Wall clock time and date at job start Tue Mar 31 2020 22:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30274 * 126.27911 * 2 1 4 4 N 1.28673 * 109.38255 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37506 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.27739 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47736 * 89.97116 * 6 5 4 8 8 O 1.21288 * 119.99590 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00184 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99890 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47566 * 322.99116 * 10 9 7 12 12 C 1.53006 * 109.46959 * 82.98911 * 10 9 7 13 13 C 1.52995 * 109.47528 * 202.98793 * 10 9 7 14 14 N 1.46905 * 109.46843 * 55.16312 * 13 10 9 15 15 C 1.46896 * 111.00092 * 198.92937 * 14 13 10 16 16 C 1.46903 * 110.99827 * 74.97575 * 14 13 10 17 17 C 1.50701 * 109.46951 * 189.99899 * 16 14 13 18 18 O 1.21295 * 119.99910 * 359.97438 * 17 16 14 19 19 N 1.34775 * 119.99570 * 180.02562 * 17 16 14 20 20 C 1.37101 * 119.99736 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99646 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00143 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00073 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00333 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47360 * 89.99567 * 24 22 20 26 26 H 1.48500 * 109.47683 * 209.99863 * 24 22 20 27 27 H 1.48500 * 109.47065 * 330.00109 * 24 22 20 28 28 O 1.34355 * 126.28576 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46980 * 90.02779 * 1 2 3 30 30 H 1.09001 * 109.46921 * 210.01810 * 1 2 3 31 31 H 1.08994 * 109.47547 * 330.02641 * 1 2 3 32 32 H 1.09005 * 109.47237 * 209.97191 * 6 5 4 33 33 H 1.09002 * 109.47170 * 329.96222 * 6 5 4 34 34 H 0.96993 * 120.00116 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47090 * 60.00071 * 12 10 9 36 36 H 1.09004 * 109.47091 * 179.97438 * 12 10 9 37 37 H 1.08996 * 109.47287 * 299.99558 * 12 10 9 38 38 H 1.09000 * 109.47455 * 175.16483 * 13 10 9 39 39 H 1.08997 * 109.47171 * 295.16722 * 13 10 9 40 40 H 1.09006 * 109.47214 * 54.11891 * 15 14 13 41 41 H 1.08996 * 109.47721 * 174.12163 * 15 14 13 42 42 H 1.09005 * 109.47310 * 294.12581 * 15 14 13 43 43 H 1.08996 * 109.47095 * 309.99924 * 16 14 13 44 44 H 1.09008 * 109.46627 * 69.99980 * 16 14 13 45 45 H 0.97000 * 120.00250 * 0.02562 * 19 17 16 46 46 H 0.97003 * 120.00368 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6762 0.0005 5 6 3.5654 -0.6253 0.0004 6 6 4.8177 -1.4636 0.0014 7 6 5.2343 -1.7428 1.4225 8 8 4.5790 -1.3038 2.3438 9 7 6.3356 -2.4794 1.6695 10 6 6.7408 -2.7503 3.0510 11 1 6.5421 -1.8731 3.6667 12 6 5.9478 -3.9424 3.5907 13 6 8.2359 -3.0727 3.0901 14 7 8.9895 -1.9770 2.4660 15 6 10.3357 -2.4183 2.0774 16 6 9.0545 -0.8094 3.3552 17 6 9.6133 0.3679 2.5984 18 8 9.9271 0.2461 1.4330 19 7 9.7654 1.5557 3.2168 20 6 10.2743 2.6266 2.5284 21 1 10.5529 2.5184 1.4905 22 6 10.4316 3.8511 3.1660 23 7 10.0932 3.9826 4.4289 24 14 11.1243 5.3104 2.2280 25 1 10.0128 6.0641 1.5940 26 1 11.8543 6.2006 3.1660 27 1 12.0564 4.8267 1.1780 28 8 2.3021 -1.0830 0.0005 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3634 0.8901 0.5134 32 1 4.6249 -2.4055 -0.5124 33 1 5.6150 -0.9263 -0.5122 34 1 6.8598 -2.8302 0.9327 35 1 6.1466 -4.8196 2.9751 36 1 6.2497 -4.1442 4.6185 37 1 4.8827 -3.7127 3.5630 38 1 8.5555 -3.1898 4.1256 39 1 8.4224 -3.9982 2.5455 40 1 10.2597 -3.3044 1.4471 41 1 10.8342 -1.6215 1.5255 42 1 10.9121 -2.6568 2.9713 43 1 8.0535 -0.5692 3.7132 44 1 9.6998 -1.0350 4.2044 45 1 9.5156 1.6527 4.1490 46 1 10.2027 4.8375 4.8740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733038606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:06 Heat of formation + Delta-G solvation = -60.561098 kcal Electronic energy + Delta-G solvation = -29697.040845 eV Core-core repulsion = 25429.797684 eV Total energy + Delta-G solvation = -4267.243161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.31278 -41.02421 -40.27652 -38.31550 -37.27637 -36.15736 -35.55702 -34.67888 -33.27544 -32.70866 -31.15287 -29.58253 -28.25891 -27.94188 -26.60663 -24.51287 -23.73452 -23.48275 -22.17103 -21.55174 -20.86068 -19.85429 -18.96492 -18.28669 -18.01128 -17.66938 -17.39829 -16.69569 -16.63482 -16.32908 -16.08737 -15.80090 -15.49526 -15.40590 -15.21351 -15.01342 -14.74994 -14.15755 -13.98008 -13.75489 -13.68482 -13.55356 -13.50243 -13.40554 -13.20324 -13.07184 -12.96122 -12.88864 -12.83029 -12.61741 -12.45671 -12.36904 -12.12752 -12.01292 -11.70888 -11.44034 -11.21024 -10.55224 -10.26238 -10.05337 -9.99812 -9.19806 -8.46781 -5.95291 0.05313 1.14038 1.27711 1.36633 1.39747 1.52430 1.53919 2.05923 2.21398 2.28340 2.77639 2.81430 3.20349 3.37705 3.39539 3.67089 3.81584 3.85725 4.08923 4.13961 4.20055 4.32945 4.34574 4.40709 4.42635 4.52102 4.54647 4.55701 4.59925 4.69113 4.70264 4.73944 4.80453 4.84554 5.02766 5.07415 5.27386 5.31388 5.40390 5.53048 5.87558 6.06904 6.23371 6.54361 6.59768 7.12806 7.20811 7.22425 7.56649 8.11687 8.71034 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008318 B = 0.003303 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.306808 B = 8474.826769 C =11016.900083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.171 3.829 3 N -0.337 5.337 4 N -0.322 5.322 5 C 0.185 3.815 6 C -0.043 4.043 7 C 0.517 3.483 8 O -0.589 6.589 9 N -0.685 5.685 10 C 0.144 3.856 11 H 0.051 0.949 12 C -0.150 4.150 13 C 0.049 3.951 14 N -0.528 5.528 15 C 0.027 3.973 16 C 0.058 3.942 17 C 0.444 3.556 18 O -0.607 6.607 19 N -0.579 5.579 20 C -0.329 4.329 21 H 0.081 0.919 22 C -0.017 4.017 23 N -0.924 5.924 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.268 1.268 28 O -0.224 6.224 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.178 0.822 33 H 0.153 0.847 34 H 0.420 0.580 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.026 0.974 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.392 0.608 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.085 -21.291 -5.549 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.040 4.040 3 N -0.183 5.183 4 N -0.167 5.167 5 C -0.028 4.028 6 C -0.083 4.083 7 C 0.302 3.698 8 O -0.470 6.470 9 N -0.337 5.337 10 C 0.039 3.961 11 H 0.069 0.931 12 C -0.209 4.209 13 C -0.079 4.079 14 N -0.252 5.252 15 C -0.120 4.120 16 C -0.074 4.074 17 C 0.231 3.769 18 O -0.493 6.493 19 N -0.217 5.217 20 C -0.458 4.458 21 H 0.099 0.901 22 C -0.216 4.216 23 N -0.565 5.565 24 Si 0.816 3.184 25 H -0.201 1.201 26 H -0.194 1.194 27 H -0.193 1.193 28 O -0.104 6.104 29 H 0.144 0.856 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.195 0.805 33 H 0.171 0.829 34 H 0.257 0.743 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.134 0.866 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.226 0.774 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.160 -19.530 -5.969 24.851 hybrid contribution 0.621 -0.008 0.841 1.046 sum -13.539 -19.538 -5.127 24.317 Atomic orbital electron populations 1.20743 0.76025 1.07226 1.07269 1.29159 0.99571 0.78710 0.96607 1.74312 0.96286 1.27591 1.20127 1.74347 1.13264 1.11001 1.18134 1.27481 0.85830 0.90980 0.98506 1.20349 0.88958 1.02437 0.96575 1.20373 0.81300 0.77693 0.90435 1.90742 1.55644 1.52980 1.47654 1.45567 1.25981 1.52389 1.09717 1.21023 0.94093 0.98345 0.82632 0.93115 1.22043 0.99228 0.97233 1.02386 1.22580 0.90919 0.94326 1.00034 1.61492 1.17658 1.04853 1.41215 1.22457 0.88271 1.01431 0.99865 1.21728 1.01226 0.90435 0.93990 1.20729 0.83254 0.84780 0.88147 1.90441 1.55908 1.84502 1.18412 1.41987 1.57136 1.09039 1.13496 1.19657 1.39974 0.89417 0.96793 0.90087 1.26064 0.97647 1.01144 0.96753 1.69684 1.48602 1.27175 1.11089 0.84937 0.78322 0.77250 0.77905 1.20110 1.19448 1.19265 1.84738 1.17194 1.38486 1.69973 0.85569 0.86613 0.86722 0.80465 0.82918 0.74276 0.89761 0.90254 0.93961 0.91703 0.86596 0.88803 0.92836 0.95568 0.89446 0.91537 0.77448 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.51 71.24 0.75 0.16 16 2 C 0.17 4.22 8.48 88.34 0.75 4.97 16 3 N -0.34 -11.50 12.22 -165.51 -2.02 -13.53 16 4 N -0.32 -11.99 12.22 -165.51 -2.02 -14.01 16 5 C 0.18 5.39 6.97 88.34 0.62 6.01 16 6 C -0.04 -0.87 6.33 29.10 0.18 -0.68 16 7 C 0.52 13.77 7.76 87.66 0.68 14.45 16 8 O -0.59 -21.90 15.72 -3.05 -0.05 -21.95 16 9 N -0.69 -14.17 4.83 -442.54 -2.14 -16.30 16 10 C 0.14 3.03 2.55 44.99 0.11 3.14 16 11 H 0.05 1.47 6.41 -2.39 -0.02 1.45 16 12 C -0.15 -2.36 9.46 71.98 0.68 -1.68 16 13 C 0.05 0.89 4.54 86.30 0.39 1.28 16 14 N -0.53 -14.68 4.16 -927.04 -3.86 -18.53 16 15 C 0.03 0.73 9.17 127.69 1.17 1.90 16 16 C 0.06 2.02 5.28 85.56 0.45 2.47 16 17 C 0.44 21.46 7.52 87.66 0.66 22.12 16 18 O -0.61 -32.82 13.88 -3.08 -0.04 -32.86 16 19 N -0.58 -31.11 5.29 -306.98 -1.62 -32.73 16 20 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 21 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 22 C -0.02 -0.94 5.50 84.92 0.47 -0.48 16 23 N -0.92 -52.51 13.05 21.66 0.28 -52.23 16 24 Si 0.99 44.95 29.55 68.60 2.03 46.98 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 O -0.22 -5.79 10.87 -3.54 -0.04 -5.83 16 29 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.18 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.42 6.30 8.58 -92.71 -0.80 5.50 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.04 0.86 8.13 -2.39 -0.02 0.84 16 38 H 0.06 1.06 8.01 -2.39 -0.02 1.04 16 39 H 0.12 1.36 7.81 -2.39 -0.02 1.34 16 40 H 0.09 1.83 7.94 -2.38 -0.02 1.81 16 41 H 0.05 1.95 5.92 -2.39 -0.01 1.94 16 42 H 0.03 0.64 8.13 -2.38 -0.02 0.62 16 43 H 0.09 3.09 6.66 -2.39 -0.02 3.07 16 44 H 0.07 2.09 8.11 -2.38 -0.02 2.07 16 45 H 0.39 20.47 7.90 -92.71 -0.73 19.74 16 46 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -90.14 392.93 -2.25 -92.39 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.49 Total: 33.47 kcal Atomic # 6 Polarization: 27.41 SS G_CDS: 7.73 Total: 35.14 kcal Atomic # 7 Polarization: -135.96 SS G_CDS: -11.38 Total: -147.34 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -0.13 Total: -60.63 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -90.14 -2.25 -92.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733038606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.825 kcal (2) G-P(sol) polarization free energy of solvation -90.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds