Wall clock time and date at job start Tue Mar 31 2020 22:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30274 * 126.27911 * 2 1 4 4 N 1.28673 * 109.38255 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37506 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.27739 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47736 * 89.97116 * 6 5 4 8 8 O 1.21288 * 119.99590 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00184 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99890 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47566 * 322.99116 * 10 9 7 12 12 C 1.53006 * 109.46959 * 82.98911 * 10 9 7 13 13 C 1.52995 * 109.47528 * 202.98793 * 10 9 7 14 14 N 1.46905 * 109.46843 * 55.16312 * 13 10 9 15 15 C 1.46896 * 111.00092 * 198.92937 * 14 13 10 16 16 C 1.46903 * 110.99827 * 74.97575 * 14 13 10 17 17 C 1.50701 * 109.46951 * 189.99899 * 16 14 13 18 18 O 1.21295 * 119.99910 * 359.97438 * 17 16 14 19 19 N 1.34775 * 119.99570 * 180.02562 * 17 16 14 20 20 C 1.37101 * 119.99736 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99646 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00143 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00073 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00333 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47360 * 89.99567 * 24 22 20 26 26 H 1.48500 * 109.47683 * 209.99863 * 24 22 20 27 27 H 1.48500 * 109.47065 * 330.00109 * 24 22 20 28 28 O 1.34355 * 126.28576 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46980 * 90.02779 * 1 2 3 30 30 H 1.09001 * 109.46921 * 210.01810 * 1 2 3 31 31 H 1.08994 * 109.47547 * 330.02641 * 1 2 3 32 32 H 1.09005 * 109.47237 * 209.97191 * 6 5 4 33 33 H 1.09002 * 109.47170 * 329.96222 * 6 5 4 34 34 H 0.96993 * 120.00116 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47090 * 60.00071 * 12 10 9 36 36 H 1.09004 * 109.47091 * 179.97438 * 12 10 9 37 37 H 1.08996 * 109.47287 * 299.99558 * 12 10 9 38 38 H 1.09000 * 109.47455 * 175.16483 * 13 10 9 39 39 H 1.08997 * 109.47171 * 295.16722 * 13 10 9 40 40 H 1.09006 * 109.47214 * 54.11891 * 15 14 13 41 41 H 1.08996 * 109.47721 * 174.12163 * 15 14 13 42 42 H 1.09005 * 109.47310 * 294.12581 * 15 14 13 43 43 H 1.08996 * 109.47095 * 309.99924 * 16 14 13 44 44 H 1.09008 * 109.46627 * 69.99980 * 16 14 13 45 45 H 0.97000 * 120.00250 * 0.02562 * 19 17 16 46 46 H 0.97003 * 120.00368 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6762 0.0005 5 6 3.5654 -0.6253 0.0004 6 6 4.8177 -1.4636 0.0014 7 6 5.2343 -1.7428 1.4225 8 8 4.5790 -1.3038 2.3438 9 7 6.3356 -2.4794 1.6695 10 6 6.7408 -2.7503 3.0510 11 1 6.5421 -1.8731 3.6667 12 6 5.9478 -3.9424 3.5907 13 6 8.2359 -3.0727 3.0901 14 7 8.9895 -1.9770 2.4660 15 6 10.3357 -2.4183 2.0774 16 6 9.0545 -0.8094 3.3552 17 6 9.6133 0.3679 2.5984 18 8 9.9271 0.2461 1.4330 19 7 9.7654 1.5557 3.2168 20 6 10.2743 2.6266 2.5284 21 1 10.5529 2.5184 1.4905 22 6 10.4316 3.8511 3.1660 23 7 10.0932 3.9826 4.4289 24 14 11.1243 5.3104 2.2280 25 1 10.0128 6.0641 1.5940 26 1 11.8543 6.2006 3.1660 27 1 12.0564 4.8267 1.1780 28 8 2.3021 -1.0830 0.0005 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3634 0.8901 0.5134 32 1 4.6249 -2.4055 -0.5124 33 1 5.6150 -0.9263 -0.5122 34 1 6.8598 -2.8302 0.9327 35 1 6.1466 -4.8196 2.9751 36 1 6.2497 -4.1442 4.6185 37 1 4.8827 -3.7127 3.5630 38 1 8.5555 -3.1898 4.1256 39 1 8.4224 -3.9982 2.5455 40 1 10.2597 -3.3044 1.4471 41 1 10.8342 -1.6215 1.5255 42 1 10.9121 -2.6568 2.9713 43 1 8.0535 -0.5692 3.7132 44 1 9.6998 -1.0350 4.2044 45 1 9.5156 1.6527 4.1490 46 1 10.2027 4.8375 4.8740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733038606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:07 Heat of formation + Delta-G solvation = -24.608163 kcal Electronic energy + Delta-G solvation = -29695.481808 eV Core-core repulsion = 25429.797684 eV Total energy + Delta-G solvation = -4265.684125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.26582 -39.95463 -38.60277 -36.97250 -36.19811 -34.79676 -33.74672 -33.72238 -31.82022 -31.19720 -30.33796 -28.04968 -27.34132 -26.98569 -24.67529 -23.44461 -22.70839 -22.37335 -21.11431 -20.48407 -19.10496 -17.93632 -17.80904 -17.27133 -16.83528 -16.38620 -16.13884 -15.55085 -15.18402 -15.05201 -14.66584 -14.53787 -14.42222 -13.97028 -13.85576 -13.60876 -13.46060 -13.44391 -13.08952 -12.91376 -12.82242 -12.39444 -12.29432 -12.16696 -12.06746 -11.86354 -11.81827 -11.44780 -11.42347 -11.24447 -11.00637 -10.97169 -10.66624 -10.34915 -10.16956 -10.10658 -9.50479 -9.42642 -9.07357 -8.45491 -7.96123 -7.86227 -6.36326 -3.77062 1.04437 2.07190 2.34455 2.55811 3.13611 3.22889 3.31255 3.36178 3.67587 3.92804 3.96917 4.23713 4.26571 4.52776 4.63669 4.70733 4.88246 4.95947 5.03793 5.09714 5.12403 5.18978 5.28424 5.30048 5.36177 5.37724 5.47102 5.51642 5.56407 5.62396 5.63426 5.73188 5.87951 5.93368 6.00597 6.05271 6.30661 6.44236 6.52380 7.19793 7.30888 7.46610 7.60263 8.10996 8.16498 8.27911 8.66311 9.23064 9.59408 10.10536 10.81461 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008318 B = 0.003303 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.306808 B = 8474.826769 C =11016.900083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.157 3.843 3 N -0.286 5.286 4 N -0.266 5.266 5 C 0.185 3.815 6 C -0.047 4.047 7 C 0.522 3.478 8 O -0.536 6.536 9 N -0.698 5.698 10 C 0.147 3.853 11 H 0.088 0.912 12 C -0.161 4.161 13 C 0.042 3.958 14 N -0.516 5.516 15 C 0.023 3.977 16 C 0.043 3.957 17 C 0.445 3.555 18 O -0.579 6.579 19 N -0.563 5.563 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.270 1.270 28 O -0.224 6.224 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.146 0.854 34 H 0.406 0.594 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.015 0.985 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.646 -18.627 -5.092 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 N -0.133 5.133 4 N -0.112 5.112 5 C -0.026 4.026 6 C -0.088 4.088 7 C 0.306 3.694 8 O -0.412 6.412 9 N -0.349 5.349 10 C 0.042 3.958 11 H 0.106 0.894 12 C -0.220 4.220 13 C -0.087 4.087 14 N -0.239 5.239 15 C -0.125 4.125 16 C -0.088 4.088 17 C 0.230 3.770 18 O -0.464 6.464 19 N -0.199 5.199 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.194 1.194 28 O -0.104 6.104 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.241 0.759 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.033 0.967 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.224 0.776 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.745 -16.837 -5.503 22.421 hybrid contribution 0.545 -0.716 0.715 1.149 sum -13.200 -17.553 -4.788 22.478 Atomic orbital electron populations 1.20325 0.80267 1.05706 1.05026 1.27965 0.97762 0.79712 0.99919 1.74428 0.96078 1.25617 1.17206 1.74466 1.11997 1.08922 1.15840 1.26888 0.84523 0.91343 0.99867 1.20114 0.90299 1.00474 0.97938 1.19909 0.81317 0.78259 0.89883 1.90764 1.53828 1.50752 1.45877 1.45595 1.26782 1.53435 1.09106 1.20984 0.93031 0.98715 0.83068 0.89423 1.22146 1.01072 0.97624 1.01160 1.22492 0.92564 0.94803 0.98794 1.61568 1.16897 1.04370 1.41110 1.22558 0.88788 1.01833 0.99328 1.21937 1.01473 0.91459 0.93911 1.19655 0.85032 0.84076 0.88194 1.90461 1.55250 1.83810 1.16856 1.41867 1.56132 1.08492 1.13427 1.19676 1.38137 0.87724 0.97204 0.87922 1.25259 0.97749 0.99060 0.95856 1.69613 1.48188 1.26326 1.10125 0.85868 0.78979 0.80561 0.78941 1.20308 1.20988 1.19447 1.84714 1.17456 1.38379 1.69820 0.88431 0.88995 0.87532 0.85627 0.83622 0.75884 0.92379 0.91556 0.91888 0.93202 0.90207 0.92328 0.88352 0.96688 0.89562 0.93456 0.77552 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.16 1.96 8.48 -12.94 -0.11 1.85 16 3 N -0.29 -4.69 12.22 32.55 0.40 -4.29 16 4 N -0.27 -4.73 12.22 32.55 0.40 -4.33 16 5 C 0.19 2.68 6.97 -12.94 -0.09 2.59 16 6 C -0.05 -0.50 6.33 -29.04 -0.18 -0.68 16 7 C 0.52 7.06 7.76 -10.99 -0.09 6.97 16 8 O -0.54 -9.64 15.72 5.55 0.09 -9.56 16 9 N -0.70 -7.80 4.83 -53.81 -0.26 -8.06 16 10 C 0.15 1.68 2.55 -67.93 -0.17 1.50 16 11 H 0.09 1.26 6.41 -51.93 -0.33 0.93 16 12 C -0.16 -1.47 9.46 37.16 0.35 -1.12 16 13 C 0.04 0.46 4.54 -3.82 -0.02 0.44 16 14 N -0.52 -7.67 4.16 -244.37 -1.02 -8.69 16 15 C 0.02 0.33 9.17 60.06 0.55 0.88 16 16 C 0.04 0.77 5.28 -4.97 -0.03 0.75 16 17 C 0.45 10.51 7.52 -10.99 -0.08 10.43 16 18 O -0.58 -15.22 13.88 5.54 0.08 -15.15 16 19 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 20 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -25.27 13.05 55.50 0.72 -24.55 16 24 Si 0.93 21.66 29.55 -169.99 -5.02 16.64 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 O -0.22 -2.95 10.87 5.41 0.06 -2.89 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.15 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.41 3.63 8.58 -40.82 -0.35 3.27 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.05 0.51 8.01 -51.93 -0.42 0.09 16 39 H 0.08 0.69 7.81 -51.93 -0.41 0.28 16 40 H 0.06 0.68 7.94 -51.93 -0.41 0.27 16 41 H 0.10 1.81 5.92 -51.93 -0.31 1.50 16 42 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 43 H 0.09 1.51 6.66 -51.93 -0.35 1.17 16 44 H 0.05 0.77 8.11 -51.92 -0.42 0.35 16 45 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 46 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -38.38 392.93 -5.05 -43.43 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.63 Total: 10.65 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 0.27 Total: 15.54 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.19 Total: -64.59 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: 0.22 Total: -27.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.38 -5.05 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733038606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.823 kcal (2) G-P(sol) polarization free energy of solvation -38.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds