Wall clock time and date at job start Tue Mar 31 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21637 * 119.99787 * 359.97438 * 7 6 5 9 9 C 1.47247 * 120.00265 * 179.97438 * 7 6 5 10 10 C 1.36251 * 126.16542 * 179.97438 * 9 7 6 11 11 N 1.36342 * 106.88426 * 180.02562 * 10 9 7 12 12 C 1.46508 * 126.19757 * 180.02562 * 11 10 9 13 13 C 1.36163 * 107.60551 * 0.02562 * 11 10 9 14 14 O 1.35465 * 125.55320 * 179.97438 * 13 11 10 15 15 N 1.30706 * 108.89752 * 359.72635 * 13 11 10 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47045 * 89.99551 * 25 23 21 27 27 H 1.48502 * 109.47232 * 209.99530 * 25 23 21 28 28 H 1.48507 * 109.46899 * 329.99656 * 25 23 21 29 29 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 30 30 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 31 31 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.07996 * 126.55794 * 359.97438 * 10 9 7 38 38 H 1.09000 * 109.47164 * 89.99602 * 12 11 10 39 39 H 1.08993 * 109.46985 * 209.99970 * 12 11 10 40 40 H 1.09005 * 109.46766 * 330.00414 * 12 11 10 41 41 H 0.96696 * 113.99270 * 89.99944 * 14 13 11 42 42 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 43 43 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 44 44 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 45 45 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 46 46 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1687 2.1445 -0.2115 9 6 5.8860 4.4426 0.0671 10 6 7.1906 4.8326 0.0193 11 7 7.2047 6.1875 0.1712 12 6 8.3929 7.0444 0.1837 13 6 5.9143 6.5999 0.3090 14 8 5.5113 7.8815 0.4827 15 7 5.1275 5.5584 0.2413 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2586 1.7275 4.8691 21 6 1.8024 2.3168 6.0198 22 1 1.0704 3.1091 5.9672 23 6 2.2819 1.8948 7.2538 24 7 3.1723 0.9304 7.3178 25 14 1.6598 2.6973 8.8218 26 1 0.4660 1.9636 9.3133 27 1 2.7257 2.6571 9.8550 28 1 1.2933 4.1092 8.5434 29 1 -0.3633 0.5933 -0.8391 30 1 -0.3633 -1.0234 -0.0944 31 1 -0.3633 0.4300 0.9333 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 8.0493 4.1911 -0.1127 38 1 8.6155 7.3718 -0.8318 39 1 8.2068 7.9144 0.8134 40 1 9.2405 6.4844 0.5789 41 1 5.3325 8.3526 -0.3426 42 1 1.8236 3.0952 1.2081 43 1 3.3737 1.6315 2.3296 44 1 2.0702 0.4237 2.4306 45 1 2.9164 1.0162 4.9164 46 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753489121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:37 Heat of formation + Delta-G solvation = -77.185371 kcal Electronic energy + Delta-G solvation = -29570.800529 eV Core-core repulsion = 25302.836486 eV Total energy + Delta-G solvation = -4267.964043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.25074 -40.86046 -40.07354 -38.61434 -38.23126 -35.96716 -35.36824 -34.79793 -33.34933 -32.98524 -30.51246 -29.70331 -28.39965 -27.69341 -26.07712 -24.93939 -23.40026 -22.44218 -21.77024 -21.19921 -20.54186 -19.86767 -19.58507 -18.71514 -18.28322 -17.48909 -17.06954 -17.00018 -16.63308 -16.50654 -16.17717 -15.89132 -15.55866 -15.51135 -15.30642 -15.10033 -14.89652 -14.59109 -14.37777 -13.98534 -13.75658 -13.60010 -13.53128 -13.46295 -13.09488 -12.96137 -12.87734 -12.63503 -12.42065 -12.26561 -12.13061 -11.78463 -11.56278 -11.51244 -11.47543 -11.13262 -10.87307 -10.35025 -10.20522 -10.01499 -9.60156 -9.35901 -8.46581 -5.95570 0.42209 1.02834 1.35892 1.37160 1.39831 1.53356 2.04785 2.08763 2.28877 2.38050 2.75363 2.95487 3.20094 3.51647 3.57907 3.71875 3.77549 4.02244 4.08912 4.21566 4.30849 4.33181 4.38346 4.40859 4.47632 4.57941 4.67603 4.69207 4.71220 4.84132 4.96117 5.01841 5.19576 5.21463 5.34039 5.40062 5.40942 5.60109 5.60948 5.88081 6.08660 6.29614 6.35931 6.59168 6.59567 6.65270 7.12281 7.12435 7.55649 8.11212 8.71087 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007503 B = 0.003418 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3730.772914 B = 8189.389780 C =10684.228704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.085 3.915 4 H 0.108 0.892 5 C 0.084 3.916 6 N -0.711 5.711 7 C 0.602 3.398 8 O -0.572 6.572 9 C -0.087 4.087 10 C 0.060 3.940 11 N -0.454 5.454 12 C 0.060 3.940 13 C 0.377 3.623 14 O -0.443 6.443 15 N -0.490 5.490 16 N -0.660 5.660 17 C 0.065 3.935 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.269 1.269 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.408 0.592 37 H 0.219 0.781 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.425 0.575 42 H 0.341 0.659 43 H 0.052 0.948 44 H 0.105 0.895 45 H 0.394 0.606 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.485 8.015 -20.875 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C -0.025 4.025 4 H 0.126 0.874 5 C -0.041 4.041 6 N -0.362 5.362 7 C 0.389 3.611 8 O -0.452 6.452 9 C -0.215 4.215 10 C -0.079 4.079 11 N -0.148 5.148 12 C -0.080 4.080 13 C 0.074 3.926 14 O -0.246 6.246 15 N -0.221 5.221 16 N -0.291 5.291 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.194 1.194 27 H -0.195 1.195 28 H -0.198 1.198 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.236 0.764 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.285 0.715 42 H 0.161 0.839 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.227 0.773 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.234 7.613 -20.138 23.837 hybrid contribution 1.393 0.922 0.597 1.773 sum 11.627 8.534 -19.541 24.287 Atomic orbital electron populations 1.21575 0.95013 1.01255 1.01719 1.21537 0.96876 0.93626 1.02917 1.22079 0.90332 0.97808 0.92323 0.87361 1.22234 0.96480 0.82412 1.02951 1.45775 1.07067 1.10458 1.72865 1.17041 0.82381 0.86144 0.75497 1.90767 1.56677 1.45415 1.52369 1.20357 0.91995 0.92493 1.16633 1.23016 0.99458 0.83513 1.01952 1.46053 1.08866 1.07526 1.52325 1.22549 0.84429 0.95064 1.05973 1.20356 0.80319 0.87072 1.04820 1.84897 1.86030 1.16744 1.36961 1.70754 1.32809 0.97860 1.20683 1.60217 1.60679 1.07493 1.00759 1.21527 0.96441 1.00170 0.88626 1.20848 0.84864 0.85922 0.85646 1.90483 1.37326 1.35115 1.87552 1.41935 1.39464 1.34904 1.04928 1.19674 1.23639 1.18334 0.84666 0.90328 1.26063 0.96341 0.96984 1.01962 1.69689 1.30271 1.28699 1.27622 0.84925 0.78142 0.78379 0.76865 1.19428 1.19484 1.19787 0.92145 0.92288 0.94309 0.88947 0.92381 0.92163 0.89518 0.75623 0.76397 0.87502 0.88196 0.87218 0.71451 0.83946 0.93011 0.87664 0.77270 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.73 71.98 0.70 -2.42 16 2 C -0.11 -2.34 5.31 30.59 0.16 -2.18 16 3 C 0.08 1.96 2.71 44.91 0.12 2.09 16 4 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 5 C 0.08 2.07 4.47 86.38 0.39 2.45 16 6 N -0.71 -19.57 5.31 -466.54 -2.48 -22.04 16 7 C 0.60 18.37 7.81 86.61 0.68 19.05 16 8 O -0.57 -19.64 16.88 -4.15 -0.07 -19.71 16 9 C -0.09 -2.39 6.97 40.40 0.28 -2.11 16 10 C 0.06 1.21 11.29 83.53 0.94 2.15 16 11 N -0.45 -7.30 3.16 -662.72 -2.09 -9.39 16 12 C 0.06 0.32 11.11 127.77 1.42 1.74 16 13 C 0.38 8.23 9.03 179.84 1.62 9.85 16 14 O -0.44 -7.35 13.55 -87.63 -1.19 -8.53 16 15 N -0.49 -13.88 11.03 -303.15 -3.34 -17.22 16 16 N -0.66 -21.15 5.41 -495.58 -2.68 -23.83 16 17 C 0.06 2.40 5.30 85.55 0.45 2.86 16 18 C 0.44 22.21 7.83 87.66 0.69 22.89 16 19 O -0.62 -35.75 15.85 -3.05 -0.05 -35.80 16 20 N -0.58 -31.32 5.29 -307.00 -1.62 -32.94 16 21 C -0.33 -19.83 9.68 84.04 0.81 -19.01 16 22 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -51.81 13.05 21.66 0.28 -51.52 16 25 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 1.13 7.88 -2.39 -0.02 1.11 16 32 H 0.09 1.46 8.14 -2.38 -0.02 1.45 16 33 H 0.06 1.35 6.28 -2.39 -0.01 1.33 16 34 H 0.06 1.67 6.71 -2.39 -0.02 1.66 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.41 11.28 6.94 -92.70 -0.64 10.64 16 37 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.10 0.47 8.13 -2.39 -0.02 0.45 16 40 H 0.11 0.26 8.14 -2.38 -0.02 0.25 16 41 H 0.42 2.11 9.06 -74.06 -0.67 1.44 16 42 H 0.34 11.66 7.29 -89.70 -0.65 11.00 16 43 H 0.05 1.89 6.49 -2.39 -0.02 1.88 16 44 H 0.11 3.58 6.22 -2.39 -0.01 3.57 16 45 H 0.39 20.65 7.90 -92.71 -0.73 19.92 16 46 H 0.28 14.55 8.31 -92.70 -0.77 13.78 16 Total: -1.00 -83.59 390.56 -4.11 -87.70 By element: Atomic # 1 Polarization: 51.30 SS G_CDS: -1.63 Total: 49.67 kcal Atomic # 6 Polarization: 28.32 SS G_CDS: 8.74 Total: 37.05 kcal Atomic # 7 Polarization: -145.01 SS G_CDS: -11.93 Total: -156.95 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -1.31 Total: -64.05 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -83.59 -4.11 -87.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753489121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.512 kcal (2) G-P(sol) polarization free energy of solvation -83.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds