Wall clock time and date at job start Tue Mar 31 2020 22:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30276 * 126.28121 * 2 1 4 4 N 1.28668 * 109.38057 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37893 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.27996 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46766 * 89.97955 * 6 5 4 8 8 O 1.21279 * 120.00136 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00039 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00089 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47041 * 34.61061 * 10 9 7 12 12 C 1.53000 * 109.47597 * 274.60578 * 10 9 7 13 13 C 1.53004 * 109.47230 * 154.60845 * 10 9 7 14 14 N 1.46904 * 109.46801 * 305.18283 * 13 10 9 15 15 C 1.46897 * 110.99962 * 163.93230 * 14 13 10 16 16 C 1.46895 * 111.00338 * 287.89071 * 14 13 10 17 17 C 1.50702 * 109.47331 * 169.99969 * 16 14 13 18 18 O 1.21294 * 119.99767 * 0.02562 * 17 16 14 19 19 N 1.34774 * 120.00209 * 180.02562 * 17 16 14 20 20 C 1.37097 * 119.99698 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00431 * 359.97438 * 20 19 17 22 22 C 1.38958 * 119.99781 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99530 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00214 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46869 * 89.99684 * 24 22 20 26 26 H 1.48495 * 109.47476 * 209.99991 * 24 22 20 27 27 H 1.48497 * 109.46979 * 330.00036 * 24 22 20 28 28 O 1.34363 * 107.43924 * 0.02562 * 5 4 3 29 29 H 1.09000 * 109.47164 * 90.02456 * 1 2 3 30 30 H 1.09005 * 109.47182 * 210.02197 * 1 2 3 31 31 H 1.08999 * 109.47082 * 330.02230 * 1 2 3 32 32 H 1.08997 * 109.47442 * 209.97730 * 6 5 4 33 33 H 1.08998 * 109.47449 * 329.98287 * 6 5 4 34 34 H 0.96998 * 119.99462 * 0.02562 * 9 7 6 35 35 H 1.09008 * 109.46774 * 59.99762 * 12 10 9 36 36 H 1.09001 * 109.47285 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.47319 * 300.00313 * 12 10 9 38 38 H 1.08993 * 109.47286 * 65.17968 * 13 10 9 39 39 H 1.08994 * 109.47330 * 185.18689 * 13 10 9 40 40 H 1.09009 * 109.47074 * 54.89814 * 15 14 13 41 41 H 1.08994 * 109.47525 * 174.89897 * 15 14 13 42 42 H 1.09003 * 109.47751 * 294.89984 * 15 14 13 43 43 H 1.09003 * 109.47427 * 290.00034 * 16 14 13 44 44 H 1.08995 * 109.47086 * 50.00036 * 16 14 13 45 45 H 0.96995 * 119.99920 * 359.97438 * 19 17 16 46 46 H 0.97004 * 119.99437 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5653 -0.6254 0.0015 6 6 4.8176 -1.4638 0.0018 7 6 5.2355 -1.7418 1.4228 8 8 4.5807 -1.3028 2.3444 9 7 6.3365 -2.4791 1.6694 10 6 6.7431 -2.7489 3.0507 11 1 5.8567 -2.8563 3.6760 12 6 7.5944 -1.5876 3.5679 13 6 7.5606 -4.0413 3.0986 14 7 6.7886 -5.1319 2.4880 15 6 7.6543 -6.2747 2.1682 16 6 5.6768 -5.5405 3.3567 17 6 4.7689 -6.4781 2.6033 18 8 5.0234 -6.7770 1.4556 19 7 3.6742 -6.9846 3.2047 20 6 2.8487 -7.8380 2.5193 21 1 3.0752 -8.1042 1.4975 22 6 1.7203 -8.3606 3.1395 23 7 1.4450 -8.0372 4.3831 24 14 0.5951 -9.5229 2.2056 25 1 1.0499 -10.9219 2.4086 26 1 -0.7947 -9.3764 2.7077 27 1 0.6355 -9.1944 0.7580 28 8 2.3021 -1.0831 0.0009 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.6242 -2.4060 -0.5110 33 1 5.6145 -0.9269 -0.5128 34 1 6.8599 -2.8305 0.9323 35 1 7.0120 -0.6668 3.5338 36 1 7.8966 -1.7881 4.5958 37 1 8.4808 -1.4802 2.9426 38 1 8.4914 -3.9030 2.5487 39 1 7.7847 -4.2913 4.1355 40 1 8.1891 -6.5877 3.0650 41 1 7.0449 -7.1008 1.8017 42 1 8.3714 -5.9839 1.4005 43 1 6.0711 -6.0465 4.2379 44 1 5.1140 -4.6595 3.6651 45 1 3.4710 -6.7459 4.1225 46 1 0.6571 -8.4017 4.8159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733038605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:03 Heat of formation + Delta-G solvation = -60.092990 kcal Electronic energy + Delta-G solvation = -29878.928311 eV Core-core repulsion = 25611.705449 eV Total energy + Delta-G solvation = -4267.222862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.32276 -41.03571 -40.28270 -38.31966 -37.28837 -36.15842 -35.55284 -34.68203 -33.27305 -32.71245 -31.16931 -29.58285 -28.24669 -27.95059 -26.60140 -24.50469 -23.73197 -23.51298 -22.17532 -21.57652 -20.84313 -19.84549 -18.96744 -18.29615 -18.02459 -17.67240 -17.31785 -16.72391 -16.62122 -16.45264 -16.01086 -15.65426 -15.60779 -15.40810 -15.21837 -15.01846 -14.75190 -14.14854 -14.00738 -13.75594 -13.65824 -13.60534 -13.52686 -13.40801 -13.22033 -13.08810 -13.00126 -12.90227 -12.81811 -12.65563 -12.45706 -12.35817 -12.13324 -12.09373 -11.69756 -11.43366 -11.20800 -10.52800 -10.25724 -10.05739 -9.99453 -9.20548 -8.46425 -5.95190 0.03493 1.16245 1.25868 1.37200 1.40595 1.53425 1.53961 2.05684 2.21019 2.28475 2.76045 2.80614 3.20554 3.32466 3.37792 3.70434 3.80973 3.84598 4.09101 4.14414 4.18985 4.31035 4.33021 4.37646 4.42098 4.52215 4.52348 4.56477 4.59509 4.67267 4.69041 4.74482 4.80176 4.85191 5.00246 5.06540 5.25245 5.30820 5.40532 5.52696 5.87691 6.06958 6.21964 6.53821 6.59818 7.12837 7.15753 7.22168 7.56534 8.11404 8.71274 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007424 B = 0.003794 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.872648 B = 7377.581444 C =10346.819906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.167 3.833 3 N -0.325 5.325 4 N -0.304 5.304 5 C 0.180 3.820 6 C -0.044 4.044 7 C 0.517 3.483 8 O -0.589 6.589 9 N -0.686 5.686 10 C 0.144 3.856 11 H 0.055 0.945 12 C -0.152 4.152 13 C 0.050 3.950 14 N -0.527 5.527 15 C 0.028 3.972 16 C 0.057 3.943 17 C 0.444 3.556 18 O -0.607 6.607 19 N -0.578 5.578 20 C -0.330 4.330 21 H 0.082 0.918 22 C -0.015 4.015 23 N -0.924 5.924 24 Si 0.992 3.008 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.271 1.271 28 O -0.235 6.235 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.179 0.821 34 H 0.420 0.580 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.691 12.498 -5.468 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 N -0.172 5.172 4 N -0.150 5.150 5 C -0.032 4.032 6 C -0.084 4.084 7 C 0.302 3.698 8 O -0.470 6.470 9 N -0.337 5.337 10 C 0.039 3.961 11 H 0.073 0.927 12 C -0.210 4.210 13 C -0.078 4.078 14 N -0.251 5.251 15 C -0.119 4.119 16 C -0.075 4.075 17 C 0.231 3.769 18 O -0.492 6.492 19 N -0.216 5.216 20 C -0.459 4.459 21 H 0.100 0.900 22 C -0.214 4.214 23 N -0.565 5.565 24 Si 0.816 3.184 25 H -0.195 1.195 26 H -0.198 1.198 27 H -0.196 1.196 28 O -0.115 6.115 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.169 0.831 33 H 0.196 0.804 34 H 0.257 0.743 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.448 13.950 -5.896 17.850 hybrid contribution -0.846 -2.135 0.871 2.456 sum 8.602 11.815 -5.025 15.455 Atomic orbital electron populations 1.20728 0.76722 1.07021 1.07207 1.29047 0.99534 0.78699 0.97044 1.74266 0.96297 1.26723 1.19890 1.74218 1.12941 1.09836 1.17996 1.27528 0.85617 0.91228 0.98816 1.20358 0.89628 1.01882 0.96577 1.20372 0.80759 0.78194 0.90438 1.90741 1.55076 1.53582 1.47614 1.45558 1.26776 1.51634 1.09705 1.21029 0.97500 0.94871 0.82732 0.92699 1.22058 0.99885 0.96548 1.02540 1.22568 0.96589 0.88605 1.00023 1.61514 1.09920 1.09918 1.43748 1.22421 0.96005 0.93260 1.00237 1.21711 0.93629 0.97959 0.94182 1.20687 0.83413 0.84746 0.88019 1.90450 1.74790 1.64454 1.19531 1.41985 1.22386 1.42140 1.15065 1.19667 1.04812 1.23086 0.98375 0.90022 1.26056 0.98866 0.99747 0.96763 1.69692 1.28716 1.45571 1.12530 0.84936 0.77224 0.78102 0.78151 1.19524 1.19796 1.19554 1.84826 1.18002 1.39074 1.69564 0.85587 0.87824 0.86007 0.83117 0.80375 0.74264 0.94140 0.90173 0.89848 0.86746 0.91769 0.95051 0.93018 0.89327 0.91728 0.89408 0.77466 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.51 71.24 0.75 -0.15 16 2 C 0.17 4.56 8.48 88.34 0.75 5.31 16 3 N -0.32 -10.41 12.22 -165.50 -2.02 -12.43 16 4 N -0.30 -9.99 12.22 -165.50 -2.02 -12.02 16 5 C 0.18 5.33 6.97 88.34 0.62 5.94 16 6 C -0.04 -0.91 6.33 29.10 0.18 -0.72 16 7 C 0.52 13.94 7.79 87.66 0.68 14.62 16 8 O -0.59 -22.09 15.69 -3.03 -0.05 -22.14 16 9 N -0.69 -14.27 4.79 -442.53 -2.12 -16.39 16 10 C 0.14 3.03 2.52 44.99 0.11 3.14 16 11 H 0.05 1.56 6.22 -2.39 -0.01 1.54 16 12 C -0.15 -2.51 9.49 71.98 0.68 -1.82 16 13 C 0.05 0.90 4.53 86.30 0.39 1.29 16 14 N -0.53 -14.28 4.17 -927.06 -3.87 -18.15 16 15 C 0.03 0.75 9.19 127.69 1.17 1.92 16 16 C 0.06 1.92 5.30 85.56 0.45 2.38 16 17 C 0.44 20.71 7.42 87.66 0.65 21.36 16 18 O -0.61 -31.67 13.96 -3.07 -0.04 -31.71 16 19 N -0.58 -29.92 5.29 -306.98 -1.62 -31.54 16 20 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 23 N -0.92 -50.64 13.05 21.67 0.28 -50.36 16 24 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 O -0.23 -7.31 10.87 -3.66 -0.04 -7.35 16 29 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.15 2.53 8.14 -2.39 -0.02 2.52 16 33 H 0.18 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.42 6.32 8.61 -92.71 -0.80 5.53 16 35 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 1.39 7.99 -2.39 -0.02 1.37 16 39 H 0.06 1.04 8.05 -2.39 -0.02 1.02 16 40 H 0.03 0.71 8.13 -2.38 -0.02 0.69 16 41 H 0.05 1.85 5.79 -2.39 -0.01 1.84 16 42 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 44 H 0.09 3.00 6.50 -2.39 -0.02 2.99 16 45 H 0.39 19.76 7.90 -92.71 -0.73 19.03 16 46 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -84.30 392.91 -2.25 -86.55 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.50 Total: 35.57 kcal Atomic # 6 Polarization: 27.34 SS G_CDS: 7.73 Total: 35.07 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -11.38 Total: -140.89 kcal Atomic # 8 Polarization: -61.07 SS G_CDS: -0.13 Total: -61.20 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -84.30 -2.25 -86.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733038605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.454 kcal (2) G-P(sol) polarization free energy of solvation -84.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds