Wall clock time and date at job start Tue Mar 31 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30280 * 126.28154 * 2 1 4 4 N 1.28670 * 109.38026 * 180.02562 * 3 2 1 5 5 C 1.30280 * 109.38016 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.27892 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47166 * 90.02119 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99635 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 12 12 C 1.53000 * 109.47637 * 90.00039 * 11 9 7 13 13 C 1.52994 * 109.47472 * 179.97438 * 12 11 9 14 14 N 1.46903 * 109.47180 * 179.97438 * 13 12 11 15 15 C 1.46898 * 110.99777 * 180.02562 * 14 13 12 16 16 C 1.50709 * 109.47017 * 180.02562 * 15 14 13 17 17 O 1.21295 * 119.99581 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99819 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99603 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99778 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00008 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99888 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00034 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46679 * 90.00270 * 23 21 19 25 25 H 1.48501 * 109.46909 * 210.00114 * 23 21 19 26 26 H 1.48498 * 109.47148 * 330.00395 * 23 21 19 27 27 O 1.34360 * 126.28435 * 180.29342 * 2 1 3 28 28 H 1.09000 * 109.47676 * 89.97331 * 1 2 3 29 29 H 1.09002 * 109.46912 * 209.97496 * 1 2 3 30 30 H 1.09005 * 109.47256 * 329.96799 * 1 2 3 31 31 H 1.08998 * 109.46890 * 330.02109 * 6 5 4 32 32 H 1.09002 * 109.46875 * 210.01911 * 6 5 4 33 33 H 1.08995 * 109.47693 * 90.00207 * 10 9 7 34 34 H 1.09003 * 109.47006 * 210.00121 * 10 9 7 35 35 H 1.09004 * 109.47665 * 329.99813 * 10 9 7 36 36 H 1.09002 * 109.47192 * 209.99937 * 11 9 7 37 37 H 1.08996 * 109.47342 * 329.99648 * 11 9 7 38 38 H 1.09002 * 109.46747 * 300.00171 * 12 11 9 39 39 H 1.08996 * 109.47074 * 59.99445 * 12 11 9 40 40 H 1.08993 * 109.47409 * 300.00238 * 13 12 11 41 41 H 1.09008 * 109.47165 * 60.00188 * 13 12 11 42 42 H 1.00898 * 110.99856 * 56.04817 * 14 13 12 43 43 H 1.09004 * 109.46908 * 299.99624 * 15 14 13 44 44 H 1.08993 * 109.47715 * 60.00049 * 15 14 13 45 45 H 0.96995 * 120.00577 * 0.02562 * 18 16 15 46 46 H 0.96999 * 120.00354 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8177 -1.4638 -0.0029 7 6 5.2357 -1.7446 1.4174 8 8 4.5816 -1.3067 2.3401 9 7 6.3368 -2.4824 1.6624 10 6 7.1272 -3.0109 0.5480 11 6 6.7465 -2.7504 3.0431 12 6 6.0853 -4.0414 3.5301 13 6 6.5138 -4.3215 4.9718 14 7 5.8783 -5.5607 5.4395 15 6 6.2673 -5.8617 6.8237 16 6 5.5981 -7.1371 7.2675 17 8 4.8685 -7.7359 6.5057 18 7 5.8103 -7.6121 8.5108 19 6 5.2011 -8.7720 8.9146 20 1 4.5508 -9.3048 8.2366 21 6 5.4202 -9.2621 10.1962 22 7 6.2111 -8.6136 11.0214 23 14 4.5896 -10.8421 10.7467 24 1 5.4628 -11.9989 10.4234 25 1 4.3550 -10.7933 12.2123 26 1 3.2908 -10.9900 10.0421 27 8 2.3021 -1.0830 -0.0055 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5143 31 1 5.6144 -0.9258 -0.5165 32 1 4.6242 -2.4050 -0.5175 33 1 7.8953 -2.2883 0.2724 34 1 7.5995 -3.9461 0.8489 35 1 6.4751 -3.1917 -0.3065 36 1 7.8303 -2.8589 3.0860 37 1 6.4389 -1.9217 3.6808 38 1 5.0015 -3.9329 3.4873 39 1 6.3929 -4.8701 2.8924 40 1 7.5974 -4.4301 5.0143 41 1 6.2064 -3.4928 5.6098 42 1 6.0957 -6.3321 4.8266 43 1 7.3493 -5.9813 6.8792 44 1 5.9583 -5.0436 7.4742 45 1 6.3934 -7.1330 9.1201 46 1 6.3638 -8.9554 11.9162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733098047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:05 Heat of formation + Delta-G solvation = -30.019980 kcal Electronic energy + Delta-G solvation = -27885.341037 eV Core-core repulsion = 23619.422239 eV Total energy + Delta-G solvation = -4265.918799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.54939 -40.39181 -38.30487 -36.74633 -36.47872 -35.52983 -34.10590 -33.85731 -32.28887 -31.24667 -30.93083 -28.01639 -27.62934 -26.61102 -24.94720 -23.65943 -23.06477 -22.68657 -21.59566 -19.81367 -19.20349 -18.16932 -17.87607 -17.55090 -17.17077 -16.77690 -16.17768 -16.05164 -15.69200 -15.20313 -14.90068 -14.65258 -14.40868 -14.29507 -13.99316 -13.85979 -13.61671 -13.50845 -13.38673 -13.22460 -13.05336 -12.90783 -12.68852 -12.53364 -12.17010 -12.09704 -11.89093 -11.72576 -11.48204 -11.38680 -11.29948 -11.04808 -10.79966 -10.44755 -10.39036 -10.21379 -9.78924 -9.50503 -9.15080 -8.45491 -8.04704 -7.95170 -6.41137 -3.81994 0.76147 1.79280 2.01918 2.10591 2.55236 3.18064 3.26615 3.32915 3.35298 3.89285 3.91690 3.93445 4.10639 4.27631 4.33422 4.49464 4.57603 4.74294 4.81036 4.81872 4.86180 4.97025 5.04289 5.10539 5.11905 5.14562 5.19898 5.22760 5.24900 5.36051 5.42366 5.43786 5.63933 5.78898 5.93264 6.00127 6.03292 6.21851 6.29047 6.81643 7.23005 7.55698 7.63981 7.67519 7.96464 8.07051 8.62030 9.18416 9.55029 10.06596 10.76625 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.001604 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.023074 B =17449.757950 C =18568.833002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.168 3.832 3 N -0.289 5.289 4 N -0.273 5.273 5 C 0.180 3.820 6 C -0.044 4.044 7 C 0.517 3.483 8 O -0.520 6.520 9 N -0.612 5.612 10 C 0.071 3.929 11 C 0.117 3.883 12 C -0.132 4.132 13 C 0.063 3.937 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 O -0.219 6.219 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.348 0.652 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 15.985 -25.306 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.042 4.042 3 N -0.137 5.137 4 N -0.120 5.120 5 C -0.032 4.032 6 C -0.085 4.085 7 C 0.303 3.697 8 O -0.395 6.395 9 N -0.345 5.345 10 C -0.072 4.072 11 C -0.005 4.005 12 C -0.171 4.171 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 O -0.098 6.098 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.226 0.774 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.188 17.310 -24.935 30.355 hybrid contribution 0.706 -2.087 0.647 2.296 sum 0.518 15.224 -24.288 28.669 Atomic orbital electron populations 1.20396 0.80011 1.06074 1.05242 1.28036 0.97882 0.79449 0.98871 1.74394 0.95914 1.25563 1.17831 1.74345 1.12482 1.08862 1.16277 1.26811 0.84761 0.91299 1.00317 1.20138 0.90184 1.00528 0.97691 1.20038 0.80914 0.78617 0.90141 1.90811 1.52468 1.50489 1.45762 1.47754 1.26561 1.52297 1.07929 1.21941 0.96094 1.00109 0.89068 1.21523 0.99184 0.98659 0.81163 1.21888 1.02509 0.96698 0.95962 1.21851 0.95705 0.93950 0.95217 1.60020 1.61989 1.05507 1.02664 1.21671 0.97454 0.98150 0.90888 1.19824 0.86505 0.87420 0.83639 1.90519 1.41268 1.61042 1.53970 1.41864 1.43111 1.23417 1.11668 1.19711 1.25275 1.00032 0.97898 0.87928 1.25267 0.97265 0.99657 0.95795 1.69613 1.37089 1.39914 1.07706 0.85848 0.79612 0.81139 0.77629 1.20440 1.20911 1.19410 1.84757 1.17307 1.38354 1.69410 0.88213 0.88618 0.87369 0.84120 0.85313 0.91873 0.90178 0.90826 0.90096 0.89427 0.90448 0.91817 0.95502 0.90907 0.83292 0.93893 0.89570 0.77443 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.00 0.38 0.10 16 2 C 0.17 1.69 8.48 -12.94 -0.11 1.58 16 3 N -0.29 -3.71 12.22 32.55 0.40 -3.32 16 4 N -0.27 -3.59 12.22 32.55 0.40 -3.19 16 5 C 0.18 1.94 6.97 -12.94 -0.09 1.85 16 6 C -0.04 -0.29 4.88 -29.04 -0.14 -0.43 16 7 C 0.52 5.10 7.67 -10.98 -0.08 5.02 16 8 O -0.52 -7.81 15.62 5.56 0.09 -7.73 16 9 N -0.61 -4.55 2.87 -181.58 -0.52 -5.07 16 10 C 0.07 0.22 10.24 59.84 0.61 0.84 16 11 C 0.12 1.00 5.41 -4.05 -0.02 0.98 16 12 C -0.13 -1.40 5.80 -26.73 -0.16 -1.55 16 13 C 0.06 0.77 5.69 -3.83 -0.02 0.75 16 14 N -0.67 -11.13 6.13 -115.06 -0.70 -11.83 16 15 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 16 C 0.44 10.64 7.82 -10.98 -0.09 10.55 16 17 O -0.58 -16.19 15.78 5.54 0.09 -16.10 16 18 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 19 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 O -0.22 -2.40 10.87 5.40 0.06 -2.34 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.14 0.48 8.11 -51.93 -0.42 0.06 16 32 H 0.13 0.40 7.40 -51.93 -0.38 0.02 16 33 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 35 H 0.07 0.09 6.44 -51.93 -0.33 -0.25 16 36 H 0.08 0.50 8.07 -51.93 -0.42 0.09 16 37 H 0.09 0.91 7.42 -51.93 -0.39 0.52 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 42 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 45 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 46 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -39.41 398.46 -5.30 -44.70 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.76 Total: 8.82 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 0.01 Total: 12.45 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 0.24 Total: -62.01 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.23 Total: -26.16 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.41 -5.30 -44.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733098047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.683 kcal (2) G-P(sol) polarization free energy of solvation -39.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds