Wall clock time and date at job start Tue Mar 31 2020 22:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30284 * 126.28325 * 2 1 4 4 N 1.28668 * 109.38027 * 179.97438 * 3 2 1 5 5 C 1.30275 * 109.37999 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.27755 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.02608 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47194 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47278 * 304.99476 * 11 10 9 13 13 C 1.53000 * 109.47260 * 64.99617 * 11 10 9 14 14 C 1.53000 * 109.47086 * 185.00163 * 11 10 9 15 15 N 1.46903 * 109.47234 * 175.00144 * 14 11 10 16 16 C 1.46895 * 110.99989 * 179.97438 * 15 14 11 17 17 C 1.50709 * 109.47104 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99933 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99925 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99575 * 179.97438 * 19 17 16 21 21 H 1.07992 * 120.00422 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99643 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00209 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99900 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46999 * 60.00233 * 24 22 20 26 26 H 1.48507 * 109.47186 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47137 * 299.99574 * 24 22 20 28 28 O 1.34357 * 126.28408 * 180.27973 * 2 1 3 29 29 H 1.08999 * 109.47063 * 89.97851 * 1 2 3 30 30 H 1.09006 * 109.47033 * 209.97751 * 1 2 3 31 31 H 1.08997 * 109.46905 * 329.97817 * 1 2 3 32 32 H 1.09002 * 109.47060 * 210.02572 * 6 5 4 33 33 H 1.09001 * 109.47380 * 330.02660 * 6 5 4 34 34 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47021 * 299.99722 * 10 9 7 36 36 H 1.09001 * 109.47001 * 59.99554 * 10 9 7 37 37 H 1.09000 * 109.47102 * 60.00300 * 13 11 10 38 38 H 1.09004 * 109.47094 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.47254 * 300.00134 * 13 11 10 40 40 H 1.09001 * 109.46604 * 294.99308 * 14 11 10 41 41 H 1.08993 * 109.47585 * 54.99922 * 14 11 10 42 42 H 1.00897 * 110.99648 * 303.94891 * 15 14 11 43 43 H 1.09005 * 109.46827 * 299.99353 * 16 15 14 44 44 H 1.08995 * 109.47696 * 59.99587 * 16 15 14 45 45 H 0.96996 * 120.00102 * 359.97438 * 19 17 16 46 46 H 0.96997 * 120.00170 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0502 0.0000 4 7 3.5091 0.6761 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 6 5.2350 -1.7427 1.4227 8 8 4.5803 -1.3036 2.3444 9 7 6.3364 -2.4794 1.6694 10 6 6.7418 -2.7510 3.0506 11 6 8.0133 -3.6021 3.0510 12 1 7.8471 -4.5038 2.4615 13 6 9.1645 -2.7993 2.4416 14 6 8.3667 -3.9903 4.4881 15 7 9.5164 -4.9047 4.4796 16 6 9.8854 -5.2991 5.8457 17 6 11.0661 -6.2344 5.7969 18 8 11.5521 -6.5425 4.7292 19 7 11.5813 -6.7294 6.9397 20 6 12.6551 -7.5807 6.8953 21 1 13.0878 -7.8549 5.9446 22 6 13.1867 -8.0905 8.0735 23 7 12.6604 -7.7564 9.2304 24 14 14.6493 -9.2509 8.0129 25 1 15.7982 -8.5659 7.3680 26 1 15.0228 -9.6491 9.3940 27 1 14.2899 -10.4598 7.2289 28 8 2.3021 -1.0830 -0.0053 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 4.6245 -2.4056 -0.5117 33 1 5.6147 -0.9265 -0.5122 34 1 6.8602 -2.8303 0.9321 35 1 6.9344 -1.8093 3.5647 36 1 5.9448 -3.2889 3.5641 37 1 9.3307 -1.8977 3.0311 38 1 10.0702 -3.4058 2.4414 39 1 8.9126 -2.5228 1.4178 40 1 8.6195 -3.0941 5.0547 41 1 7.5129 -4.4845 4.9514 42 1 9.3303 -5.7143 3.9070 43 1 10.1488 -4.4118 6.4214 44 1 9.0422 -5.8022 6.3189 45 1 11.1925 -6.4834 7.7936 46 1 13.0313 -8.1126 10.0528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732341030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:36 Heat of formation + Delta-G solvation = -77.705294 kcal Electronic energy + Delta-G solvation = -27521.569557 eV Core-core repulsion = 23253.582968 eV Total energy + Delta-G solvation = -4267.986589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.31273 -40.93935 -40.15063 -38.31531 -37.27860 -36.21536 -35.67481 -34.68774 -33.52096 -33.17219 -31.79650 -28.90260 -28.50325 -27.36732 -26.45272 -24.63180 -23.88492 -23.48861 -21.80778 -21.44813 -20.90828 -19.88854 -18.92548 -18.31456 -17.89310 -17.70110 -17.29023 -16.98475 -16.71618 -16.48460 -16.00764 -15.94973 -15.51953 -15.46905 -15.24646 -15.08342 -14.61350 -14.46740 -13.98887 -13.94097 -13.67371 -13.56426 -13.50951 -13.41785 -13.31480 -13.13453 -12.99442 -12.97440 -12.82554 -12.42597 -12.12509 -12.04880 -12.00170 -11.94569 -11.69925 -11.48928 -11.30471 -10.55294 -10.33078 -10.18893 -10.00869 -9.28675 -8.45851 -5.94814 0.04459 1.14720 1.26753 1.40615 1.42589 1.45086 1.53426 2.06448 2.09647 2.30270 2.77598 2.95954 3.21658 3.36458 3.53813 3.62498 3.81040 3.88783 3.99242 4.07891 4.11808 4.32927 4.33633 4.40244 4.48703 4.51320 4.55308 4.56733 4.59378 4.64155 4.69873 4.77828 4.86266 4.97840 5.03026 5.11824 5.24108 5.40216 5.41405 5.57672 5.89261 6.10663 6.40318 6.45645 6.60768 7.10219 7.13155 7.18724 7.57250 8.12171 8.71276 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.044674 B = 0.001310 C = 0.001294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.614056 B =21373.732949 C =21628.766643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.172 3.828 3 N -0.333 5.333 4 N -0.313 5.313 5 C 0.179 3.821 6 C -0.040 4.040 7 C 0.517 3.483 8 O -0.587 6.587 9 N -0.703 5.703 10 C 0.131 3.869 11 C -0.086 4.086 12 H 0.090 0.910 13 C -0.138 4.138 14 C 0.065 3.935 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.271 1.271 28 O -0.228 6.228 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.422 0.578 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.345 0.655 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.075 11.582 -19.266 32.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.039 4.039 3 N -0.180 5.180 4 N -0.159 5.159 5 C -0.034 4.034 6 C -0.081 4.081 7 C 0.303 3.697 8 O -0.467 6.467 9 N -0.356 5.356 10 C 0.007 3.993 11 C -0.105 4.105 12 H 0.108 0.892 13 C -0.196 4.196 14 C -0.065 4.065 15 N -0.308 5.308 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.465 4.465 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.196 1.196 28 O -0.108 6.108 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.190 0.810 33 H 0.191 0.809 34 H 0.261 0.739 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.164 0.836 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.313 13.386 -19.143 32.304 hybrid contribution -0.103 -2.219 0.875 2.388 sum -22.416 11.167 -18.268 30.998 Atomic orbital electron populations 1.20737 0.76517 1.07180 1.07199 1.29060 0.99486 0.78724 0.96665 1.74312 0.96395 1.27218 1.20059 1.74257 1.13083 1.10538 1.17989 1.27577 0.85835 0.91168 0.98775 1.20387 0.89296 1.02632 0.95736 1.20516 0.80647 0.77764 0.90819 1.90779 1.55200 1.52835 1.47907 1.45707 1.27064 1.53045 1.09821 1.21265 0.95901 0.99468 0.82694 1.21201 0.93827 0.99120 0.96345 0.89192 1.21731 0.97867 0.99388 1.00570 1.21982 0.90863 0.96717 0.96916 1.60021 1.39375 1.21484 1.09942 1.21519 0.94787 0.98187 0.92296 1.20883 0.87757 0.84975 0.83851 1.90483 1.65133 1.64540 1.30652 1.41939 1.29272 1.42069 1.07827 1.19650 1.08827 1.23653 0.94387 0.90203 1.26034 1.01552 0.99627 0.93978 1.69668 1.42901 1.45523 0.98092 0.84995 0.77659 0.78110 0.77619 1.19732 1.19590 1.19585 1.84766 1.17576 1.38669 1.69803 0.85707 0.86985 0.86553 0.80990 0.80930 0.73922 0.92099 0.91819 0.93393 0.92864 0.91066 0.90643 0.94143 0.83575 0.88098 0.91686 0.77032 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 71.24 0.75 0.44 16 2 C 0.17 2.98 8.48 88.34 0.75 3.73 16 3 N -0.33 -8.17 12.22 -165.50 -2.02 -10.20 16 4 N -0.31 -7.91 12.22 -165.50 -2.02 -9.93 16 5 C 0.18 3.37 6.97 88.34 0.62 3.99 16 6 C -0.04 -0.33 6.33 29.10 0.18 -0.15 16 7 C 0.52 8.10 7.82 87.66 0.69 8.79 16 8 O -0.59 -16.10 16.03 -3.02 -0.05 -16.15 16 9 N -0.70 -7.49 5.28 -463.07 -2.45 -9.94 16 10 C 0.13 1.95 5.06 86.38 0.44 2.39 16 11 C -0.09 -1.29 2.57 -10.79 -0.03 -1.32 16 12 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 13 C -0.14 -2.25 8.95 71.98 0.64 -1.60 16 14 C 0.06 1.30 5.07 86.30 0.44 1.74 16 15 N -0.68 -19.26 5.58 -517.93 -2.89 -22.15 16 16 C 0.06 2.12 6.17 85.56 0.53 2.65 16 17 C 0.44 20.38 7.82 87.66 0.69 21.07 16 18 O -0.62 -33.58 15.78 -3.06 -0.05 -33.63 16 19 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 20 C -0.34 -18.93 9.68 84.04 0.81 -18.11 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.53 13.05 21.66 0.28 -49.24 16 24 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 O -0.23 -4.21 10.87 -3.59 -0.04 -4.24 16 29 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.17 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.17 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.42 1.54 7.66 -92.70 -0.71 0.83 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 1.17 7.75 -2.38 -0.02 1.15 16 39 H 0.07 0.77 7.18 -2.39 -0.02 0.75 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.35 10.18 8.43 -89.70 -0.76 9.43 16 43 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.40 19.16 7.90 -92.71 -0.73 18.42 16 46 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -86.30 398.38 -3.02 -89.32 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -1.16 Total: 28.94 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 6.97 Total: 23.42 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -10.72 Total: -132.23 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -0.14 Total: -54.02 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -86.30 -3.02 -89.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732341030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.614 kcal (2) G-P(sol) polarization free energy of solvation -86.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds