Wall clock time and date at job start Tue Mar 31 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30280 * 126.28154 * 2 1 4 4 N 1.28670 * 109.38026 * 180.02562 * 3 2 1 5 5 C 1.30280 * 109.38016 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.27892 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47166 * 90.02119 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99635 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 12 12 C 1.53000 * 109.47637 * 90.00039 * 11 9 7 13 13 C 1.52994 * 109.47472 * 179.97438 * 12 11 9 14 14 N 1.46903 * 109.47180 * 179.97438 * 13 12 11 15 15 C 1.46898 * 110.99777 * 180.02562 * 14 13 12 16 16 C 1.50709 * 109.47017 * 180.02562 * 15 14 13 17 17 O 1.21295 * 119.99581 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99819 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99603 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99778 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00008 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99888 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00034 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46679 * 90.00270 * 23 21 19 25 25 H 1.48501 * 109.46909 * 210.00114 * 23 21 19 26 26 H 1.48498 * 109.47148 * 330.00395 * 23 21 19 27 27 O 1.34360 * 126.28435 * 180.29342 * 2 1 3 28 28 H 1.09000 * 109.47676 * 89.97331 * 1 2 3 29 29 H 1.09002 * 109.46912 * 209.97496 * 1 2 3 30 30 H 1.09005 * 109.47256 * 329.96799 * 1 2 3 31 31 H 1.08998 * 109.46890 * 330.02109 * 6 5 4 32 32 H 1.09002 * 109.46875 * 210.01911 * 6 5 4 33 33 H 1.08995 * 109.47693 * 90.00207 * 10 9 7 34 34 H 1.09003 * 109.47006 * 210.00121 * 10 9 7 35 35 H 1.09004 * 109.47665 * 329.99813 * 10 9 7 36 36 H 1.09002 * 109.47192 * 209.99937 * 11 9 7 37 37 H 1.08996 * 109.47342 * 329.99648 * 11 9 7 38 38 H 1.09002 * 109.46747 * 300.00171 * 12 11 9 39 39 H 1.08996 * 109.47074 * 59.99445 * 12 11 9 40 40 H 1.08993 * 109.47409 * 300.00238 * 13 12 11 41 41 H 1.09008 * 109.47165 * 60.00188 * 13 12 11 42 42 H 1.00898 * 110.99856 * 56.04817 * 14 13 12 43 43 H 1.09004 * 109.46908 * 299.99624 * 15 14 13 44 44 H 1.08993 * 109.47715 * 60.00049 * 15 14 13 45 45 H 0.96995 * 120.00577 * 0.02562 * 18 16 15 46 46 H 0.96999 * 120.00354 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8177 -1.4638 -0.0029 7 6 5.2357 -1.7446 1.4174 8 8 4.5816 -1.3067 2.3401 9 7 6.3368 -2.4824 1.6624 10 6 7.1272 -3.0109 0.5480 11 6 6.7465 -2.7504 3.0431 12 6 6.0853 -4.0414 3.5301 13 6 6.5138 -4.3215 4.9718 14 7 5.8783 -5.5607 5.4395 15 6 6.2673 -5.8617 6.8237 16 6 5.5981 -7.1371 7.2675 17 8 4.8685 -7.7359 6.5057 18 7 5.8103 -7.6121 8.5108 19 6 5.2011 -8.7720 8.9146 20 1 4.5508 -9.3048 8.2366 21 6 5.4202 -9.2621 10.1962 22 7 6.2111 -8.6136 11.0214 23 14 4.5896 -10.8421 10.7467 24 1 5.4628 -11.9989 10.4234 25 1 4.3550 -10.7933 12.2123 26 1 3.2908 -10.9900 10.0421 27 8 2.3021 -1.0830 -0.0055 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5143 31 1 5.6144 -0.9258 -0.5165 32 1 4.6242 -2.4050 -0.5175 33 1 7.8953 -2.2883 0.2724 34 1 7.5995 -3.9461 0.8489 35 1 6.4751 -3.1917 -0.3065 36 1 7.8303 -2.8589 3.0860 37 1 6.4389 -1.9217 3.6808 38 1 5.0015 -3.9329 3.4873 39 1 6.3929 -4.8701 2.8924 40 1 7.5974 -4.4301 5.0143 41 1 6.2064 -3.4928 5.6098 42 1 6.0957 -6.3321 4.8266 43 1 7.3493 -5.9813 6.8792 44 1 5.9583 -5.0436 7.4742 45 1 6.3934 -7.1330 9.1201 46 1 6.3638 -8.9554 11.9162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733098047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:05 Heat of formation + Delta-G solvation = -65.941037 kcal Electronic energy + Delta-G solvation = -27886.898691 eV Core-core repulsion = 23619.422239 eV Total energy + Delta-G solvation = -4267.476452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.32927 -41.09775 -40.17704 -37.73064 -37.29509 -36.57460 -35.87364 -34.75914 -33.37844 -33.05011 -31.64988 -29.00691 -28.29180 -27.56476 -26.39646 -24.92005 -23.88573 -23.49102 -22.53496 -21.10395 -20.43969 -19.91936 -18.87133 -18.29495 -17.94333 -17.87031 -17.33505 -17.02850 -16.81885 -16.51290 -15.99104 -15.84178 -15.66391 -15.53645 -15.12922 -14.91587 -14.64403 -14.17776 -14.14921 -13.99468 -13.61796 -13.56423 -13.53408 -13.46990 -13.35339 -13.21015 -13.01415 -12.95361 -12.82188 -12.71173 -12.46602 -12.42665 -12.13052 -12.06757 -11.69258 -11.52272 -11.23809 -10.54666 -10.38447 -10.03691 -9.76042 -9.33631 -8.48207 -5.97394 0.02548 1.13280 1.24983 1.37143 1.40922 1.41675 1.54094 1.96059 2.02612 2.28339 2.74545 2.92373 3.18776 3.32227 3.39089 3.52463 3.76548 3.96926 4.04763 4.10738 4.24366 4.29927 4.31592 4.34796 4.39411 4.44873 4.49706 4.53757 4.54505 4.57168 4.63374 4.67974 4.73108 4.83314 5.01335 5.03526 5.14497 5.18551 5.39264 5.49102 5.87529 6.09109 6.23800 6.41215 6.58107 6.98062 7.10483 7.16366 7.53770 8.09020 8.69129 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.001604 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.023074 B =17449.757950 C =18568.833002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.171 3.829 3 N -0.331 5.331 4 N -0.310 5.310 5 C 0.177 3.823 6 C -0.038 4.038 7 C 0.510 3.490 8 O -0.586 6.586 9 N -0.605 5.605 10 C 0.060 3.940 11 C 0.120 3.880 12 C -0.119 4.119 13 C 0.065 3.935 14 N -0.690 5.690 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.995 3.005 24 H -0.269 1.269 25 H -0.270 1.270 26 H -0.274 1.274 27 O -0.230 6.230 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.175 0.825 32 H 0.168 0.832 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.346 0.654 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 15.350 -26.577 30.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 N -0.177 5.177 4 N -0.156 5.156 5 C -0.035 4.035 6 C -0.078 4.078 7 C 0.297 3.703 8 O -0.466 6.466 9 N -0.337 5.337 10 C -0.081 4.081 11 C -0.003 4.003 12 C -0.158 4.158 13 C -0.064 4.064 14 N -0.323 5.323 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.511 6.511 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.818 3.182 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.199 1.199 27 O -0.110 6.110 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.192 0.808 32 H 0.185 0.815 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.165 0.835 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.135 16.702 -26.231 31.118 hybrid contribution 0.328 -1.888 1.009 2.165 sum 1.463 14.815 -25.222 29.288 Atomic orbital electron populations 1.20735 0.76619 1.07086 1.07247 1.29048 0.99489 0.78720 0.96723 1.74300 0.96375 1.27053 1.20019 1.74236 1.13039 1.10347 1.17960 1.27615 0.85801 0.91238 0.98854 1.20449 0.89250 1.02187 0.95959 1.20637 0.80786 0.78040 0.90831 1.90784 1.54684 1.53296 1.47855 1.47874 1.26037 1.51168 1.08623 1.22320 0.96650 1.00876 0.88256 1.21440 1.00660 0.96464 0.81723 1.21753 1.00316 0.98331 0.95446 1.21912 0.97052 0.91606 0.95835 1.60005 1.63525 1.06856 1.01914 1.21524 0.98290 0.94875 0.91983 1.20903 0.85535 0.88650 0.82569 1.90484 1.42997 1.62763 1.54902 1.41933 1.43361 1.23153 1.12493 1.19683 1.26691 1.01640 0.98569 0.90338 1.26068 0.97448 1.02547 0.95233 1.69672 1.37294 1.41012 1.08052 0.84905 0.78355 0.77377 0.77550 1.19392 1.19515 1.19900 1.84778 1.17699 1.38788 1.69737 0.85510 0.87328 0.86483 0.80774 0.81478 0.89873 0.89300 0.88350 0.86813 0.91883 0.94101 0.90400 0.92653 0.91459 0.83550 0.91028 0.88287 0.76923 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 71.24 0.75 0.25 16 2 C 0.17 3.47 8.48 88.34 0.75 4.22 16 3 N -0.33 -8.81 12.22 -165.50 -2.02 -10.84 16 4 N -0.31 -8.40 12.22 -165.50 -2.02 -10.43 16 5 C 0.18 3.81 6.97 88.34 0.62 4.42 16 6 C -0.04 -0.42 4.88 29.10 0.14 -0.28 16 7 C 0.51 9.71 7.67 87.65 0.67 10.38 16 8 O -0.59 -18.42 15.62 -3.04 -0.05 -18.46 16 9 N -0.61 -7.81 2.87 -846.78 -2.43 -10.24 16 10 C 0.06 0.15 10.24 127.77 1.31 1.46 16 11 C 0.12 1.88 5.41 86.38 0.47 2.35 16 12 C -0.12 -2.42 5.80 30.59 0.18 -2.24 16 13 C 0.07 1.50 5.69 86.30 0.49 1.99 16 14 N -0.69 -22.41 6.13 -517.93 -3.17 -25.59 16 15 C 0.07 2.31 6.17 85.56 0.53 2.83 16 16 C 0.44 21.25 7.82 87.66 0.69 21.93 16 17 O -0.62 -35.48 15.78 -3.08 -0.05 -35.53 16 18 N -0.57 -29.89 5.29 -306.97 -1.62 -31.52 16 19 C -0.34 -19.39 9.68 84.04 0.81 -18.57 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 23 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 O -0.23 -5.04 10.87 -3.60 -0.04 -5.08 16 28 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.17 0.67 8.11 -2.39 -0.02 0.65 16 32 H 0.17 0.48 7.40 -2.39 -0.02 0.46 16 33 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.09 0.13 8.07 -2.39 -0.02 0.11 16 35 H 0.10 -0.22 6.44 -2.38 -0.02 -0.23 16 36 H 0.11 1.04 8.07 -2.39 -0.02 1.02 16 37 H 0.06 1.33 7.42 -2.39 -0.02 1.31 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.35 11.37 8.43 -89.70 -0.76 10.61 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 46 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -91.14 398.46 -1.70 -92.84 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.46 Total: 30.76 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: 7.86 Total: 28.50 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -10.99 Total: -138.27 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -0.14 Total: -59.07 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -91.14 -1.70 -92.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733098047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.897 kcal (2) G-P(sol) polarization free energy of solvation -91.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds