Wall clock time and date at job start Tue Mar 31 2020 22:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30276 * 126.28121 * 2 1 4 4 N 1.28668 * 109.38057 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37893 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.27996 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46766 * 89.97955 * 6 5 4 8 8 O 1.21279 * 120.00136 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00039 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00089 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47041 * 34.61061 * 10 9 7 12 12 C 1.53000 * 109.47597 * 274.60578 * 10 9 7 13 13 C 1.53004 * 109.47230 * 154.60845 * 10 9 7 14 14 N 1.46904 * 109.46801 * 305.18283 * 13 10 9 15 15 C 1.46897 * 110.99962 * 163.93230 * 14 13 10 16 16 C 1.46895 * 111.00338 * 287.89071 * 14 13 10 17 17 C 1.50702 * 109.47331 * 169.99969 * 16 14 13 18 18 O 1.21294 * 119.99767 * 0.02562 * 17 16 14 19 19 N 1.34774 * 120.00209 * 180.02562 * 17 16 14 20 20 C 1.37097 * 119.99698 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00431 * 359.97438 * 20 19 17 22 22 C 1.38958 * 119.99781 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99530 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00214 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46869 * 89.99684 * 24 22 20 26 26 H 1.48495 * 109.47476 * 209.99991 * 24 22 20 27 27 H 1.48497 * 109.46979 * 330.00036 * 24 22 20 28 28 O 1.34363 * 107.43924 * 0.02562 * 5 4 3 29 29 H 1.09000 * 109.47164 * 90.02456 * 1 2 3 30 30 H 1.09005 * 109.47182 * 210.02197 * 1 2 3 31 31 H 1.08999 * 109.47082 * 330.02230 * 1 2 3 32 32 H 1.08997 * 109.47442 * 209.97730 * 6 5 4 33 33 H 1.08998 * 109.47449 * 329.98287 * 6 5 4 34 34 H 0.96998 * 119.99462 * 0.02562 * 9 7 6 35 35 H 1.09008 * 109.46774 * 59.99762 * 12 10 9 36 36 H 1.09001 * 109.47285 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.47319 * 300.00313 * 12 10 9 38 38 H 1.08993 * 109.47286 * 65.17968 * 13 10 9 39 39 H 1.08994 * 109.47330 * 185.18689 * 13 10 9 40 40 H 1.09009 * 109.47074 * 54.89814 * 15 14 13 41 41 H 1.08994 * 109.47525 * 174.89897 * 15 14 13 42 42 H 1.09003 * 109.47751 * 294.89984 * 15 14 13 43 43 H 1.09003 * 109.47427 * 290.00034 * 16 14 13 44 44 H 1.08995 * 109.47086 * 50.00036 * 16 14 13 45 45 H 0.96995 * 119.99920 * 359.97438 * 19 17 16 46 46 H 0.97004 * 119.99437 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5653 -0.6254 0.0015 6 6 4.8176 -1.4638 0.0018 7 6 5.2355 -1.7418 1.4228 8 8 4.5807 -1.3028 2.3444 9 7 6.3365 -2.4791 1.6694 10 6 6.7431 -2.7489 3.0507 11 1 5.8567 -2.8563 3.6760 12 6 7.5944 -1.5876 3.5679 13 6 7.5606 -4.0413 3.0986 14 7 6.7886 -5.1319 2.4880 15 6 7.6543 -6.2747 2.1682 16 6 5.6768 -5.5405 3.3567 17 6 4.7689 -6.4781 2.6033 18 8 5.0234 -6.7770 1.4556 19 7 3.6742 -6.9846 3.2047 20 6 2.8487 -7.8380 2.5193 21 1 3.0752 -8.1042 1.4975 22 6 1.7203 -8.3606 3.1395 23 7 1.4450 -8.0372 4.3831 24 14 0.5951 -9.5229 2.2056 25 1 1.0499 -10.9219 2.4086 26 1 -0.7947 -9.3764 2.7077 27 1 0.6355 -9.1944 0.7580 28 8 2.3021 -1.0831 0.0009 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.6242 -2.4060 -0.5110 33 1 5.6145 -0.9269 -0.5128 34 1 6.8599 -2.8305 0.9323 35 1 7.0120 -0.6668 3.5338 36 1 7.8966 -1.7881 4.5958 37 1 8.4808 -1.4802 2.9426 38 1 8.4914 -3.9030 2.5487 39 1 7.7847 -4.2913 4.1355 40 1 8.1891 -6.5877 3.0650 41 1 7.0449 -7.1008 1.8017 42 1 8.3714 -5.9839 1.4005 43 1 6.0711 -6.0465 4.2379 44 1 5.1140 -4.6595 3.6651 45 1 3.4710 -6.7459 4.1225 46 1 0.6571 -8.4017 4.8159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733038605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:04 Heat of formation + Delta-G solvation = -26.148096 kcal Electronic energy + Delta-G solvation = -29877.456350 eV Core-core repulsion = 25611.705449 eV Total energy + Delta-G solvation = -4265.750901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.23539 -39.95682 -38.65292 -37.00186 -36.16230 -34.80798 -33.79968 -33.69664 -31.78611 -31.26464 -30.31043 -28.09022 -27.30184 -26.99204 -24.73068 -23.41928 -22.66558 -22.38683 -21.11281 -20.50024 -19.14494 -17.91005 -17.86880 -17.22463 -16.81894 -16.29306 -16.17975 -15.62003 -15.27149 -14.90986 -14.64102 -14.57905 -14.44481 -14.00486 -13.82733 -13.65252 -13.51982 -13.34886 -12.97494 -12.90605 -12.81932 -12.39539 -12.28865 -12.20186 -12.07603 -11.87630 -11.84728 -11.51681 -11.49337 -11.24603 -11.05733 -11.01828 -10.68168 -10.41298 -10.23951 -10.09180 -9.49564 -9.47493 -9.06936 -8.48439 -8.01889 -7.93090 -6.43374 -3.84361 1.08385 2.14427 2.31881 2.56961 3.14950 3.15479 3.24389 3.29843 3.69872 3.87194 3.93519 4.20301 4.24955 4.60271 4.66669 4.71160 4.92952 5.02617 5.07383 5.08787 5.14978 5.18095 5.25556 5.27787 5.37718 5.42854 5.49958 5.52644 5.58122 5.63769 5.68230 5.70823 5.87978 5.93505 5.97456 6.07077 6.25247 6.42250 6.48955 7.17475 7.27943 7.46805 7.52995 8.03953 8.17220 8.25854 8.59390 9.15880 9.52513 10.03740 10.74328 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007424 B = 0.003794 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.872648 B = 7377.581444 C =10346.819906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.165 3.835 3 N -0.292 5.292 4 N -0.279 5.279 5 C 0.188 3.812 6 C -0.049 4.049 7 C 0.523 3.477 8 O -0.535 6.535 9 N -0.699 5.699 10 C 0.146 3.854 11 H 0.089 0.911 12 C -0.162 4.162 13 C 0.043 3.957 14 N -0.516 5.516 15 C 0.024 3.976 16 C 0.042 3.958 17 C 0.445 3.555 18 O -0.579 6.579 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.270 1.270 28 O -0.215 6.215 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.406 0.594 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.014 0.986 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 12.611 -4.972 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.046 4.046 3 N -0.140 5.140 4 N -0.125 5.125 5 C -0.024 4.024 6 C -0.090 4.090 7 C 0.307 3.693 8 O -0.412 6.412 9 N -0.350 5.350 10 C 0.041 3.959 11 H 0.107 0.893 12 C -0.221 4.221 13 C -0.086 4.086 14 N -0.239 5.239 15 C -0.124 4.124 16 C -0.089 4.089 17 C 0.230 3.770 18 O -0.464 6.464 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 O -0.094 6.094 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.241 0.759 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.107 14.052 -5.390 17.095 hybrid contribution -0.512 -2.194 0.722 2.366 sum 7.596 11.858 -4.668 14.836 Atomic orbital electron populations 1.20372 0.80223 1.05945 1.05152 1.27982 0.97873 0.79556 0.99160 1.74345 0.96005 1.25632 1.18034 1.74314 1.12393 1.08918 1.16917 1.26834 0.84841 0.91135 0.99570 1.20104 0.89993 1.00940 0.97930 1.19904 0.80829 0.78672 0.89894 1.90764 1.53290 1.51289 1.45847 1.45586 1.27497 1.52814 1.09062 1.20996 0.98289 0.93411 0.83191 0.89343 1.22153 0.99916 0.98773 1.01210 1.22492 0.96355 0.90983 0.98765 1.61563 1.09777 1.08964 1.43644 1.22518 0.96460 0.94662 0.98764 1.21920 0.93463 0.99387 0.94123 1.19681 0.83857 0.85317 0.88134 1.90472 1.74244 1.63632 1.18028 1.41874 1.21561 1.41526 1.14995 1.19680 1.03238 1.21282 0.98692 0.87936 1.25264 0.98040 0.98650 0.95938 1.69619 1.28161 1.44850 1.11546 0.85871 0.78889 0.79989 0.79618 1.20416 1.20907 1.19418 1.84807 1.17339 1.38144 1.69062 0.88325 0.88570 0.87579 0.84939 0.84303 0.75901 0.91795 0.91572 0.92294 0.90119 0.93273 0.96778 0.88638 0.92089 0.93467 0.89558 0.77534 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.16 2.23 8.48 -12.94 -0.11 2.12 16 3 N -0.29 -4.59 12.22 32.55 0.40 -4.20 16 4 N -0.28 -4.49 12.22 32.55 0.40 -4.10 16 5 C 0.19 2.75 6.97 -12.94 -0.09 2.66 16 6 C -0.05 -0.52 6.33 -29.03 -0.18 -0.71 16 7 C 0.52 7.14 7.79 -10.98 -0.09 7.05 16 8 O -0.54 -9.73 15.69 5.56 0.09 -9.64 16 9 N -0.70 -7.83 4.79 -53.81 -0.26 -8.09 16 10 C 0.15 1.66 2.52 -67.93 -0.17 1.49 16 11 H 0.09 1.26 6.22 -51.93 -0.32 0.94 16 12 C -0.16 -1.52 9.49 37.16 0.35 -1.17 16 13 C 0.04 0.46 4.53 -3.82 -0.02 0.44 16 14 N -0.52 -7.54 4.17 -244.37 -1.02 -8.56 16 15 C 0.02 0.34 9.19 60.06 0.55 0.89 16 16 C 0.04 0.74 5.30 -4.98 -0.03 0.71 16 17 C 0.44 10.22 7.42 -10.99 -0.08 10.13 16 18 O -0.58 -14.85 13.96 5.54 0.08 -14.77 16 19 N -0.56 -14.20 5.29 -10.96 -0.06 -14.25 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 23 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 24 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 28 O -0.21 -3.29 10.87 5.38 0.06 -3.23 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.41 3.62 8.61 -40.82 -0.35 3.27 16 35 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.70 7.99 -51.93 -0.42 0.29 16 39 H 0.05 0.50 8.05 -51.93 -0.42 0.08 16 40 H 0.01 0.18 8.13 -51.92 -0.42 -0.24 16 41 H 0.10 1.74 5.79 -51.93 -0.30 1.44 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.09 1.48 6.50 -51.93 -0.34 1.14 16 45 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -36.83 392.91 -5.05 -41.87 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.63 Total: 11.33 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 0.28 Total: 15.65 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.18 Total: -63.01 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: 0.22 Total: -27.64 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.83 -5.05 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733038605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.727 kcal (2) G-P(sol) polarization free energy of solvation -36.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds