Wall clock time and date at job start Tue Mar 31 2020 22:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30284 * 126.28325 * 2 1 4 4 N 1.28668 * 109.38027 * 179.97438 * 3 2 1 5 5 C 1.30275 * 109.37999 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.27755 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.02608 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47194 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47278 * 304.99476 * 11 10 9 13 13 C 1.53000 * 109.47260 * 64.99617 * 11 10 9 14 14 C 1.53000 * 109.47086 * 185.00163 * 11 10 9 15 15 N 1.46903 * 109.47234 * 175.00144 * 14 11 10 16 16 C 1.46895 * 110.99989 * 179.97438 * 15 14 11 17 17 C 1.50709 * 109.47104 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99933 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99925 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99575 * 179.97438 * 19 17 16 21 21 H 1.07992 * 120.00422 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99643 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00209 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99900 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46999 * 60.00233 * 24 22 20 26 26 H 1.48507 * 109.47186 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47137 * 299.99574 * 24 22 20 28 28 O 1.34357 * 126.28408 * 180.27973 * 2 1 3 29 29 H 1.08999 * 109.47063 * 89.97851 * 1 2 3 30 30 H 1.09006 * 109.47033 * 209.97751 * 1 2 3 31 31 H 1.08997 * 109.46905 * 329.97817 * 1 2 3 32 32 H 1.09002 * 109.47060 * 210.02572 * 6 5 4 33 33 H 1.09001 * 109.47380 * 330.02660 * 6 5 4 34 34 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47021 * 299.99722 * 10 9 7 36 36 H 1.09001 * 109.47001 * 59.99554 * 10 9 7 37 37 H 1.09000 * 109.47102 * 60.00300 * 13 11 10 38 38 H 1.09004 * 109.47094 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.47254 * 300.00134 * 13 11 10 40 40 H 1.09001 * 109.46604 * 294.99308 * 14 11 10 41 41 H 1.08993 * 109.47585 * 54.99922 * 14 11 10 42 42 H 1.00897 * 110.99648 * 303.94891 * 15 14 11 43 43 H 1.09005 * 109.46827 * 299.99353 * 16 15 14 44 44 H 1.08995 * 109.47696 * 59.99587 * 16 15 14 45 45 H 0.96996 * 120.00102 * 359.97438 * 19 17 16 46 46 H 0.96997 * 120.00170 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0502 0.0000 4 7 3.5091 0.6761 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 6 5.2350 -1.7427 1.4227 8 8 4.5803 -1.3036 2.3444 9 7 6.3364 -2.4794 1.6694 10 6 6.7418 -2.7510 3.0506 11 6 8.0133 -3.6021 3.0510 12 1 7.8471 -4.5038 2.4615 13 6 9.1645 -2.7993 2.4416 14 6 8.3667 -3.9903 4.4881 15 7 9.5164 -4.9047 4.4796 16 6 9.8854 -5.2991 5.8457 17 6 11.0661 -6.2344 5.7969 18 8 11.5521 -6.5425 4.7292 19 7 11.5813 -6.7294 6.9397 20 6 12.6551 -7.5807 6.8953 21 1 13.0878 -7.8549 5.9446 22 6 13.1867 -8.0905 8.0735 23 7 12.6604 -7.7564 9.2304 24 14 14.6493 -9.2509 8.0129 25 1 15.7982 -8.5659 7.3680 26 1 15.0228 -9.6491 9.3940 27 1 14.2899 -10.4598 7.2289 28 8 2.3021 -1.0830 -0.0053 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 4.6245 -2.4056 -0.5117 33 1 5.6147 -0.9265 -0.5122 34 1 6.8602 -2.8303 0.9321 35 1 6.9344 -1.8093 3.5647 36 1 5.9448 -3.2889 3.5641 37 1 9.3307 -1.8977 3.0311 38 1 10.0702 -3.4058 2.4414 39 1 8.9126 -2.5228 1.4178 40 1 8.6195 -3.0941 5.0547 41 1 7.5129 -4.4845 4.9514 42 1 9.3303 -5.7143 3.9070 43 1 10.1488 -4.4118 6.4214 44 1 9.0422 -5.8022 6.3189 45 1 11.1925 -6.4834 7.7936 46 1 13.0313 -8.1126 10.0528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732341030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:36 Heat of formation + Delta-G solvation = -42.305816 kcal Electronic energy + Delta-G solvation = -27520.034521 eV Core-core repulsion = 23253.582968 eV Total energy + Delta-G solvation = -4266.451552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.62467 -40.23742 -38.41179 -37.32594 -36.55630 -35.03516 -34.10465 -33.88848 -32.57234 -31.35056 -31.17152 -28.02578 -27.43114 -26.56673 -24.86458 -23.57495 -23.07686 -22.75813 -21.12715 -20.57065 -19.22700 -18.26127 -17.88628 -17.64688 -17.11601 -16.71853 -16.19387 -15.98684 -15.68454 -15.24426 -14.93216 -14.75579 -14.63825 -14.42404 -14.13397 -13.74002 -13.68557 -13.48406 -13.47047 -13.32139 -12.90336 -12.76291 -12.61050 -12.41447 -12.23287 -11.97412 -11.70932 -11.53477 -11.36845 -11.19574 -11.14165 -11.00391 -10.94556 -10.54990 -10.45474 -10.22763 -9.87134 -9.51933 -9.51454 -8.48798 -8.08832 -7.97492 -6.42968 -3.84059 0.68756 1.72196 1.96058 2.08178 2.70245 3.18989 3.24924 3.29038 3.29942 3.86966 3.89219 4.04589 4.13658 4.25711 4.26430 4.48729 4.63688 4.71766 4.72442 4.76222 4.87923 4.89819 5.05746 5.10096 5.14171 5.24130 5.26689 5.32979 5.39436 5.50953 5.63172 5.70298 5.81624 5.83918 5.90895 5.96181 6.12345 6.24764 6.34943 6.95145 7.15874 7.53580 7.61240 7.67043 7.89702 8.04544 8.59667 9.16245 9.52782 10.04049 10.74638 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.044674 B = 0.001310 C = 0.001294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.614056 B =21373.732949 C =21628.766643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.166 3.834 3 N -0.288 5.288 4 N -0.272 5.272 5 C 0.181 3.819 6 C -0.047 4.047 7 C 0.517 3.483 8 O -0.529 6.529 9 N -0.720 5.720 10 C 0.124 3.876 11 C -0.099 4.099 12 H 0.078 0.922 13 C -0.141 4.141 14 C 0.065 3.935 15 N -0.665 5.665 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 O -0.221 6.221 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.029 0.971 42 H 0.348 0.652 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.226 12.202 -18.231 31.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 N -0.136 5.136 4 N -0.118 5.118 5 C -0.030 4.030 6 C -0.088 4.088 7 C 0.301 3.699 8 O -0.405 6.405 9 N -0.372 5.372 10 C 0.000 4.000 11 C -0.119 4.119 12 H 0.096 0.904 13 C -0.198 4.198 14 C -0.065 4.065 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 O -0.100 6.100 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.240 0.760 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.168 0.832 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.226 0.774 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.472 13.988 -18.088 31.367 hybrid contribution -0.307 -2.432 0.584 2.520 sum -21.779 11.556 -17.504 30.237 Atomic orbital electron populations 1.20384 0.80039 1.05954 1.05267 1.28027 0.97858 0.79493 0.99092 1.74407 0.95942 1.25569 1.17667 1.74366 1.12404 1.08882 1.16179 1.26801 0.84703 0.91302 1.00212 1.20095 0.90318 1.00815 0.97540 1.20009 0.81091 0.78713 0.90095 1.90796 1.53309 1.50453 1.45919 1.45869 1.27550 1.53922 1.09881 1.21468 0.96403 1.00287 0.81819 1.21347 0.94030 0.98742 0.97749 0.90395 1.21773 0.98877 1.00199 0.98997 1.21896 0.91927 0.97594 0.95070 1.60030 1.37146 1.21262 1.11340 1.21667 0.96952 0.99111 0.90460 1.19803 0.87072 0.85470 0.85081 1.90515 1.63656 1.63287 1.29408 1.41858 1.29312 1.41758 1.07026 1.19656 1.07046 1.21641 0.94723 0.87969 1.25260 0.99333 0.98634 0.94630 1.69603 1.41983 1.45019 0.97678 0.85918 0.81014 0.80185 0.77099 1.19869 1.20967 1.19924 1.84743 1.17358 1.38384 1.69544 0.88205 0.88746 0.87377 0.85222 0.83890 0.76011 0.90865 0.91251 0.92691 0.90318 0.93646 0.90676 0.95267 0.83246 0.89576 0.93876 0.77448 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.18 16 2 C 0.17 1.48 8.48 -12.94 -0.11 1.37 16 3 N -0.29 -3.46 12.22 32.55 0.40 -3.06 16 4 N -0.27 -3.39 12.22 32.55 0.40 -2.99 16 5 C 0.18 1.78 6.97 -12.94 -0.09 1.69 16 6 C -0.05 -0.25 6.33 -29.03 -0.18 -0.44 16 7 C 0.52 4.48 7.82 -10.98 -0.09 4.39 16 8 O -0.53 -7.28 16.03 5.56 0.09 -7.19 16 9 N -0.72 -4.70 5.28 -60.30 -0.32 -5.02 16 10 C 0.12 1.02 5.06 -4.05 -0.02 1.00 16 11 C -0.10 -0.84 2.57 -90.62 -0.23 -1.08 16 12 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 13 C -0.14 -1.27 8.95 37.16 0.33 -0.93 16 14 C 0.07 0.71 5.07 -3.82 -0.02 0.69 16 15 N -0.67 -9.86 5.58 -115.06 -0.64 -10.50 16 16 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 17 C 0.44 10.19 7.82 -10.98 -0.09 10.10 16 18 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 19 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 O -0.22 -2.13 10.87 5.40 0.06 -2.07 16 29 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.40 1.45 7.66 -40.82 -0.31 1.14 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.90 7.75 -51.93 -0.40 0.50 16 39 H 0.04 0.31 7.18 -51.93 -0.37 -0.07 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.35 5.30 8.43 -39.29 -0.33 4.97 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -37.96 398.38 -5.42 -43.38 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.75 Total: 9.01 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.39 Total: 9.85 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.50 Total: -59.41 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.24 Total: -24.70 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.96 -5.42 -43.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732341030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.072 kcal (2) G-P(sol) polarization free energy of solvation -37.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds