Wall clock time and date at job start Tue Mar 31 2020 22:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21637 * 119.99787 * 359.97438 * 7 6 5 9 9 C 1.47247 * 120.00265 * 179.97438 * 7 6 5 10 10 C 1.36251 * 126.16542 * 179.97438 * 9 7 6 11 11 N 1.36342 * 106.88426 * 180.02562 * 10 9 7 12 12 C 1.46508 * 126.19757 * 180.02562 * 11 10 9 13 13 C 1.36163 * 107.60551 * 0.02562 * 11 10 9 14 14 O 1.35465 * 125.55320 * 179.97438 * 13 11 10 15 15 N 1.30706 * 108.89752 * 359.72635 * 13 11 10 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47045 * 89.99551 * 25 23 21 27 27 H 1.48502 * 109.47232 * 209.99530 * 25 23 21 28 28 H 1.48507 * 109.46899 * 329.99656 * 25 23 21 29 29 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 30 30 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 31 31 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.07996 * 126.55794 * 359.97438 * 10 9 7 38 38 H 1.09000 * 109.47164 * 89.99602 * 12 11 10 39 39 H 1.08993 * 109.46985 * 209.99970 * 12 11 10 40 40 H 1.09005 * 109.46766 * 330.00414 * 12 11 10 41 41 H 0.96696 * 113.99270 * 89.99944 * 14 13 11 42 42 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 43 43 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 44 44 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 45 45 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 46 46 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1687 2.1445 -0.2115 9 6 5.8860 4.4426 0.0671 10 6 7.1906 4.8326 0.0193 11 7 7.2047 6.1875 0.1712 12 6 8.3929 7.0444 0.1837 13 6 5.9143 6.5999 0.3090 14 8 5.5113 7.8815 0.4827 15 7 5.1275 5.5584 0.2413 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2586 1.7275 4.8691 21 6 1.8024 2.3168 6.0198 22 1 1.0704 3.1091 5.9672 23 6 2.2819 1.8948 7.2538 24 7 3.1723 0.9304 7.3178 25 14 1.6598 2.6973 8.8218 26 1 0.4660 1.9636 9.3133 27 1 2.7257 2.6571 9.8550 28 1 1.2933 4.1092 8.5434 29 1 -0.3633 0.5933 -0.8391 30 1 -0.3633 -1.0234 -0.0944 31 1 -0.3633 0.4300 0.9333 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 8.0493 4.1911 -0.1127 38 1 8.6155 7.3718 -0.8318 39 1 8.2068 7.9144 0.8134 40 1 9.2405 6.4844 0.5789 41 1 5.3325 8.3526 -0.3426 42 1 1.8236 3.0952 1.2081 43 1 3.3737 1.6315 2.3296 44 1 2.0702 0.4237 2.4306 45 1 2.9164 1.0162 4.9164 46 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753489121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:38 Heat of formation + Delta-G solvation = -42.887346 kcal Electronic energy + Delta-G solvation = -29569.313255 eV Core-core repulsion = 25302.836486 eV Total energy + Delta-G solvation = -4266.476769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45037 -39.67994 -38.41040 -37.59954 -37.09695 -34.57569 -33.92889 -33.70934 -31.87335 -31.09554 -29.57973 -28.70207 -27.48069 -26.35990 -24.31202 -23.87688 -22.47127 -21.69062 -20.44309 -20.02210 -19.03210 -18.80399 -17.82118 -17.78871 -16.75349 -16.64098 -16.07910 -15.78180 -15.37912 -15.12747 -14.79473 -14.66164 -14.39079 -14.24342 -14.01509 -13.83058 -13.61051 -13.37578 -13.27684 -13.21073 -12.84988 -12.53097 -12.25472 -12.07330 -11.82822 -11.56274 -11.37563 -11.20751 -10.97000 -10.78315 -10.60973 -10.47625 -10.33698 -10.13902 -10.13695 -10.08203 -9.42534 -9.11931 -8.74393 -8.39314 -7.97474 -7.87015 -6.33619 -3.74003 1.26995 1.84984 2.07485 3.05806 3.23280 3.31035 3.37434 3.38966 3.55043 4.01052 4.17710 4.25238 4.31594 4.42472 4.59489 4.74871 4.81798 4.90852 4.98100 5.13908 5.22140 5.29746 5.35419 5.45217 5.54164 5.60946 5.67150 5.87687 5.89079 5.96708 6.02143 6.09279 6.16361 6.17983 6.31965 6.40379 6.41630 6.62389 7.17942 7.25751 7.28647 7.59366 7.62776 7.68108 8.14842 8.21498 8.70437 9.26423 9.63767 10.15762 10.84300 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007503 B = 0.003418 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3730.772914 B = 8189.389780 C =10684.228704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.089 0.911 5 C 0.080 3.920 6 N -0.713 5.713 7 C 0.607 3.393 8 O -0.544 6.544 9 C -0.047 4.047 10 C 0.044 3.956 11 N -0.464 5.464 12 C 0.068 3.932 13 C 0.380 3.620 14 O -0.437 6.437 15 N -0.451 5.451 16 N -0.653 5.653 17 C 0.044 3.956 18 C 0.444 3.556 19 O -0.581 6.581 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.408 0.592 37 H 0.196 0.804 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.401 0.599 42 H 0.347 0.653 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.391 0.609 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.321 7.665 -20.055 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.107 0.893 5 C -0.045 4.045 6 N -0.364 5.364 7 C 0.393 3.607 8 O -0.421 6.421 9 C -0.176 4.176 10 C -0.093 4.093 11 N -0.159 5.159 12 C -0.074 4.074 13 C 0.079 3.921 14 O -0.237 6.237 15 N -0.181 5.181 16 N -0.285 5.285 17 C -0.089 4.089 18 C 0.229 3.771 19 O -0.465 6.465 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.244 0.756 37 H 0.213 0.787 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.258 0.742 42 H 0.167 0.833 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.224 0.776 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.060 7.250 -19.284 22.506 hybrid contribution 1.731 0.943 0.412 2.014 sum 10.791 8.193 -18.872 23.232 Atomic orbital electron populations 1.21620 0.94676 1.00509 1.03086 1.21504 0.97296 0.94343 1.01968 1.21985 0.90474 0.97219 0.93783 0.89311 1.22239 0.96609 0.82969 1.02732 1.45739 1.07254 1.10119 1.73335 1.16756 0.82307 0.85599 0.76067 1.90805 1.56127 1.44480 1.50691 1.20382 0.90589 0.93030 1.13584 1.22640 0.99888 0.82645 1.04161 1.45844 1.08298 1.07750 1.53991 1.22159 0.85898 0.95392 1.03991 1.20268 0.79519 0.86780 1.05533 1.84944 1.86047 1.17742 1.34939 1.70886 1.31155 0.96993 1.19024 1.60211 1.60575 1.07666 1.00030 1.21768 0.96449 0.99943 0.90706 1.19811 0.86058 0.86768 0.84428 1.90519 1.35768 1.33492 1.86757 1.41853 1.39101 1.34651 1.04639 1.19693 1.22535 1.17487 0.82932 0.87982 1.25243 0.96596 0.96758 0.99402 1.69622 1.30074 1.28296 1.26443 0.85878 0.78137 0.79617 0.80771 1.20427 1.21015 1.19456 0.93225 0.93583 0.91021 0.91830 0.91415 0.90707 0.91024 0.75595 0.78723 0.90075 0.88777 0.88910 0.74194 0.83294 0.93534 0.89335 0.77553 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.73 37.16 0.36 -1.33 16 2 C -0.11 -1.29 5.31 -26.73 -0.14 -1.43 16 3 C 0.08 0.93 2.71 -67.72 -0.18 0.75 16 4 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 5 C 0.08 1.01 4.47 -4.04 -0.02 0.99 16 6 N -0.71 -9.75 5.31 -61.44 -0.33 -10.08 16 7 C 0.61 9.14 7.81 -12.60 -0.10 9.05 16 8 O -0.54 -9.28 16.88 5.24 0.09 -9.19 16 9 C -0.05 -0.64 6.97 -83.06 -0.58 -1.22 16 10 C 0.04 0.47 11.29 -16.26 -0.18 0.28 16 11 N -0.46 -4.11 3.16 -125.76 -0.40 -4.51 16 12 C 0.07 0.27 11.11 59.85 0.66 0.94 16 13 C 0.38 4.29 9.03 -89.17 -0.81 3.49 16 14 O -0.44 -3.86 13.55 -18.09 -0.25 -4.10 16 15 N -0.45 -6.31 11.03 -11.21 -0.12 -6.43 16 16 N -0.65 -10.44 5.41 -107.99 -0.58 -11.03 16 17 C 0.04 0.80 5.30 -4.97 -0.03 0.78 16 18 C 0.44 10.88 7.83 -10.99 -0.09 10.80 16 19 O -0.58 -16.22 15.85 5.55 0.09 -16.14 16 20 N -0.57 -14.95 5.29 -10.97 -0.06 -15.01 16 21 C -0.30 -8.58 9.68 -14.94 -0.14 -8.72 16 22 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.39 13.05 55.50 0.72 -24.67 16 25 Si 0.93 21.75 29.55 -169.99 -5.02 16.72 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.83 6.28 -51.93 -0.33 0.51 16 34 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.41 5.52 6.94 -40.82 -0.28 5.24 16 37 H 0.20 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.09 0.34 8.13 -51.93 -0.42 -0.08 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.40 1.28 9.06 45.56 0.41 1.69 16 42 H 0.35 5.82 7.29 -39.29 -0.29 5.53 16 43 H 0.05 0.84 6.49 -51.93 -0.34 0.50 16 44 H 0.09 1.51 6.22 -51.93 -0.32 1.19 16 45 H 0.39 10.00 7.90 -40.82 -0.32 9.68 16 46 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -37.63 390.56 -6.85 -44.48 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -5.54 Total: 19.21 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: -1.34 Total: 14.86 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -0.77 Total: -71.72 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.07 Total: -29.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.63 -6.85 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753489121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.588 kcal (2) G-P(sol) polarization free energy of solvation -37.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds