908 -21.44755 -20.90863 -19.88918 -18.92550 -18.32615 -17.89342 -17.68920 -17.24142 -17.00386 -16.79253 -16.47451 -15.99084 -15.83187 -15.69765 -15.40002 -15.24706 -15.07157 -14.61541 -14.47242 -13.98844 -13.94709 -13.64253 -13.57879 -13.50774 -13.42075 -13.31381 -13.13659 -13.00683 -12.96134 -12.82556 -12.42606 -12.12509 -12.04684 -12.00181 -11.94612 -11.69840 -11.48980 -11.30513 -10.55401 -10.33219 -10.19039 -10.00941 -9.29283 -8.45938 -5.94829 0.04486 1.14721 1.26879 1.40578 1.42535 1.44993 1.53405 2.06307 2.09578 2.30238 2.77594 2.95858 3.21573 3.36546 3.53659 3.62423 3.81482 3.88475 3.99274 4.07955 4.11800 4.33027 4.33536 4.40100 4.48868 4.51154 4.55475 4.56883 4.59126 4.64087 4.69962 4.77624 4.86307 4.98064 5.03160 5.12027 5.23894 5.40223 5.41334 5.58150 5.89045 6.10429 6.40033 6.44873 6.60696 7.10134 7.13086 7.18713 7.57148 8.12086 8.71197 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.048000 B = 0.001305 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.190054 B =21458.336397 C =21653.022137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.172 3.828 3 N -0.334 5.334 4 N -0.314 5.314 5 C 0.179 3.821 6 C -0.040 4.040 7 C 0.517 3.483 8 O -0.587 6.587 9 N -0.703 5.703 10 C 0.131 3.869 11 C -0.087 4.087 12 H 0.088 0.912 13 C -0.137 4.137 14 C 0.064 3.936 15 N -0.675 5.675 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 O -0.228 6.228 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.422 0.578 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.345 0.655 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.792 8.996 -19.282 32.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.039 4.039 3 N -0.180 5.180 4 N -0.159 5.159 5 C -0.033 4.033 6 C -0.081 4.081 7 C 0.302 3.698 8 O -0.467 6.467 9 N -0.356 5.356 10 C 0.007 3.993 11 C -0.106 4.106 12 H 0.106 0.894 13 C -0.195 4.195 14 C -0.065 4.065 15 N -0.307 5.307 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.465 4.465 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.197 1.197 28 O -0.108 6.108 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.190 0.810 33 H 0.190 0.810 34 H 0.261 0.739 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.164 0.836 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.782 9.678 -19.155 32.783 hybrid contribution 0.959 -0.630 0.880 1.446 sum -23.823 9.048 -18.275 31.358 Atomic orbital electron populations 1.20738 0.76510 1.07182 1.07204 1.29062 0.99488 0.78719 0.96647 1.74311 0.96396 1.27230 1.20072 1.74257 1.13091 1.10553 1.18002 1.27578 0.85843 0.91159 0.98763 1.20387 0.89295 1.02646 0.95725 1.20519 0.80666 0.77744 0.90826 1.90783 1.55112 1.52903 1.47944 1.45706 1.27222 1.52882 1.09817 1.21263 0.96274 0.99091 0.82686 1.21205 0.96084 0.96952 0.96328 0.89404 1.21724 1.01671 0.95464 1.00593 1.21987 0.91019 0.96559 0.96936 1.60051 1.05882 1.54924 1.09893 1.21523 0.93486 0.99496 0.92309 1.20882 0.88224 0.84517 0.83849 1.90484 1.70606 1.59046 1.30676 1.41937 1.20096 1.51244 1.07820 1.19652 0.98359 1.34123 0.94391 0.90203 1.26037 1.02904 0.98275 0.93977 1.69671 1.41081 1.47335 0.98095 0.84994 0.77280 0.78485 0.77620 1.19622 1.19586 1.19690 1.84770 1.17567 1.38652 1.69801 0.85695 0.86971 0.86566 0.80952 0.80954 0.73921 0.92161 0.91763 0.93209 0.90993 0.92915 0.94321 0.90476 0.83632 0.91773 0.88002 0.77033 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 71.24 0.75 0.44 16 2 C 0.17 2.98 8.48 88.34 0.75 3.73 16 3 N -0.33 -8.19 12.22 -165.50 -2.02 -10.21 16 4 N -0.31 -7.93 12.22 -165.50 -2.02 -9.95 16 5 C 0.18 3.37 6.97 88.34 0.62 3.99 16 6 C -0.04 -0.33 6.33 29.10 0.18 -0.15 16 7 C 0.52 8.11 7.82 87.66 0.69 8.79 16 8 O -0.59 -16.11 16.03 -3.06 -0.05 -16.16 16 9 N -0.70 -7.50 5.28 -463.07 -2.45 -9.95 16 10 C 0.13 1.96 5.07 86.38 0.44 2.39 16 11 C -0.09 -1.30 2.57 -10.79 -0.03 -1.33 16 12 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 13 C -0.14 -2.14 8.95 71.98 0.64 -1.50 16 14 C 0.06 1.30 5.07 86.30 0.44 1.74 16 15 N -0.68 -19.31 5.58 -517.91 -2.89 -22.20 16 16 C 0.06 2.12 6.17 85.56 0.53 2.65 16 17 C 0.44 20.42 7.82 87.66 0.69 21.10 16 18 O -0.62 -33.63 15.78 -3.08 -0.05 -33.68 16 19 N -0.57 -29.19 5.29 -306.97 -1.62 -30.82 16 20 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.58 13.05 21.67 0.28 -49.29 16 24 Si 0.99 42.60 29.55 68.60 2.03 44.62 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 O -0.23 -4.20 10.87 -3.71 -0.04 -4.24 16 29 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.17 -0.07 8.14 -2.38 -0.02 -0.09 16 33 H 0.17 0.39 8.14 -2.38 -0.02 0.37 16 34 H 0.42 1.54 7.65 -92.71 -0.71 0.83 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.07 0.72 7.18 -2.39 -0.02 0.70 16 39 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 40 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.34 10.28 8.43 -89.69 -0.76 9.53 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.10 3.06 8.14 -2.39 -0.02 3.05 16 45 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 46 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -86.36 398.37 -3.02 -89.38 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -1.16 Total: 28.96 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 6.97 Total: 23.53 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -10.72 Total: -132.42 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.14 Total: -54.08 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -86.36 -3.02 -89.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732341029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.619 kcal (2) G-P(sol) polarization free energy of solvation -86.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds