Wall clock time and date at job start Tue Mar 31 2020 22:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35359 * 127.24804 * 2 1 4 4 N 1.35037 * 107.22753 * 180.02562 * 3 2 1 5 5 C 1.46506 * 124.88281 * 179.97438 * 4 3 2 6 6 N 1.28466 * 110.23277 * 0.23418 * 4 3 2 7 7 C 1.31808 * 110.06878 * 359.61520 * 6 4 3 8 8 C 1.47714 * 126.51616 * 180.13029 * 7 6 4 9 9 O 1.21565 * 120.00232 * 180.28619 * 8 7 6 10 10 N 1.34774 * 119.99937 * 0.28767 * 8 7 6 11 11 C 1.46499 * 120.00041 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47459 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47177 * 64.99955 * 12 11 10 14 14 C 1.53000 * 109.47535 * 184.99804 * 12 11 10 15 15 O 1.42898 * 109.46898 * 55.00142 * 14 12 11 16 16 N 1.46898 * 109.47128 * 305.00183 * 12 11 10 17 17 C 1.46901 * 111.00306 * 154.99600 * 16 12 11 18 18 C 1.50698 * 109.47216 * 180.02562 * 17 16 12 19 19 O 1.21294 * 120.00241 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99856 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99894 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00203 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00055 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00069 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47222 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46882 * 120.00234 * 25 23 21 28 28 H 1.48496 * 109.47345 * 240.00432 * 25 23 21 29 29 H 1.08996 * 109.47117 * 90.02219 * 1 2 3 30 30 H 1.09004 * 109.46965 * 210.02416 * 1 2 3 31 31 H 1.08994 * 109.47206 * 330.01955 * 1 2 3 32 32 H 1.08005 * 126.38917 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46892 * 90.00651 * 5 4 3 34 34 H 1.09000 * 109.46803 * 209.99824 * 5 4 3 35 35 H 1.09000 * 109.47214 * 330.00618 * 5 4 3 36 36 H 0.97003 * 119.99924 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.47416 * 299.99661 * 11 10 8 38 38 H 1.09000 * 109.47595 * 59.99867 * 11 10 8 39 39 H 1.09000 * 109.47169 * 175.00051 * 14 12 11 40 40 H 1.08997 * 109.47427 * 295.00245 * 14 12 11 41 41 H 0.96701 * 114.00082 * 179.97438 * 15 14 12 42 42 H 1.00897 * 110.99856 * 278.95096 * 16 12 11 43 43 H 1.08997 * 109.47416 * 299.99864 * 17 16 12 44 44 H 1.09003 * 109.47145 * 59.99962 * 17 16 12 45 45 H 0.96997 * 119.99915 * 359.97438 * 20 18 17 46 46 H 0.96997 * 120.00218 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 -0.0006 5 6 4.7938 1.4575 -0.0013 6 7 3.5998 -0.6695 -0.0059 7 6 2.3635 -1.1264 -0.0007 8 6 1.9505 -2.5446 -0.0015 9 8 0.7698 -2.8339 -0.0015 10 7 2.8828 -3.5179 -0.0021 11 6 2.4733 -4.9245 -0.0022 12 6 3.7156 -5.8175 -0.0036 13 1 4.2649 -5.6772 0.9274 14 6 3.2910 -7.2820 -0.1294 15 8 2.4727 -7.4426 -1.2898 16 7 4.5760 -5.4578 -1.1386 17 6 5.9748 -5.8204 -0.8747 18 6 6.8252 -5.4365 -2.0581 19 8 6.3160 -4.9128 -3.0264 20 7 8.1514 -5.6761 -2.0409 21 6 8.9249 -5.3274 -3.1177 22 1 8.4717 -4.8603 -3.9796 23 6 10.2923 -5.5739 -3.0999 24 7 10.8439 -6.1417 -2.0510 25 14 11.3462 -5.0993 -4.5674 26 1 10.4907 -4.4809 -5.6119 27 1 12.3834 -4.1272 -4.1382 28 1 12.0022 -6.3121 -5.1185 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 2.0220 2.1138 -0.0004 33 1 5.0916 1.6665 1.0262 34 1 5.6024 0.9381 -0.5155 35 1 4.5791 2.3946 -0.5151 36 1 3.8249 -3.2871 -0.0024 37 1 1.8787 -5.1300 0.8880 38 1 1.8780 -5.1296 -0.8920 39 1 4.1769 -7.9106 -0.2197 40 1 2.7269 -7.5742 0.7562 41 1 2.1666 -8.3486 -1.4329 42 1 4.2465 -5.8845 -1.9915 43 1 6.3262 -5.2919 0.0114 44 1 6.0464 -6.8954 -0.7087 45 1 8.5585 -6.0953 -1.2667 46 1 11.7984 -6.3142 -2.0386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734366178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:46 Heat of formation + Delta-G solvation = -39.990057 kcal Electronic energy + Delta-G solvation = -29268.954104 eV Core-core repulsion = 25002.602970 eV Total energy + Delta-G solvation = -4266.351133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.68959 -39.36704 -38.46193 -37.57242 -35.38775 -34.10677 -33.94199 -33.57517 -31.95564 -31.22555 -30.04503 -28.31979 -26.98877 -26.15410 -25.37884 -23.90545 -22.43034 -20.90064 -20.65216 -19.78516 -19.29440 -17.98619 -17.67078 -17.47643 -16.41737 -16.37227 -16.29165 -15.53329 -15.43805 -15.03810 -14.70436 -14.39314 -14.28530 -13.97047 -13.77930 -13.70196 -13.58458 -13.37268 -13.10564 -13.05300 -12.69542 -12.53761 -12.30472 -12.12180 -12.01739 -11.77771 -11.57510 -11.45896 -11.22078 -11.06130 -10.77293 -10.34799 -10.22944 -10.13930 -9.85931 -9.51712 -9.29998 -8.87329 -8.67743 -8.46101 -8.05766 -7.95337 -6.41940 -3.82367 1.64353 2.05654 2.38935 3.15693 3.26204 3.33717 3.36467 3.58699 3.91571 3.97345 4.17195 4.27452 4.43628 4.63985 4.80116 4.82261 4.86300 4.98380 5.16330 5.17102 5.18579 5.23010 5.24495 5.28121 5.35638 5.49906 5.51312 5.75151 5.75966 5.80141 5.93539 5.97587 6.12210 6.13875 6.27652 6.45938 6.63759 6.71711 7.19113 7.49129 7.55501 7.67871 7.71597 7.97786 8.07037 8.44031 8.61865 9.18542 9.54803 10.06741 10.76010 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009207 B = 0.002931 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.569369 B = 9549.417304 C =12051.389980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.148 4.148 3 C -0.028 4.028 4 N -0.284 5.284 5 C 0.086 3.914 6 N -0.251 5.251 7 C -0.016 4.016 8 C 0.603 3.397 9 O -0.543 6.543 10 N -0.699 5.699 11 C 0.138 3.862 12 C 0.075 3.925 13 H 0.094 0.906 14 C 0.047 3.953 15 O -0.564 6.564 16 N -0.658 5.658 17 C 0.048 3.952 18 C 0.442 3.558 19 O -0.579 6.579 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.179 0.821 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.415 0.585 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.380 0.620 42 H 0.363 0.637 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.392 0.608 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.940 8.220 10.331 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.159 4.159 3 C -0.171 4.171 4 N -0.072 5.072 5 C -0.054 4.054 6 N -0.087 5.087 7 C -0.177 4.177 8 C 0.387 3.613 9 O -0.420 6.420 10 N -0.350 5.350 11 C 0.014 3.986 12 C -0.036 4.036 13 H 0.112 0.888 14 C -0.033 4.033 15 O -0.370 6.370 16 N -0.292 5.292 17 C -0.085 4.085 18 C 0.228 3.772 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.196 0.804 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.251 0.749 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.227 0.773 42 H 0.184 0.816 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.475 9.333 9.830 19.831 hybrid contribution 0.736 -1.189 -0.194 1.412 sum -13.740 8.144 9.636 18.654 Atomic orbital electron populations 1.20148 0.88204 1.02774 1.02297 1.20365 0.97392 0.90506 1.07593 1.22584 0.83796 1.00422 1.10266 1.45294 1.07066 1.03820 1.50981 1.22196 0.85022 0.93785 1.04403 1.73607 1.23180 0.93644 1.18303 1.21869 0.89441 0.95090 1.11256 1.16835 0.85349 0.82634 0.76455 1.90733 1.16969 1.82810 1.51464 1.45664 1.10621 1.05494 1.73200 1.21221 0.95537 0.79377 1.02508 1.21990 0.94304 0.91154 0.96194 0.88785 1.22842 0.94236 0.97909 0.88343 1.86503 1.70360 1.33926 1.46182 1.60112 1.00348 1.63820 1.04918 1.21753 0.89304 0.98572 0.98852 1.19785 0.83143 0.85248 0.89069 1.90548 1.72667 1.47297 1.35735 1.41862 1.05672 1.54208 1.18506 1.19747 0.89106 1.36908 0.96856 0.87916 1.25249 0.97211 0.97208 0.98335 1.69619 1.12597 1.43110 1.29148 0.85814 0.79514 0.78143 0.80971 1.19221 1.20777 1.20789 0.91563 0.89966 0.92269 0.80367 0.89736 0.88123 0.88716 0.74872 0.91529 0.90191 0.93028 0.93071 0.77343 0.81570 0.89627 0.93959 0.77536 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.93 36.01 0.36 -0.48 16 2 C -0.15 -1.91 6.25 -104.41 -0.65 -2.57 16 3 C -0.03 -0.29 11.40 -17.17 -0.20 -0.49 16 4 N -0.28 -3.22 3.70 -68.12 -0.25 -3.47 16 5 C 0.09 0.58 11.31 59.85 0.68 1.26 16 6 N -0.25 -3.71 11.67 33.42 0.39 -3.32 16 7 C -0.02 -0.25 7.13 -82.76 -0.59 -0.84 16 8 C 0.60 9.88 7.82 -12.39 -0.10 9.78 16 9 O -0.54 -9.77 15.12 5.31 0.08 -9.69 16 10 N -0.70 -10.51 5.39 -61.29 -0.33 -10.84 16 11 C 0.14 1.86 5.26 -4.04 -0.02 1.84 16 12 C 0.07 0.92 2.57 -67.71 -0.17 0.75 16 13 H 0.09 1.01 7.80 -51.93 -0.40 0.61 16 14 C 0.05 0.48 6.72 37.16 0.25 0.73 16 15 O -0.56 -6.30 12.05 -35.23 -0.42 -6.73 16 16 N -0.66 -10.63 5.32 -107.99 -0.57 -11.20 16 17 C 0.05 0.82 5.96 -4.98 -0.03 0.79 16 18 C 0.44 10.39 7.82 -10.99 -0.09 10.31 16 19 O -0.58 -15.89 15.78 5.55 0.09 -15.81 16 20 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.04 6.72 -51.93 -0.35 0.69 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.36 8.13 -51.93 -0.42 -0.06 16 36 H 0.41 6.42 7.87 -40.82 -0.32 6.10 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.24 7.39 -51.93 -0.38 0.86 16 39 H 0.05 0.52 7.35 -51.93 -0.38 0.14 16 40 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.38 2.55 9.12 45.56 0.42 2.96 16 42 H 0.36 6.58 7.64 -39.29 -0.30 6.28 16 43 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 44 H 0.04 0.65 7.36 -51.93 -0.38 0.26 16 45 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -36.69 393.29 -6.00 -42.69 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -5.74 Total: 21.32 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -0.80 Total: 13.13 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -0.10 Total: -66.89 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.26 Total: -32.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.69 -6.00 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734366178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.701 kcal (2) G-P(sol) polarization free energy of solvation -36.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds